Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS09730

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS09720 and COO64_RS09725 are separated by 82 nucleotidesCOO64_RS09725 and COO64_RS09730 overlap by 4 nucleotidesCOO64_RS09730 and COO64_RS09735 are separated by 76 nucleotides COO64_RS09720: COO64_RS09720 - CHAD domain-containing protein, at 76,701 to 77,471 _RS09720 COO64_RS09725: COO64_RS09725 - acyl-CoA thioesterase II, at 77,554 to 78,354 _RS09725 COO64_RS09730: COO64_RS09730 - Mpo1-like protein, at 78,351 to 78,713 _RS09730 COO64_RS09735: COO64_RS09735 - methyl-accepting chemotaxis protein, at 78,790 to 80,268 _RS09735 Position (kb) 78 79Strain fitness (log2 ratio) -2 -1 0 1at 77.501 kb on - strandat 77.668 kb on + strand, within COO64_RS09725at 77.668 kb on + strand, within COO64_RS09725at 77.668 kb on + strand, within COO64_RS09725at 77.669 kb on - strand, within COO64_RS09725at 77.724 kb on + strand, within COO64_RS09725at 77.724 kb on + strand, within COO64_RS09725at 77.725 kb on - strand, within COO64_RS09725at 77.950 kb on + strand, within COO64_RS09725at 77.951 kb on - strand, within COO64_RS09725at 77.951 kb on - strand, within COO64_RS09725at 77.951 kb on - strand, within COO64_RS09725at 77.951 kb on - strand, within COO64_RS09725at 77.951 kb on - strand, within COO64_RS09725at 77.951 kb on - strand, within COO64_RS09725at 78.145 kb on + strand, within COO64_RS09725at 78.146 kb on - strand, within COO64_RS09725at 78.146 kb on - strand, within COO64_RS09725at 78.171 kb on + strand, within COO64_RS09725at 78.238 kb on + strand, within COO64_RS09725at 78.511 kb on - strand, within COO64_RS09730at 78.511 kb on - strand, within COO64_RS09730at 78.707 kb on + strandat 78.707 kb on + strandat 78.782 kb on + strandat 78.791 kb on + strandat 78.794 kb on - strandat 78.794 kb on - strandat 78.794 kb on - strandat 78.794 kb on - strandat 78.975 kb on + strand, within COO64_RS09735at 78.975 kb on + strand, within COO64_RS09735at 78.975 kb on + strand, within COO64_RS09735at 78.976 kb on - strand, within COO64_RS09735at 78.976 kb on - strand, within COO64_RS09735at 78.976 kb on - strand, within COO64_RS09735at 78.976 kb on - strand, within COO64_RS09735at 78.976 kb on - strand, within COO64_RS09735at 78.976 kb on - strand, within COO64_RS09735at 79.177 kb on + strand, within COO64_RS09735at 79.177 kb on + strand, within COO64_RS09735at 79.178 kb on - strand, within COO64_RS09735at 79.178 kb on - strand, within COO64_RS09735at 79.178 kb on - strand, within COO64_RS09735at 79.178 kb on - strand, within COO64_RS09735at 79.178 kb on - strand, within COO64_RS09735at 79.354 kb on + strand, within COO64_RS09735at 79.354 kb on + strand, within COO64_RS09735at 79.355 kb on - strand, within COO64_RS09735at 79.355 kb on - strand, within COO64_RS09735at 79.479 kb on - strand, within COO64_RS09735at 79.640 kb on + strand, within COO64_RS09735at 79.640 kb on + strand, within COO64_RS09735at 79.640 kb on + strand, within COO64_RS09735at 79.640 kb on + strand, within COO64_RS09735at 79.640 kb on + strand, within COO64_RS09735at 79.640 kb on + strand, within COO64_RS09735at 79.641 kb on - strand, within COO64_RS09735at 79.641 kb on - strand, within COO64_RS09735at 79.641 kb on - strand, within COO64_RS09735at 79.641 kb on - strand, within COO64_RS09735at 79.641 kb on - strand, within COO64_RS09735

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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77,501 - -0.1
77,668 + COO64_RS09725 0.14 +0.1
77,668 + COO64_RS09725 0.14 +0.3
77,668 + COO64_RS09725 0.14 +0.7
77,669 - COO64_RS09725 0.14 +1.5
77,724 + COO64_RS09725 0.21 +0.3
77,724 + COO64_RS09725 0.21 -0.9
77,725 - COO64_RS09725 0.21 -0.4
77,950 + COO64_RS09725 0.49 -0.3
77,951 - COO64_RS09725 0.50 -0.8
77,951 - COO64_RS09725 0.50 -2.4
77,951 - COO64_RS09725 0.50 -0.8
77,951 - COO64_RS09725 0.50 +1.1
77,951 - COO64_RS09725 0.50 +0.3
77,951 - COO64_RS09725 0.50 +0.9
78,145 + COO64_RS09725 0.74 +0.3
78,146 - COO64_RS09725 0.74 -1.5
78,146 - COO64_RS09725 0.74 +0.2
78,171 + COO64_RS09725 0.77 -0.4
78,238 + COO64_RS09725 0.85 +0.8
78,511 - COO64_RS09730 0.44 -0.4
78,511 - COO64_RS09730 0.44 -1.3
78,707 + -0.2
78,707 + +0.3
78,782 + +0.5
78,791 + -0.6
78,794 - -0.8
78,794 - +0.7
78,794 - +0.1
78,794 - -0.9
78,975 + COO64_RS09735 0.13 -1.0
78,975 + COO64_RS09735 0.13 +0.6
78,975 + COO64_RS09735 0.13 -0.3
78,976 - COO64_RS09735 0.13 -0.6
78,976 - COO64_RS09735 0.13 -0.2
78,976 - COO64_RS09735 0.13 -0.5
78,976 - COO64_RS09735 0.13 +1.6
78,976 - COO64_RS09735 0.13 -1.7
78,976 - COO64_RS09735 0.13 -1.1
79,177 + COO64_RS09735 0.26 -0.2
79,177 + COO64_RS09735 0.26 +0.4
79,178 - COO64_RS09735 0.26 -0.2
79,178 - COO64_RS09735 0.26 +0.3
79,178 - COO64_RS09735 0.26 +0.2
79,178 - COO64_RS09735 0.26 -0.2
79,178 - COO64_RS09735 0.26 +0.7
79,354 + COO64_RS09735 0.38 -0.1
79,354 + COO64_RS09735 0.38 +1.3
79,355 - COO64_RS09735 0.38 -0.0
79,355 - COO64_RS09735 0.38 -2.4
79,479 - COO64_RS09735 0.47 +0.6
79,640 + COO64_RS09735 0.57 -1.0
79,640 + COO64_RS09735 0.57 +0.1
79,640 + COO64_RS09735 0.57 -0.5
79,640 + COO64_RS09735 0.57 -0.5
79,640 + COO64_RS09735 0.57 -0.1
79,640 + COO64_RS09735 0.57 -0.1
79,641 - COO64_RS09735 0.58 +0.2
79,641 - COO64_RS09735 0.58 +0.6
79,641 - COO64_RS09735 0.58 -0.5
79,641 - COO64_RS09735 0.58 -0.3
79,641 - COO64_RS09735 0.58 -0.4

Or see this region's nucleotide sequence