Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05237 and MPMX19_05238 are separated by 0 nucleotides MPMX19_05238 and MPMX19_05239 are separated by 46 nucleotides
MPMX19_05237: MPMX19_05237 - Sensor histidine kinase RcsC, at 763,651 to 766,338
_05237
MPMX19_05238: MPMX19_05238 - Periplasmic dipeptide transport protein, at 766,339 to 767,961
_05238
MPMX19_05239: MPMX19_05239 - hypothetical protein, at 768,008 to 769,462
_05239
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.850 kb on + strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.851 kb on - strand, within MPMX19_05237 at 765.935 kb on - strand, within MPMX19_05237 at 766.078 kb on + strand at 766.189 kb on + strand at 766.189 kb on + strand at 766.190 kb on - strand at 766.190 kb on - strand at 766.190 kb on - strand at 766.191 kb on + strand at 766.192 kb on - strand at 766.294 kb on - strand at 766.448 kb on - strand at 766.591 kb on + strand, within MPMX19_05238 at 766.591 kb on + strand, within MPMX19_05238 at 766.592 kb on - strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.666 kb on + strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.667 kb on - strand, within MPMX19_05238 at 766.668 kb on + strand, within MPMX19_05238 at 766.669 kb on - strand, within MPMX19_05238 at 766.708 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.747 kb on - strand, within MPMX19_05238 at 766.765 kb on + strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.766 kb on - strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.771 kb on + strand, within MPMX19_05238 at 766.772 kb on - strand, within MPMX19_05238 at 766.831 kb on - strand, within MPMX19_05238 at 766.962 kb on + strand, within MPMX19_05238 at 766.963 kb on - strand, within MPMX19_05238 at 766.963 kb on - strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 766.999 kb on + strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.000 kb on - strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.023 kb on + strand, within MPMX19_05238 at 767.024 kb on - strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.077 kb on + strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.078 kb on - strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.227 kb on + strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.228 kb on - strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.229 kb on + strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.230 kb on - strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.326 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.380 kb on + strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.381 kb on - strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.479 kb on + strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.480 kb on - strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.500 kb on + strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.501 kb on - strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.596 kb on + strand, within MPMX19_05238 at 767.597 kb on - strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.638 kb on + strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.639 kb on - strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.680 kb on + strand, within MPMX19_05238 at 767.681 kb on - strand, within MPMX19_05238 at 767.809 kb on + strand at 767.906 kb on - strand at 767.963 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.971 kb on + strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 767.972 kb on - strand at 768.392 kb on + strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.393 kb on - strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.407 kb on + strand, within MPMX19_05239 at 768.408 kb on - strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.626 kb on + strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.627 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239 at 768.648 kb on - strand, within MPMX19_05239
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 765,850 + MPMX19_05237 0.82 -1.3 765,850 + MPMX19_05237 0.82 -0.3 765,850 + MPMX19_05237 0.82 -1.3 765,850 + MPMX19_05237 0.82 -0.3 765,850 + MPMX19_05237 0.82 -1.6 765,850 + MPMX19_05237 0.82 -1.0 765,851 - MPMX19_05237 0.82 -1.7 765,851 - MPMX19_05237 0.82 +0.6 765,851 - MPMX19_05237 0.82 +1.6 765,851 - MPMX19_05237 0.82 +0.4 765,851 - MPMX19_05237 0.82 -0.6 765,935 - MPMX19_05237 0.85 -0.2 766,078 + -0.8 766,189 + -2.1 766,189 + -0.6 766,190 - -0.2 766,190 - +0.4 766,190 - -0.5 766,191 + -1.4 766,192 - +2.8 766,294 - +0.2 766,448 - +0.4 766,591 + MPMX19_05238 0.16 -0.6 766,591 + MPMX19_05238 0.16 -0.7 766,592 - MPMX19_05238 0.16 -0.8 766,666 + MPMX19_05238 0.20 -0.4 766,666 + MPMX19_05238 0.20 +0.3 766,666 + MPMX19_05238 0.20 +0.4 766,666 + MPMX19_05238 0.20 -0.4 766,667 - MPMX19_05238 0.20 +1.0 766,667 - MPMX19_05238 0.20 -0.7 766,667 - MPMX19_05238 0.20 +0.9 766,667 - MPMX19_05238 0.20 -2.2 766,668 + MPMX19_05238 0.20 -0.5 766,669 - MPMX19_05238 0.20 +0.7 766,708 - MPMX19_05238 0.23 -0.9 766,747 - MPMX19_05238 0.25 -0.3 766,747 - MPMX19_05238 0.25 -0.4 766,747 - MPMX19_05238 0.25 -0.5 766,747 - MPMX19_05238 0.25 -1.2 766,765 + MPMX19_05238 0.26 -1.2 766,766 - MPMX19_05238 0.26 +1.6 766,766 - MPMX19_05238 0.26 -1.9 766,766 - MPMX19_05238 0.26 +0.0 766,766 - MPMX19_05238 0.26 -2.7 766,766 - MPMX19_05238 0.26 -0.8 766,771 + MPMX19_05238 0.27 +0.3 766,771 + MPMX19_05238 0.27 -2.2 766,771 + MPMX19_05238 0.27 -1.0 766,771 + MPMX19_05238 0.27 -0.6 766,771 + MPMX19_05238 0.27 -0.2 766,772 - MPMX19_05238 0.27 +0.6 766,831 - MPMX19_05238 0.30 -2.0 766,962 + MPMX19_05238 0.38 -0.6 766,963 - MPMX19_05238 0.38 -0.2 766,963 - MPMX19_05238 0.38 +1.0 766,999 + MPMX19_05238 0.41 +0.7 766,999 + MPMX19_05238 0.41 -1.4 766,999 + MPMX19_05238 0.41 -0.6 766,999 + MPMX19_05238 0.41 +0.0 766,999 + MPMX19_05238 0.41 -1.6 767,000 - MPMX19_05238 0.41 -0.3 767,000 - MPMX19_05238 0.41 -1.3 767,000 - MPMX19_05238 0.41 -0.4 767,000 - MPMX19_05238 0.41 -0.6 767,000 - MPMX19_05238 0.41 +0.2 767,000 - MPMX19_05238 0.41 -0.6 767,000 - MPMX19_05238 0.41 +1.4 767,000 - MPMX19_05238 0.41 +0.4 767,023 + MPMX19_05238 0.42 -1.1 767,023 + MPMX19_05238 0.42 -0.8 767,023 + MPMX19_05238 0.42 -1.6 767,023 + MPMX19_05238 0.42 +0.0 767,023 + MPMX19_05238 0.42 -1.4 767,024 - MPMX19_05238 0.42 +1.6 767,077 + MPMX19_05238 0.45 -2.8 767,077 + MPMX19_05238 0.45 -1.5 767,077 + MPMX19_05238 0.45 +0.5 767,077 + MPMX19_05238 0.45 +0.2 767,077 + MPMX19_05238 0.45 -1.8 767,078 - MPMX19_05238 0.46 -0.1 767,078 - MPMX19_05238 0.46 -0.9 767,078 - MPMX19_05238 0.46 +0.4 767,227 + MPMX19_05238 0.55 -0.2 767,227 + MPMX19_05238 0.55 -0.4 767,227 + MPMX19_05238 0.55 +1.0 767,227 + MPMX19_05238 0.55 +0.3 767,227 + MPMX19_05238 0.55 -1.4 767,227 + MPMX19_05238 0.55 -0.6 767,227 + MPMX19_05238 0.55 -1.6 767,227 + MPMX19_05238 0.55 +0.7 767,227 + MPMX19_05238 0.55 -0.9 767,228 - MPMX19_05238 0.55 -1.1 767,228 - MPMX19_05238 0.55 -0.2 767,228 - MPMX19_05238 0.55 -2.2 767,228 - MPMX19_05238 0.55 -0.8 767,228 - MPMX19_05238 0.55 -0.8 767,228 - MPMX19_05238 0.55 +0.1 767,228 - MPMX19_05238 0.55 +0.6 767,228 - MPMX19_05238 0.55 +0.2 767,228 - MPMX19_05238 0.55 -1.3 767,228 - MPMX19_05238 0.55 -0.1 767,228 - MPMX19_05238 0.55 +0.7 767,228 - MPMX19_05238 0.55 +0.8 767,228 - MPMX19_05238 0.55 -1.3 767,228 - MPMX19_05238 0.55 +0.2 767,229 + MPMX19_05238 0.55 -0.6 767,229 + MPMX19_05238 0.55 -2.1 767,229 + MPMX19_05238 0.55 -2.4 767,229 + MPMX19_05238 0.55 -0.8 767,229 + MPMX19_05238 0.55 -1.8 767,229 + MPMX19_05238 0.55 -0.3 767,229 + MPMX19_05238 0.55 -1.1 767,229 + MPMX19_05238 0.55 -0.8 767,230 - MPMX19_05238 0.55 +0.7 767,230 - MPMX19_05238 0.55 -2.0 767,230 - MPMX19_05238 0.55 -0.8 767,230 - MPMX19_05238 0.55 -0.6 767,230 - MPMX19_05238 0.55 -1.6 767,230 - MPMX19_05238 0.55 -0.9 767,230 - MPMX19_05238 0.55 +2.6 767,230 - MPMX19_05238 0.55 +0.0 767,230 - MPMX19_05238 0.55 -0.2 767,230 - MPMX19_05238 0.55 +0.3 767,230 - MPMX19_05238 0.55 -1.2 767,326 + MPMX19_05238 0.61 -1.2 767,326 + MPMX19_05238 0.61 -0.2 767,326 + MPMX19_05238 0.61 +0.7 767,380 + MPMX19_05238 0.64 -0.6 767,380 + MPMX19_05238 0.64 -0.1 767,380 + MPMX19_05238 0.64 -0.3 767,380 + MPMX19_05238 0.64 -1.2 767,380 + MPMX19_05238 0.64 -0.7 767,380 + MPMX19_05238 0.64 +0.3 767,380 + MPMX19_05238 0.64 -0.6 767,380 + MPMX19_05238 0.64 -0.7 767,380 + MPMX19_05238 0.64 -1.5 767,380 + MPMX19_05238 0.64 -1.2 767,381 - MPMX19_05238 0.64 -1.8 767,381 - MPMX19_05238 0.64 -0.1 767,381 - MPMX19_05238 0.64 -1.0 767,381 - MPMX19_05238 0.64 +0.8 767,381 - MPMX19_05238 0.64 +1.0 767,381 - MPMX19_05238 0.64 -0.1 767,381 - MPMX19_05238 0.64 -0.9 767,381 - MPMX19_05238 0.64 -1.0 767,381 - MPMX19_05238 0.64 +0.0 767,381 - MPMX19_05238 0.64 +0.2 767,381 - MPMX19_05238 0.64 -0.2 767,381 - MPMX19_05238 0.64 -2.2 767,479 + MPMX19_05238 0.70 -1.0 767,479 + MPMX19_05238 0.70 -0.3 767,479 + MPMX19_05238 0.70 +0.7 767,480 - MPMX19_05238 0.70 -0.4 767,480 - MPMX19_05238 0.70 +0.0 767,480 - MPMX19_05238 0.70 +0.2 767,480 - MPMX19_05238 0.70 -0.6 767,480 - MPMX19_05238 0.70 -1.1 767,500 + MPMX19_05238 0.72 -0.2 767,500 + MPMX19_05238 0.72 -1.1 767,500 + MPMX19_05238 0.72 -1.0 767,501 - MPMX19_05238 0.72 -0.5 767,501 - MPMX19_05238 0.72 -0.4 767,501 - MPMX19_05238 0.72 +0.1 767,501 - MPMX19_05238 0.72 +0.2 767,596 + MPMX19_05238 0.77 -1.2 767,596 + MPMX19_05238 0.77 -1.1 767,596 + MPMX19_05238 0.77 -0.1 767,597 - MPMX19_05238 0.78 -2.4 767,638 + MPMX19_05238 0.80 -0.5 767,638 + MPMX19_05238 0.80 -1.6 767,638 + MPMX19_05238 0.80 -0.8 767,638 + MPMX19_05238 0.80 +1.0 767,638 + MPMX19_05238 0.80 -1.7 767,639 - MPMX19_05238 0.80 -0.7 767,639 - MPMX19_05238 0.80 -1.4 767,639 - MPMX19_05238 0.80 -1.4 767,680 + MPMX19_05238 0.83 -0.8 767,680 + MPMX19_05238 0.83 -0.4 767,680 + MPMX19_05238 0.83 -1.6 767,681 - MPMX19_05238 0.83 -1.2 767,809 + -0.2 767,906 - -1.4 767,963 + -0.3 767,971 + +1.2 767,971 + +1.4 767,971 + -0.0 767,971 + -0.1 767,971 + -1.9 767,971 + -0.3 767,972 - +0.0 767,972 - +0.4 767,972 - -1.6 767,972 - -0.2 767,972 - +0.6 768,392 + MPMX19_05239 0.26 -1.1 768,393 - MPMX19_05239 0.26 -0.7 768,393 - MPMX19_05239 0.26 -0.5 768,393 - MPMX19_05239 0.26 -0.5 768,407 + MPMX19_05239 0.27 +1.2 768,407 + MPMX19_05239 0.27 +0.9 768,407 + MPMX19_05239 0.27 +0.2 768,408 - MPMX19_05239 0.27 -2.1 768,626 + MPMX19_05239 0.42 -0.7 768,626 + MPMX19_05239 0.42 -0.4 768,626 + MPMX19_05239 0.42 -1.3 768,626 + MPMX19_05239 0.42 +0.0 768,626 + MPMX19_05239 0.42 -1.7 768,626 + MPMX19_05239 0.42 -0.4 768,626 + MPMX19_05239 0.42 -1.2 768,626 + MPMX19_05239 0.42 +1.0 768,626 + MPMX19_05239 0.42 +1.2 768,626 + MPMX19_05239 0.42 -1.0 768,627 - MPMX19_05239 0.43 +1.6 768,627 - MPMX19_05239 0.43 +0.4 768,627 - MPMX19_05239 0.43 -2.2 768,627 - MPMX19_05239 0.43 -0.9 768,627 - MPMX19_05239 0.43 -0.9 768,627 - MPMX19_05239 0.43 -1.3 768,627 - MPMX19_05239 0.43 +0.4 768,627 - MPMX19_05239 0.43 -1.2 768,648 - MPMX19_05239 0.44 +0.0 768,648 - MPMX19_05239 0.44 -0.1 768,648 - MPMX19_05239 0.44 -1.0
Or see this region's nucleotide sequence