Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01229

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01227 and MPMX26_01228 overlap by 4 nucleotidesMPMX26_01228 and MPMX26_01229 are separated by 22 nucleotidesMPMX26_01229 and MPMX26_01230 are separated by 96 nucleotidesMPMX26_01230 and MPMX26_01231 are separated by 44 nucleotides MPMX26_01227: MPMX26_01227 - hypothetical protein, at 1,300,521 to 1,300,907 _01227 MPMX26_01228: MPMX26_01228 - Type II secretion system protein J, at 1,300,904 to 1,301,539 _01228 MPMX26_01229: MPMX26_01229 - Type II secretion system protein K, at 1,301,562 to 1,302,506 _01229 MPMX26_01230: MPMX26_01230 - hypothetical protein, at 1,302,603 to 1,303,199 _01230 MPMX26_01231: MPMX26_01231 - Uracil-DNA glycosylase, at 1,303,244 to 1,303,957 _01231 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1300.700 kb on + strand, within MPMX26_01227at 1300.709 kb on + strand, within MPMX26_01227at 1300.743 kb on + strand, within MPMX26_01227at 1300.823 kb on + strand, within MPMX26_01227at 1300.823 kb on + strand, within MPMX26_01227at 1300.831 kb on - strand, within MPMX26_01227at 1300.833 kb on + strand, within MPMX26_01227at 1300.930 kb on + strandat 1300.978 kb on + strand, within MPMX26_01228at 1302.585 kb on + strandat 1302.635 kb on + strandat 1302.635 kb on + strandat 1302.635 kb on + strandat 1302.635 kb on + strandat 1302.700 kb on + strand, within MPMX26_01230at 1302.713 kb on + strand, within MPMX26_01230at 1302.747 kb on + strand, within MPMX26_01230at 1302.747 kb on + strand, within MPMX26_01230at 1302.747 kb on + strand, within MPMX26_01230at 1302.754 kb on + strand, within MPMX26_01230at 1302.764 kb on + strand, within MPMX26_01230at 1302.764 kb on + strand, within MPMX26_01230at 1302.764 kb on + strand, within MPMX26_01230at 1302.796 kb on + strand, within MPMX26_01230at 1302.796 kb on + strand, within MPMX26_01230at 1302.796 kb on + strand, within MPMX26_01230at 1302.807 kb on + strand, within MPMX26_01230at 1302.839 kb on + strand, within MPMX26_01230at 1302.841 kb on + strand, within MPMX26_01230at 1302.841 kb on + strand, within MPMX26_01230at 1302.872 kb on + strand, within MPMX26_01230at 1302.874 kb on + strand, within MPMX26_01230at 1302.874 kb on + strand, within MPMX26_01230at 1302.888 kb on + strand, within MPMX26_01230at 1302.888 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.900 kb on + strand, within MPMX26_01230at 1302.900 kb on + strand, within MPMX26_01230at 1302.928 kb on + strand, within MPMX26_01230at 1302.933 kb on + strand, within MPMX26_01230at 1302.960 kb on + strand, within MPMX26_01230at 1302.965 kb on + strand, within MPMX26_01230at 1302.981 kb on + strand, within MPMX26_01230at 1303.014 kb on + strand, within MPMX26_01230at 1303.014 kb on + strand, within MPMX26_01230at 1303.014 kb on + strand, within MPMX26_01230at 1303.075 kb on + strand, within MPMX26_01230at 1303.103 kb on + strand, within MPMX26_01230at 1303.141 kb on + strandat 1303.141 kb on + strandat 1303.141 kb on + strandat 1303.220 kb on + strandat 1303.251 kb on + strandat 1303.256 kb on + strandat 1303.282 kb on + strandat 1303.282 kb on + strandat 1303.340 kb on + strand, within MPMX26_01231at 1303.431 kb on + strand, within MPMX26_01231at 1303.437 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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1,300,700 + MPMX26_01227 0.46 +0.7
1,300,709 + MPMX26_01227 0.49 -1.8
1,300,743 + MPMX26_01227 0.57 -1.2
1,300,823 + MPMX26_01227 0.78 -1.2
1,300,823 + MPMX26_01227 0.78 -0.1
1,300,831 - MPMX26_01227 0.80 -1.5
1,300,833 + MPMX26_01227 0.81 +0.6
1,300,930 + +0.2
1,300,978 + MPMX26_01228 0.12 -1.7
1,302,585 + -1.4
1,302,635 + -1.1
1,302,635 + -1.8
1,302,635 + -2.0
1,302,635 + -1.2
1,302,700 + MPMX26_01230 0.16 -2.7
1,302,713 + MPMX26_01230 0.18 -3.0
1,302,747 + MPMX26_01230 0.24 -1.9
1,302,747 + MPMX26_01230 0.24 -2.2
1,302,747 + MPMX26_01230 0.24 +0.1
1,302,754 + MPMX26_01230 0.25 -2.3
1,302,764 + MPMX26_01230 0.27 -3.1
1,302,764 + MPMX26_01230 0.27 -2.0
1,302,764 + MPMX26_01230 0.27 -0.5
1,302,796 + MPMX26_01230 0.32 -1.6
1,302,796 + MPMX26_01230 0.32 -0.1
1,302,796 + MPMX26_01230 0.32 -3.1
1,302,807 + MPMX26_01230 0.34 -4.3
1,302,839 + MPMX26_01230 0.40 -3.6
1,302,841 + MPMX26_01230 0.40 -2.6
1,302,841 + MPMX26_01230 0.40 -2.9
1,302,872 + MPMX26_01230 0.45 -2.7
1,302,874 + MPMX26_01230 0.45 -2.0
1,302,874 + MPMX26_01230 0.45 -1.5
1,302,888 + MPMX26_01230 0.48 -2.4
1,302,888 + MPMX26_01230 0.48 -2.1
1,302,898 + MPMX26_01230 0.49 -1.6
1,302,898 + MPMX26_01230 0.49 -2.6
1,302,898 + MPMX26_01230 0.49 -0.6
1,302,898 + MPMX26_01230 0.49 -2.3
1,302,900 + MPMX26_01230 0.50 -1.4
1,302,900 + MPMX26_01230 0.50 -1.9
1,302,928 + MPMX26_01230 0.54 -1.3
1,302,933 + MPMX26_01230 0.55 -2.2
1,302,960 + MPMX26_01230 0.60 -3.6
1,302,965 + MPMX26_01230 0.61 -2.6
1,302,981 + MPMX26_01230 0.63 -1.7
1,303,014 + MPMX26_01230 0.69 -2.5
1,303,014 + MPMX26_01230 0.69 -2.3
1,303,014 + MPMX26_01230 0.69 -1.4
1,303,075 + MPMX26_01230 0.79 -2.7
1,303,103 + MPMX26_01230 0.84 -2.7
1,303,141 + -3.0
1,303,141 + -3.5
1,303,141 + -2.2
1,303,220 + -2.2
1,303,251 + -3.0
1,303,256 + -0.5
1,303,282 + -1.3
1,303,282 + -2.0
1,303,340 + MPMX26_01231 0.13 -1.4
1,303,431 + MPMX26_01231 0.26 -3.3
1,303,437 + MPMX26_01231 0.27 -3.2
1,303,447 + MPMX26_01231 0.28 -1.4
1,303,447 + MPMX26_01231 0.28 -0.0
1,303,447 + MPMX26_01231 0.28 -2.3
1,303,447 + MPMX26_01231 0.28 -1.6
1,303,447 + MPMX26_01231 0.28 -1.1
1,303,447 + MPMX26_01231 0.28 -1.9
1,303,447 + MPMX26_01231 0.28 -1.8
1,303,447 + MPMX26_01231 0.28 -2.2
1,303,447 + MPMX26_01231 0.28 -1.7
1,303,447 + MPMX26_01231 0.28 -1.8
1,303,447 + MPMX26_01231 0.28 -1.5
1,303,447 + MPMX26_01231 0.28 -0.3
1,303,447 + MPMX26_01231 0.28 -1.7
1,303,485 + MPMX26_01231 0.34 -2.4
1,303,485 + MPMX26_01231 0.34 -1.0
1,303,485 + MPMX26_01231 0.34 -4.0
1,303,485 + MPMX26_01231 0.34 -3.2
1,303,485 + MPMX26_01231 0.34 -2.9
1,303,490 + MPMX26_01231 0.34 -1.8
1,303,490 + MPMX26_01231 0.34 -1.4
1,303,490 + MPMX26_01231 0.34 -2.3
1,303,490 + MPMX26_01231 0.34 -1.3
1,303,490 + MPMX26_01231 0.34 -1.7
1,303,490 + MPMX26_01231 0.34 -1.4

Or see this region's nucleotide sequence