Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS27355

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS20280 and COO64_RS20285 overlap by 4 nucleotidesCOO64_RS20285 and COO64_RS20290 overlap by 4 nucleotidesCOO64_RS20290 and COO64_RS20295 overlap by 17 nucleotidesCOO64_RS20295 and COO64_RS27355 overlap by 4 nucleotidesCOO64_RS27355 and COO64_RS20310 are separated by 84 nucleotidesCOO64_RS20310 and COO64_RS20315 are separated by 83 nucleotides COO64_RS20280: COO64_RS20280 - HNH endonuclease, at 158,095 to 158,610 _RS20280 COO64_RS20285: COO64_RS20285 - AlpA family transcriptional regulator, at 158,607 to 158,858 _RS20285 COO64_RS20290: COO64_RS20290 - hypothetical protein, at 158,855 to 159,229 _RS20290 COO64_RS20295: COO64_RS20295 - hypothetical protein, at 159,213 to 159,404 _RS20295 COO64_RS27355: COO64_RS27355 - Arc family DNA-binding protein, at 159,401 to 159,814 _RS27355 COO64_RS20310: COO64_RS20310 - LuxR C-terminal-related transcriptional regulator, at 159,899 to 160,279 _RS20310 COO64_RS20315: COO64_RS20315 - LexA family transcriptional regulator, at 160,363 to 161,127 _RS20315 Position (kb) 159 160Strain fitness (log2 ratio) -2 -1 0 1 2at 158.408 kb on + strand, within COO64_RS20280at 158.408 kb on + strand, within COO64_RS20280at 158.408 kb on + strand, within COO64_RS20280at 158.408 kb on + strand, within COO64_RS20280at 158.409 kb on - strand, within COO64_RS20280at 158.409 kb on - strand, within COO64_RS20280at 158.409 kb on - strand, within COO64_RS20280at 158.425 kb on + strand, within COO64_RS20280at 158.425 kb on + strand, within COO64_RS20280at 158.425 kb on + strand, within COO64_RS20280at 158.425 kb on + strand, within COO64_RS20280at 158.426 kb on - strand, within COO64_RS20280at 158.426 kb on - strand, within COO64_RS20280at 158.426 kb on - strand, within COO64_RS20280at 158.426 kb on - strand, within COO64_RS20280at 158.462 kb on + strand, within COO64_RS20280at 158.463 kb on - strand, within COO64_RS20280at 158.471 kb on + strand, within COO64_RS20280at 158.471 kb on + strand, within COO64_RS20280at 158.472 kb on - strand, within COO64_RS20280at 158.472 kb on - strand, within COO64_RS20280at 158.472 kb on - strand, within COO64_RS20280at 158.512 kb on + strand, within COO64_RS20280at 158.513 kb on - strand, within COO64_RS20280at 158.542 kb on + strand, within COO64_RS20280at 158.542 kb on + strand, within COO64_RS20280at 158.543 kb on - strand, within COO64_RS20280at 158.543 kb on - strand, within COO64_RS20280at 158.543 kb on - strand, within COO64_RS20280at 158.543 kb on - strand, within COO64_RS20280at 158.545 kb on + strand, within COO64_RS20280at 158.545 kb on + strand, within COO64_RS20280at 158.545 kb on + strand, within COO64_RS20280at 158.546 kb on - strand, within COO64_RS20280at 158.567 kb on + strandat 158.567 kb on + strandat 158.567 kb on + strandat 158.567 kb on + strandat 158.567 kb on + strandat 158.568 kb on - strandat 158.568 kb on - strandat 158.568 kb on - strandat 158.568 kb on - strandat 158.568 kb on - strandat 158.703 kb on + strand, within COO64_RS20285at 158.703 kb on + strand, within COO64_RS20285at 158.704 kb on - strand, within COO64_RS20285at 158.704 kb on - strand, within COO64_RS20285at 158.704 kb on - strand, within COO64_RS20285at 158.704 kb on - strand, within COO64_RS20285at 158.704 kb on - strand, within COO64_RS20285at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.900 kb on + strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.901 kb on - strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.958 kb on + strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 158.959 kb on - strand, within COO64_RS20290at 159.002 kb on + strand, within COO64_RS20290at 159.002 kb on + strand, within COO64_RS20290at 159.003 kb on - strand, within COO64_RS20290at 159.003 kb on - strand, within COO64_RS20290at 159.003 kb on - strand, within COO64_RS20290at 159.003 kb on - strand, within COO64_RS20290at 159.039 kb on - strand, within COO64_RS20290at 159.039 kb on - strand, within COO64_RS20290at 159.039 kb on - strand, within COO64_RS20290at 159.121 kb on + strand, within COO64_RS20290at 159.181 kb on + strand, within COO64_RS20290at 159.434 kb on + strandat 159.434 kb on + strandat 159.434 kb on + strandat 159.434 kb on + strandat 159.434 kb on + strandat 159.434 kb on + strandat 159.434 kb on + strandat 159.435 kb on - strandat 159.435 kb on - strandat 159.435 kb on - strandat 159.435 kb on - strandat 159.635 kb on + strand, within COO64_RS27355at 159.636 kb on - strand, within COO64_RS27355at 159.678 kb on + strand, within COO64_RS27355at 159.678 kb on + strand, within COO64_RS27355at 159.758 kb on - strand, within COO64_RS27355at 159.804 kb on + strandat 159.805 kb on - strandat 159.805 kb on - strandat 159.889 kb on + strandat 159.938 kb on - strand, within COO64_RS20310at 160.051 kb on + strand, within COO64_RS20310at 160.051 kb on + strand, within COO64_RS20310at 160.052 kb on - strand, within COO64_RS20310at 160.052 kb on - strand, within COO64_RS20310at 160.095 kb on + strand, within COO64_RS20310at 160.096 kb on - strand, within COO64_RS20310at 160.096 kb on - strand, within COO64_RS20310at 160.096 kb on - strand, within COO64_RS20310at 160.108 kb on + strand, within COO64_RS20310at 160.108 kb on + strand, within COO64_RS20310at 160.108 kb on + strand, within COO64_RS20310at 160.108 kb on + strand, within COO64_RS20310at 160.109 kb on - strand, within COO64_RS20310at 160.126 kb on + strand, within COO64_RS20310at 160.127 kb on - strand, within COO64_RS20310at 160.127 kb on - strand, within COO64_RS20310at 160.127 kb on - strand, within COO64_RS20310at 160.205 kb on + strand, within COO64_RS20310at 160.280 kb on - strandat 160.301 kb on + strandat 160.301 kb on + strandat 160.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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158,408 + COO64_RS20280 0.61 +0.0
158,408 + COO64_RS20280 0.61 +0.1
158,408 + COO64_RS20280 0.61 +0.5
158,408 + COO64_RS20280 0.61 +0.4
158,409 - COO64_RS20280 0.61 +1.0
158,409 - COO64_RS20280 0.61 -0.0
158,409 - COO64_RS20280 0.61 +1.0
158,425 + COO64_RS20280 0.64 -1.3
158,425 + COO64_RS20280 0.64 +0.2
158,425 + COO64_RS20280 0.64 +0.9
158,425 + COO64_RS20280 0.64 -1.4
158,426 - COO64_RS20280 0.64 +0.3
158,426 - COO64_RS20280 0.64 -1.5
158,426 - COO64_RS20280 0.64 -0.2
158,426 - COO64_RS20280 0.64 +0.4
158,462 + COO64_RS20280 0.71 +0.3
158,463 - COO64_RS20280 0.71 +1.4
158,471 + COO64_RS20280 0.73 -0.4
158,471 + COO64_RS20280 0.73 +0.5
158,472 - COO64_RS20280 0.73 -1.5
158,472 - COO64_RS20280 0.73 -0.3
158,472 - COO64_RS20280 0.73 -0.0
158,512 + COO64_RS20280 0.81 +0.7
158,513 - COO64_RS20280 0.81 +0.8
158,542 + COO64_RS20280 0.87 -0.1
158,542 + COO64_RS20280 0.87 -0.3
158,543 - COO64_RS20280 0.87 +0.2
158,543 - COO64_RS20280 0.87 -0.2
158,543 - COO64_RS20280 0.87 +0.3
158,543 - COO64_RS20280 0.87 -0.5
158,545 + COO64_RS20280 0.87 -0.7
158,545 + COO64_RS20280 0.87 -0.9
158,545 + COO64_RS20280 0.87 -0.2
158,546 - COO64_RS20280 0.87 -1.7
158,567 + +1.6
158,567 + -0.2
158,567 + +1.6
158,567 + -0.0
158,567 + -0.3
158,568 - +0.8
158,568 - +0.2
158,568 - -0.7
158,568 - -0.2
158,568 - -0.3
158,703 + COO64_RS20285 0.38 -1.5
158,703 + COO64_RS20285 0.38 -0.4
158,704 - COO64_RS20285 0.38 +0.2
158,704 - COO64_RS20285 0.38 +0.2
158,704 - COO64_RS20285 0.38 -0.0
158,704 - COO64_RS20285 0.38 +0.8
158,704 - COO64_RS20285 0.38 +1.0
158,900 + COO64_RS20290 0.12 +0.6
158,900 + COO64_RS20290 0.12 -0.1
158,900 + COO64_RS20290 0.12 +0.9
158,900 + COO64_RS20290 0.12 -0.3
158,900 + COO64_RS20290 0.12 -0.2
158,900 + COO64_RS20290 0.12 +0.5
158,900 + COO64_RS20290 0.12 -0.2
158,900 + COO64_RS20290 0.12 +0.5
158,901 - COO64_RS20290 0.12 -1.0
158,901 - COO64_RS20290 0.12 -1.5
158,901 - COO64_RS20290 0.12 +0.1
158,901 - COO64_RS20290 0.12 +0.4
158,901 - COO64_RS20290 0.12 -0.1
158,901 - COO64_RS20290 0.12 -0.8
158,901 - COO64_RS20290 0.12 -0.7
158,901 - COO64_RS20290 0.12 -0.2
158,958 + COO64_RS20290 0.27 +0.0
158,958 + COO64_RS20290 0.27 -0.4
158,958 + COO64_RS20290 0.27 +0.7
158,958 + COO64_RS20290 0.27 -0.4
158,958 + COO64_RS20290 0.27 -0.7
158,958 + COO64_RS20290 0.27 +0.3
158,958 + COO64_RS20290 0.27 -1.0
158,958 + COO64_RS20290 0.27 +0.1
158,958 + COO64_RS20290 0.27 +0.5
158,958 + COO64_RS20290 0.27 -2.2
158,958 + COO64_RS20290 0.27 -0.6
158,958 + COO64_RS20290 0.27 -0.8
158,958 + COO64_RS20290 0.27 +0.2
158,959 - COO64_RS20290 0.28 -0.5
158,959 - COO64_RS20290 0.28 +0.2
158,959 - COO64_RS20290 0.28 +1.3
158,959 - COO64_RS20290 0.28 +0.1
158,959 - COO64_RS20290 0.28 +0.5
158,959 - COO64_RS20290 0.28 -0.0
158,959 - COO64_RS20290 0.28 -0.8
158,959 - COO64_RS20290 0.28 -0.2
158,959 - COO64_RS20290 0.28 +0.8
158,959 - COO64_RS20290 0.28 +0.2
159,002 + COO64_RS20290 0.39 -0.3
159,002 + COO64_RS20290 0.39 -0.2
159,003 - COO64_RS20290 0.39 +0.5
159,003 - COO64_RS20290 0.39 -0.4
159,003 - COO64_RS20290 0.39 +0.2
159,003 - COO64_RS20290 0.39 -0.5
159,039 - COO64_RS20290 0.49 -1.0
159,039 - COO64_RS20290 0.49 +0.3
159,039 - COO64_RS20290 0.49 -0.3
159,121 + COO64_RS20290 0.71 +0.8
159,181 + COO64_RS20290 0.87 -0.5
159,434 + +0.4
159,434 + -0.2
159,434 + +0.5
159,434 + +0.9
159,434 + -0.2
159,434 + -0.1
159,434 + +0.2
159,435 - -0.4
159,435 - +1.3
159,435 - +1.0
159,435 - +0.2
159,635 + COO64_RS27355 0.57 -1.8
159,636 - COO64_RS27355 0.57 -0.3
159,678 + COO64_RS27355 0.67 -0.3
159,678 + COO64_RS27355 0.67 +0.6
159,758 - COO64_RS27355 0.86 -1.4
159,804 + -0.6
159,805 - -0.2
159,805 - +0.3
159,889 + +0.3
159,938 - COO64_RS20310 0.10 +0.6
160,051 + COO64_RS20310 0.40 +1.0
160,051 + COO64_RS20310 0.40 -1.2
160,052 - COO64_RS20310 0.40 +0.3
160,052 - COO64_RS20310 0.40 +0.0
160,095 + COO64_RS20310 0.51 -1.0
160,096 - COO64_RS20310 0.52 +1.8
160,096 - COO64_RS20310 0.52 -0.6
160,096 - COO64_RS20310 0.52 +0.3
160,108 + COO64_RS20310 0.55 +0.4
160,108 + COO64_RS20310 0.55 -0.4
160,108 + COO64_RS20310 0.55 +0.4
160,108 + COO64_RS20310 0.55 +0.4
160,109 - COO64_RS20310 0.55 -0.2
160,126 + COO64_RS20310 0.60 -2.0
160,127 - COO64_RS20310 0.60 +2.0
160,127 - COO64_RS20310 0.60 -1.2
160,127 - COO64_RS20310 0.60 -1.9
160,205 + COO64_RS20310 0.80 -1.5
160,280 - +0.1
160,301 + +0.3
160,301 + +0.8
160,302 - +0.0

Or see this region's nucleotide sequence