Experiment: vio MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00443 and OHPLBJKB_00444 are separated by 85 nucleotides OHPLBJKB_00444 and OHPLBJKB_00445 are separated by 25 nucleotides OHPLBJKB_00445 and OHPLBJKB_00446 are separated by 433 nucleotides
OHPLBJKB_00443: OHPLBJKB_00443 - DNA adenine methyltransferase YhdJ, at 454,021 to 454,905
_00443
OHPLBJKB_00444: OHPLBJKB_00444 - DNA-binding protein Fis, at 454,991 to 455,287
_00444
OHPLBJKB_00445: OHPLBJKB_00445 - putative tRNA-dihydrouridine synthase, at 455,313 to 456,173
_00445
OHPLBJKB_00446: OHPLBJKB_00446 - Ribosomal protein L11 methyltransferase, at 456,607 to 457,488
_00446
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 454.331 kb on + strand, within OHPLBJKB_00443 at 454.343 kb on - strand, within OHPLBJKB_00443 at 454.343 kb on - strand, within OHPLBJKB_00443 at 454.397 kb on + strand, within OHPLBJKB_00443 at 454.397 kb on + strand, within OHPLBJKB_00443 at 454.397 kb on + strand, within OHPLBJKB_00443 at 454.397 kb on + strand, within OHPLBJKB_00443 at 454.397 kb on + strand, within OHPLBJKB_00443 at 454.397 kb on + strand, within OHPLBJKB_00443 at 454.398 kb on - strand, within OHPLBJKB_00443 at 454.398 kb on - strand, within OHPLBJKB_00443 at 454.398 kb on - strand, within OHPLBJKB_00443 at 454.398 kb on - strand, within OHPLBJKB_00443 at 454.398 kb on - strand, within OHPLBJKB_00443 at 454.467 kb on + strand, within OHPLBJKB_00443 at 454.468 kb on - strand, within OHPLBJKB_00443 at 454.468 kb on - strand, within OHPLBJKB_00443 at 454.488 kb on - strand, within OHPLBJKB_00443 at 454.526 kb on + strand, within OHPLBJKB_00443 at 454.526 kb on + strand, within OHPLBJKB_00443 at 454.526 kb on + strand, within OHPLBJKB_00443 at 454.527 kb on - strand, within OHPLBJKB_00443 at 454.527 kb on - strand, within OHPLBJKB_00443 at 454.527 kb on - strand, within OHPLBJKB_00443 at 454.538 kb on + strand, within OHPLBJKB_00443 at 454.571 kb on + strand, within OHPLBJKB_00443 at 454.571 kb on + strand, within OHPLBJKB_00443 at 454.572 kb on - strand, within OHPLBJKB_00443 at 454.600 kb on - strand, within OHPLBJKB_00443 at 454.653 kb on + strand, within OHPLBJKB_00443 at 454.654 kb on - strand, within OHPLBJKB_00443 at 454.654 kb on - strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.658 kb on + strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.659 kb on - strand, within OHPLBJKB_00443 at 454.778 kb on + strand, within OHPLBJKB_00443 at 454.778 kb on + strand, within OHPLBJKB_00443 at 454.778 kb on + strand, within OHPLBJKB_00443 at 454.779 kb on - strand, within OHPLBJKB_00443 at 454.779 kb on - strand, within OHPLBJKB_00443 at 454.815 kb on + strand, within OHPLBJKB_00443 at 454.820 kb on - strand at 454.820 kb on - strand at 454.863 kb on + strand at 454.864 kb on - strand at 454.927 kb on + strand at 454.927 kb on + strand at 454.978 kb on + strand at 455.083 kb on - strand, within OHPLBJKB_00444 at 455.115 kb on - strand, within OHPLBJKB_00444 at 455.137 kb on - strand, within OHPLBJKB_00444 at 455.176 kb on - strand, within OHPLBJKB_00444 at 455.259 kb on - strand at 455.271 kb on - strand at 455.287 kb on + strand at 455.288 kb on - strand at 455.288 kb on - strand at 455.423 kb on - strand, within OHPLBJKB_00445 at 455.438 kb on + strand, within OHPLBJKB_00445 at 455.439 kb on - strand, within OHPLBJKB_00445 at 455.513 kb on + strand, within OHPLBJKB_00445 at 455.561 kb on - strand, within OHPLBJKB_00445 at 455.611 kb on - strand, within OHPLBJKB_00445 at 455.634 kb on - strand, within OHPLBJKB_00445 at 455.634 kb on - strand, within OHPLBJKB_00445 at 455.634 kb on - strand, within OHPLBJKB_00445 at 455.670 kb on - strand, within OHPLBJKB_00445 at 455.712 kb on - strand, within OHPLBJKB_00445 at 455.724 kb on - strand, within OHPLBJKB_00445 at 455.732 kb on - strand, within OHPLBJKB_00445 at 455.832 kb on - strand, within OHPLBJKB_00445 at 455.832 kb on - strand, within OHPLBJKB_00445 at 455.994 kb on - strand, within OHPLBJKB_00445 at 455.999 kb on + strand, within OHPLBJKB_00445 at 456.026 kb on + strand, within OHPLBJKB_00445 at 456.026 kb on + strand, within OHPLBJKB_00445 at 456.027 kb on - strand, within OHPLBJKB_00445 at 456.027 kb on - strand, within OHPLBJKB_00445 at 456.147 kb on - strand at 456.147 kb on - strand at 456.190 kb on + strand at 456.296 kb on + strand at 456.318 kb on - strand at 456.416 kb on + strand at 456.434 kb on + strand at 456.592 kb on - strand at 456.615 kb on + strand at 456.615 kb on + strand at 456.625 kb on - strand at 456.625 kb on - strand at 456.851 kb on + strand, within OHPLBJKB_00446 at 456.851 kb on + strand, within OHPLBJKB_00446 at 456.852 kb on - strand, within OHPLBJKB_00446 at 456.852 kb on - strand, within OHPLBJKB_00446 at 456.852 kb on - strand, within OHPLBJKB_00446 at 456.852 kb on - strand, within OHPLBJKB_00446 at 456.879 kb on + strand, within OHPLBJKB_00446 at 456.879 kb on + strand, within OHPLBJKB_00446 at 456.879 kb on + strand, within OHPLBJKB_00446 at 456.879 kb on + strand, within OHPLBJKB_00446 at 456.930 kb on + strand, within OHPLBJKB_00446 at 457.018 kb on + strand, within OHPLBJKB_00446 at 457.096 kb on + strand, within OHPLBJKB_00446 at 457.096 kb on + strand, within OHPLBJKB_00446 at 457.097 kb on - strand, within OHPLBJKB_00446 at 457.097 kb on - strand, within OHPLBJKB_00446
Per-strain Table
Position Strand Gene LocusTag Fraction vio MOI10 remove 454,331 + OHPLBJKB_00443 0.35 -1.0 454,343 - OHPLBJKB_00443 0.36 -0.4 454,343 - OHPLBJKB_00443 0.36 -0.3 454,397 + OHPLBJKB_00443 0.42 -0.5 454,397 + OHPLBJKB_00443 0.42 +0.2 454,397 + OHPLBJKB_00443 0.42 +0.3 454,397 + OHPLBJKB_00443 0.42 -1.3 454,397 + OHPLBJKB_00443 0.42 +0.7 454,397 + OHPLBJKB_00443 0.42 -0.6 454,398 - OHPLBJKB_00443 0.43 +0.6 454,398 - OHPLBJKB_00443 0.43 -0.7 454,398 - OHPLBJKB_00443 0.43 +6.3 454,398 - OHPLBJKB_00443 0.43 -1.0 454,398 - OHPLBJKB_00443 0.43 +0.2 454,467 + OHPLBJKB_00443 0.50 -0.2 454,468 - OHPLBJKB_00443 0.51 -0.1 454,468 - OHPLBJKB_00443 0.51 +0.5 454,488 - OHPLBJKB_00443 0.53 -0.5 454,526 + OHPLBJKB_00443 0.57 -0.9 454,526 + OHPLBJKB_00443 0.57 +0.5 454,526 + OHPLBJKB_00443 0.57 +0.8 454,527 - OHPLBJKB_00443 0.57 -1.0 454,527 - OHPLBJKB_00443 0.57 -0.3 454,527 - OHPLBJKB_00443 0.57 +0.0 454,538 + OHPLBJKB_00443 0.58 +1.6 454,571 + OHPLBJKB_00443 0.62 +0.0 454,571 + OHPLBJKB_00443 0.62 +0.3 454,572 - OHPLBJKB_00443 0.62 +0.6 454,600 - OHPLBJKB_00443 0.65 -1.5 454,653 + OHPLBJKB_00443 0.71 +1.5 454,654 - OHPLBJKB_00443 0.72 +0.5 454,654 - OHPLBJKB_00443 0.72 -1.0 454,658 + OHPLBJKB_00443 0.72 +0.4 454,658 + OHPLBJKB_00443 0.72 +0.3 454,658 + OHPLBJKB_00443 0.72 -0.2 454,658 + OHPLBJKB_00443 0.72 +0.2 454,658 + OHPLBJKB_00443 0.72 +0.3 454,658 + OHPLBJKB_00443 0.72 -0.9 454,658 + OHPLBJKB_00443 0.72 +0.8 454,659 - OHPLBJKB_00443 0.72 +0.1 454,659 - OHPLBJKB_00443 0.72 -1.4 454,659 - OHPLBJKB_00443 0.72 -0.0 454,659 - OHPLBJKB_00443 0.72 -0.6 454,659 - OHPLBJKB_00443 0.72 +0.4 454,659 - OHPLBJKB_00443 0.72 -0.5 454,659 - OHPLBJKB_00443 0.72 +1.3 454,659 - OHPLBJKB_00443 0.72 +0.4 454,659 - OHPLBJKB_00443 0.72 +0.0 454,778 + OHPLBJKB_00443 0.86 +0.2 454,778 + OHPLBJKB_00443 0.86 -0.5 454,778 + OHPLBJKB_00443 0.86 +0.2 454,779 - OHPLBJKB_00443 0.86 +0.1 454,779 - OHPLBJKB_00443 0.86 -0.3 454,815 + OHPLBJKB_00443 0.90 +0.4 454,820 - +0.6 454,820 - -1.7 454,863 + -0.3 454,864 - +0.0 454,927 + -0.0 454,927 + -0.2 454,978 + -0.9 455,083 - OHPLBJKB_00444 0.31 +0.3 455,115 - OHPLBJKB_00444 0.42 -1.6 455,137 - OHPLBJKB_00444 0.49 -1.0 455,176 - OHPLBJKB_00444 0.62 -0.5 455,259 - -1.3 455,271 - +0.0 455,287 + -1.0 455,288 - -0.5 455,288 - -0.5 455,423 - OHPLBJKB_00445 0.13 -2.8 455,438 + OHPLBJKB_00445 0.15 -0.5 455,439 - OHPLBJKB_00445 0.15 -0.9 455,513 + OHPLBJKB_00445 0.23 +0.3 455,561 - OHPLBJKB_00445 0.29 -0.8 455,611 - OHPLBJKB_00445 0.35 -0.3 455,634 - OHPLBJKB_00445 0.37 +0.2 455,634 - OHPLBJKB_00445 0.37 -0.5 455,634 - OHPLBJKB_00445 0.37 -0.5 455,670 - OHPLBJKB_00445 0.41 -0.8 455,712 - OHPLBJKB_00445 0.46 -0.2 455,724 - OHPLBJKB_00445 0.48 -0.3 455,732 - OHPLBJKB_00445 0.49 -1.0 455,832 - OHPLBJKB_00445 0.60 -0.1 455,832 - OHPLBJKB_00445 0.60 -1.2 455,994 - OHPLBJKB_00445 0.79 +0.9 455,999 + OHPLBJKB_00445 0.80 -1.3 456,026 + OHPLBJKB_00445 0.83 -1.1 456,026 + OHPLBJKB_00445 0.83 -0.5 456,027 - OHPLBJKB_00445 0.83 -2.5 456,027 - OHPLBJKB_00445 0.83 -1.7 456,147 - -0.1 456,147 - -0.9 456,190 + -1.8 456,296 + +0.3 456,318 - -1.2 456,416 + -0.3 456,434 + -0.3 456,592 - +0.0 456,615 + +1.3 456,615 + -0.1 456,625 - -0.5 456,625 - -1.2 456,851 + OHPLBJKB_00446 0.28 -1.2 456,851 + OHPLBJKB_00446 0.28 -0.8 456,852 - OHPLBJKB_00446 0.28 -0.0 456,852 - OHPLBJKB_00446 0.28 -1.8 456,852 - OHPLBJKB_00446 0.28 +0.0 456,852 - OHPLBJKB_00446 0.28 +0.9 456,879 + OHPLBJKB_00446 0.31 +0.2 456,879 + OHPLBJKB_00446 0.31 -1.2 456,879 + OHPLBJKB_00446 0.31 -1.8 456,879 + OHPLBJKB_00446 0.31 +1.3 456,930 + OHPLBJKB_00446 0.37 -1.2 457,018 + OHPLBJKB_00446 0.47 -2.2 457,096 + OHPLBJKB_00446 0.55 -1.1 457,096 + OHPLBJKB_00446 0.55 -1.0 457,097 - OHPLBJKB_00446 0.56 -0.8 457,097 - OHPLBJKB_00446 0.56 -0.1
Or see this region's nucleotide sequence