Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00043

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00042 and MPMX26_00043 are separated by 145 nucleotidesMPMX26_00043 and MPMX26_00044 are separated by 69 nucleotides MPMX26_00042: MPMX26_00042 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 45,734 to 46,579 _00042 MPMX26_00043: MPMX26_00043 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 46,725 to 47,303 _00043 MPMX26_00044: MPMX26_00044 - putative lipid II flippase MurJ, at 47,373 to 48,914 _00044 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.731 kb on + strandat 45.731 kb on + strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.765 kb on + strandat 45.782 kb on - strandat 45.803 kb on + strandat 45.853 kb on - strand, within MPMX26_00042at 45.859 kb on - strand, within MPMX26_00042at 45.892 kb on - strand, within MPMX26_00042at 45.892 kb on - strand, within MPMX26_00042at 45.920 kb on - strand, within MPMX26_00042at 45.926 kb on - strand, within MPMX26_00042at 45.940 kb on - strand, within MPMX26_00042at 45.946 kb on - strand, within MPMX26_00042at 45.950 kb on + strand, within MPMX26_00042at 45.969 kb on - strand, within MPMX26_00042at 45.977 kb on + strand, within MPMX26_00042at 45.985 kb on - strand, within MPMX26_00042at 45.985 kb on - strand, within MPMX26_00042at 45.985 kb on - strand, within MPMX26_00042at 45.999 kb on + strand, within MPMX26_00042at 46.006 kb on - strand, within MPMX26_00042at 46.006 kb on - strand, within MPMX26_00042at 46.009 kb on + strand, within MPMX26_00042at 46.016 kb on + strand, within MPMX26_00042at 46.016 kb on + strand, within MPMX26_00042at 46.016 kb on + strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.024 kb on - strand, within MPMX26_00042at 46.024 kb on - strand, within MPMX26_00042at 46.024 kb on - strand, within MPMX26_00042at 46.039 kb on + strand, within MPMX26_00042at 46.042 kb on - strand, within MPMX26_00042at 46.042 kb on - strand, within MPMX26_00042at 46.047 kb on - strand, within MPMX26_00042at 46.047 kb on - strand, within MPMX26_00042at 46.047 kb on - strand, within MPMX26_00042at 46.086 kb on + strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.096 kb on + strand, within MPMX26_00042at 46.104 kb on - strand, within MPMX26_00042at 46.124 kb on - strand, within MPMX26_00042at 46.132 kb on - strand, within MPMX26_00042at 46.142 kb on - strand, within MPMX26_00042at 46.150 kb on + strand, within MPMX26_00042at 46.164 kb on - strand, within MPMX26_00042at 46.165 kb on - strand, within MPMX26_00042at 46.169 kb on - strand, within MPMX26_00042at 46.175 kb on - strand, within MPMX26_00042at 46.175 kb on - strand, within MPMX26_00042at 46.175 kb on - strand, within MPMX26_00042at 46.221 kb on - strand, within MPMX26_00042at 46.240 kb on - strand, within MPMX26_00042at 46.240 kb on - strand, within MPMX26_00042at 46.262 kb on + strand, within MPMX26_00042at 46.262 kb on + strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.276 kb on + strand, within MPMX26_00042at 46.276 kb on + strand, within MPMX26_00042at 46.282 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.293 kb on - strand, within MPMX26_00042at 46.310 kb on - strand, within MPMX26_00042at 46.341 kb on - strand, within MPMX26_00042at 46.368 kb on + strand, within MPMX26_00042at 46.376 kb on - strand, within MPMX26_00042at 46.382 kb on - strand, within MPMX26_00042at 46.397 kb on - strand, within MPMX26_00042at 46.397 kb on - strand, within MPMX26_00042at 46.401 kb on - strand, within MPMX26_00042at 46.403 kb on + strand, within MPMX26_00042at 46.412 kb on + strand, within MPMX26_00042at 46.415 kb on - strand, within MPMX26_00042at 46.415 kb on - strand, within MPMX26_00042at 46.415 kb on - strand, within MPMX26_00042at 46.417 kb on + strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.425 kb on - strand, within MPMX26_00042at 46.425 kb on - strand, within MPMX26_00042at 46.434 kb on - strand, within MPMX26_00042at 46.435 kb on + strand, within MPMX26_00042at 46.488 kb on + strand, within MPMX26_00042at 46.496 kb on - strandat 46.498 kb on + strandat 46.501 kb on - strandat 46.514 kb on - strandat 46.536 kb on - strandat 46.559 kb on - strandat 46.560 kb on - strandat 46.599 kb on - strandat 46.629 kb on - strandat 46.630 kb on - strandat 46.630 kb on - strandat 46.637 kb on + strandat 46.737 kb on + strandat 46.776 kb on + strandat 46.781 kb on + strandat 46.781 kb on + strandat 46.846 kb on + strand, within MPMX26_00043at 46.847 kb on + strand, within MPMX26_00043at 46.868 kb on + strand, within MPMX26_00043at 46.877 kb on + strand, within MPMX26_00043at 46.884 kb on + strand, within MPMX26_00043at 46.940 kb on + strand, within MPMX26_00043at 46.950 kb on + strand, within MPMX26_00043at 46.950 kb on + strand, within MPMX26_00043at 46.955 kb on + strand, within MPMX26_00043at 46.955 kb on + strand, within MPMX26_00043at 46.974 kb on + strand, within MPMX26_00043at 46.979 kb on + strand, within MPMX26_00043at 46.979 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 47.046 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.056 kb on + strand, within MPMX26_00043at 47.056 kb on + strand, within MPMX26_00043at 47.056 kb on + strand, within MPMX26_00043at 47.063 kb on + strand, within MPMX26_00043at 47.147 kb on + strand, within MPMX26_00043at 47.157 kb on + strand, within MPMX26_00043at 47.168 kb on + strand, within MPMX26_00043at 47.168 kb on + strand, within MPMX26_00043at 47.244 kb on + strand, within MPMX26_00043

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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45,731 + +0.5
45,731 + -0.2
45,739 - -1.2
45,739 - -0.0
45,739 - +0.0
45,739 - -0.1
45,765 + +0.3
45,782 - -1.3
45,803 + +0.2
45,853 - MPMX26_00042 0.14 +0.8
45,859 - MPMX26_00042 0.15 +1.2
45,892 - MPMX26_00042 0.19 +0.1
45,892 - MPMX26_00042 0.19 +0.2
45,920 - MPMX26_00042 0.22 +0.2
45,926 - MPMX26_00042 0.23 +1.2
45,940 - MPMX26_00042 0.24 -0.2
45,946 - MPMX26_00042 0.25 -0.1
45,950 + MPMX26_00042 0.26 +0.0
45,969 - MPMX26_00042 0.28 -0.3
45,977 + MPMX26_00042 0.29 -0.7
45,985 - MPMX26_00042 0.30 -1.4
45,985 - MPMX26_00042 0.30 -0.1
45,985 - MPMX26_00042 0.30 +0.1
45,999 + MPMX26_00042 0.31 -0.3
46,006 - MPMX26_00042 0.32 +0.4
46,006 - MPMX26_00042 0.32 +0.1
46,009 + MPMX26_00042 0.33 -0.4
46,016 + MPMX26_00042 0.33 -1.3
46,016 + MPMX26_00042 0.33 -0.1
46,016 + MPMX26_00042 0.33 -0.4
46,017 - MPMX26_00042 0.33 -0.5
46,017 - MPMX26_00042 0.33 +0.3
46,017 - MPMX26_00042 0.33 +0.3
46,017 - MPMX26_00042 0.33 +0.1
46,024 - MPMX26_00042 0.34 -0.2
46,024 - MPMX26_00042 0.34 -0.8
46,024 - MPMX26_00042 0.34 -0.1
46,039 + MPMX26_00042 0.36 +0.6
46,042 - MPMX26_00042 0.36 -0.3
46,042 - MPMX26_00042 0.36 -0.4
46,047 - MPMX26_00042 0.37 +0.1
46,047 - MPMX26_00042 0.37 -0.1
46,047 - MPMX26_00042 0.37 +0.0
46,086 + MPMX26_00042 0.42 +0.2
46,094 - MPMX26_00042 0.43 -0.7
46,094 - MPMX26_00042 0.43 +0.2
46,094 - MPMX26_00042 0.43 -0.0
46,094 - MPMX26_00042 0.43 +0.3
46,096 + MPMX26_00042 0.43 -0.3
46,104 - MPMX26_00042 0.44 -0.1
46,124 - MPMX26_00042 0.46 +0.5
46,132 - MPMX26_00042 0.47 -0.5
46,142 - MPMX26_00042 0.48 +0.5
46,150 + MPMX26_00042 0.49 +0.8
46,164 - MPMX26_00042 0.51 +0.2
46,165 - MPMX26_00042 0.51 -0.1
46,169 - MPMX26_00042 0.51 -0.3
46,175 - MPMX26_00042 0.52 +0.2
46,175 - MPMX26_00042 0.52 +0.0
46,175 - MPMX26_00042 0.52 +0.0
46,221 - MPMX26_00042 0.58 -0.1
46,240 - MPMX26_00042 0.60 +0.2
46,240 - MPMX26_00042 0.60 +0.1
46,262 + MPMX26_00042 0.62 +2.0
46,262 + MPMX26_00042 0.62 -0.3
46,270 - MPMX26_00042 0.63 -0.3
46,270 - MPMX26_00042 0.63 +0.4
46,270 - MPMX26_00042 0.63 +0.1
46,270 - MPMX26_00042 0.63 +0.5
46,270 - MPMX26_00042 0.63 +0.7
46,276 + MPMX26_00042 0.64 -0.3
46,276 + MPMX26_00042 0.64 -0.8
46,282 - MPMX26_00042 0.65 -0.4
46,284 - MPMX26_00042 0.65 +0.3
46,284 - MPMX26_00042 0.65 +0.1
46,284 - MPMX26_00042 0.65 -0.5
46,284 - MPMX26_00042 0.65 -0.3
46,293 - MPMX26_00042 0.66 -0.2
46,310 - MPMX26_00042 0.68 +0.6
46,341 - MPMX26_00042 0.72 +0.4
46,368 + MPMX26_00042 0.75 +1.0
46,376 - MPMX26_00042 0.76 +0.3
46,382 - MPMX26_00042 0.77 -0.6
46,397 - MPMX26_00042 0.78 +0.5
46,397 - MPMX26_00042 0.78 -1.6
46,401 - MPMX26_00042 0.79 +0.2
46,403 + MPMX26_00042 0.79 +0.7
46,412 + MPMX26_00042 0.80 -0.3
46,415 - MPMX26_00042 0.80 +0.1
46,415 - MPMX26_00042 0.80 -0.2
46,415 - MPMX26_00042 0.80 -0.1
46,417 + MPMX26_00042 0.81 +0.2
46,420 - MPMX26_00042 0.81 +0.4
46,420 - MPMX26_00042 0.81 +0.1
46,420 - MPMX26_00042 0.81 -0.0
46,420 - MPMX26_00042 0.81 -0.3
46,420 - MPMX26_00042 0.81 +0.4
46,425 - MPMX26_00042 0.82 -0.0
46,425 - MPMX26_00042 0.82 +0.1
46,434 - MPMX26_00042 0.83 -0.5
46,435 + MPMX26_00042 0.83 +0.0
46,488 + MPMX26_00042 0.89 -0.1
46,496 - +0.5
46,498 + -0.2
46,501 - -0.6
46,514 - -0.4
46,536 - -0.0
46,559 - -0.0
46,560 - +0.4
46,599 - +0.3
46,629 - +1.3
46,630 - -0.1
46,630 - -0.2
46,637 + +0.2
46,737 + -1.5
46,776 + -0.6
46,781 + -0.5
46,781 + -0.5
46,846 + MPMX26_00043 0.21 -2.0
46,847 + MPMX26_00043 0.21 -1.2
46,868 + MPMX26_00043 0.25 -0.1
46,877 + MPMX26_00043 0.26 -0.1
46,884 + MPMX26_00043 0.27 -0.4
46,940 + MPMX26_00043 0.37 -0.3
46,950 + MPMX26_00043 0.39 -0.2
46,950 + MPMX26_00043 0.39 -0.2
46,955 + MPMX26_00043 0.40 -0.8
46,955 + MPMX26_00043 0.40 -1.6
46,974 + MPMX26_00043 0.43 -0.7
46,979 + MPMX26_00043 0.44 -0.4
46,979 + MPMX26_00043 0.44 +0.7
46,992 + MPMX26_00043 0.46 -1.2
46,992 + MPMX26_00043 0.46 -0.3
46,992 + MPMX26_00043 0.46 -0.5
46,992 + MPMX26_00043 0.46 -2.4
46,992 + MPMX26_00043 0.46 +0.4
47,046 + MPMX26_00043 0.55 -0.8
47,051 + MPMX26_00043 0.56 +0.5
47,051 + MPMX26_00043 0.56 -0.4
47,051 + MPMX26_00043 0.56 +0.2
47,051 + MPMX26_00043 0.56 -0.7
47,051 + MPMX26_00043 0.56 -0.3
47,056 + MPMX26_00043 0.57 +0.2
47,056 + MPMX26_00043 0.57 -0.6
47,056 + MPMX26_00043 0.57 -1.4
47,063 + MPMX26_00043 0.58 -0.6
47,147 + MPMX26_00043 0.73 -0.5
47,157 + MPMX26_00043 0.75 -1.7
47,168 + MPMX26_00043 0.77 -2.5
47,168 + MPMX26_00043 0.77 +0.4
47,244 + MPMX26_00043 0.90 -0.6

Or see this region's nucleotide sequence