Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06086 and MPMX19_06087 are separated by 263 nucleotides MPMX19_06087 and MPMX19_06088 are separated by 46 nucleotides
MPMX19_06086: MPMX19_06086 - Citrate synthase, at 261,530 to 262,861
_06086
MPMX19_06087: MPMX19_06087 - hypothetical protein, at 263,125 to 263,370
_06087
MPMX19_06088: MPMX19_06088 - Sensor histidine kinase RcsC, at 263,417 to 267,214
_06088
Position (kb) 263
264 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.240 kb on - strand, within MPMX19_06086 at 262.240 kb on - strand, within MPMX19_06086 at 262.240 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.289 kb on - strand, within MPMX19_06086 at 262.289 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.492 kb on - strand, within MPMX19_06086 at 262.492 kb on - strand, within MPMX19_06086 at 262.492 kb on - strand, within MPMX19_06086 at 262.492 kb on - strand, within MPMX19_06086 at 262.645 kb on - strand, within MPMX19_06086 at 262.702 kb on - strand, within MPMX19_06086 at 263.044 kb on - strand at 263.044 kb on - strand at 263.044 kb on - strand at 263.044 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.112 kb on - strand at 263.937 kb on + strand, within MPMX19_06088 at 263.937 kb on + strand, within MPMX19_06088 at 263.937 kb on + strand, within MPMX19_06088 at 263.937 kb on + strand, within MPMX19_06088 at 263.937 kb on + strand, within MPMX19_06088 at 263.937 kb on + strand, within MPMX19_06088 at 263.937 kb on + strand, within MPMX19_06088 at 263.938 kb on - strand, within MPMX19_06088 at 263.938 kb on - strand, within MPMX19_06088 at 263.938 kb on - strand, within MPMX19_06088 at 263.938 kb on - strand, within MPMX19_06088 at 263.938 kb on - strand, within MPMX19_06088 at 263.938 kb on - strand, within MPMX19_06088 at 264.165 kb on + strand, within MPMX19_06088 at 264.165 kb on + strand, within MPMX19_06088 at 264.166 kb on - strand, within MPMX19_06088
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 262,222 - MPMX19_06086 0.52 -0.8 262,222 - MPMX19_06086 0.52 +0.2 262,222 - MPMX19_06086 0.52 +0.2 262,222 - MPMX19_06086 0.52 -0.1 262,222 - MPMX19_06086 0.52 +0.4 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 +1.3 262,222 - MPMX19_06086 0.52 -0.7 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 -0.3 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 +0.4 262,240 - MPMX19_06086 0.53 -0.2 262,240 - MPMX19_06086 0.53 -0.7 262,240 - MPMX19_06086 0.53 +0.1 262,285 - MPMX19_06086 0.57 +1.6 262,285 - MPMX19_06086 0.57 -0.6 262,285 - MPMX19_06086 0.57 -1.5 262,285 - MPMX19_06086 0.57 -1.4 262,285 - MPMX19_06086 0.57 +0.9 262,285 - MPMX19_06086 0.57 -1.8 262,289 - MPMX19_06086 0.57 -1.3 262,289 - MPMX19_06086 0.57 -1.4 262,384 - MPMX19_06086 0.64 -0.8 262,384 - MPMX19_06086 0.64 -1.1 262,384 - MPMX19_06086 0.64 -0.7 262,384 - MPMX19_06086 0.64 -0.1 262,384 - MPMX19_06086 0.64 -1.0 262,384 - MPMX19_06086 0.64 -1.8 262,384 - MPMX19_06086 0.64 -0.6 262,384 - MPMX19_06086 0.64 -1.0 262,492 - MPMX19_06086 0.72 -2.6 262,492 - MPMX19_06086 0.72 -0.1 262,492 - MPMX19_06086 0.72 -0.3 262,492 - MPMX19_06086 0.72 -0.5 262,645 - MPMX19_06086 0.84 -1.0 262,702 - MPMX19_06086 0.88 -0.1 263,044 - +0.1 263,044 - -2.9 263,044 - -1.4 263,044 - +1.3 263,112 - -0.6 263,112 - +0.2 263,112 - +0.2 263,112 - -1.9 263,112 - -1.6 263,112 - -0.4 263,112 - -0.5 263,112 - -1.0 263,937 + MPMX19_06088 0.14 -1.5 263,937 + MPMX19_06088 0.14 +0.3 263,937 + MPMX19_06088 0.14 +0.3 263,937 + MPMX19_06088 0.14 -0.1 263,937 + MPMX19_06088 0.14 -0.1 263,937 + MPMX19_06088 0.14 -1.3 263,937 + MPMX19_06088 0.14 -0.8 263,938 - MPMX19_06088 0.14 +0.6 263,938 - MPMX19_06088 0.14 -0.9 263,938 - MPMX19_06088 0.14 -1.3 263,938 - MPMX19_06088 0.14 +0.6 263,938 - MPMX19_06088 0.14 +1.4 263,938 - MPMX19_06088 0.14 -1.4 264,165 + MPMX19_06088 0.20 +1.0 264,165 + MPMX19_06088 0.20 -0.5 264,166 - MPMX19_06088 0.20 -1.8
Or see this region's nucleotide sequence