Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04543 and MPMX19_04544 are separated by 141 nucleotides MPMX19_04544 and MPMX19_04545 are separated by 44 nucleotides MPMX19_04545 and MPMX19_04546 are separated by 119 nucleotides
MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809
_04543
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054
_04546
Position (kb) 916
917
918
919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 915.961 kb on - strand at 915.961 kb on - strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.330 kb on + strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.729 kb on - strand, within MPMX19_04543 at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.302 kb on + strand at 917.303 kb on - strand at 917.303 kb on - strand at 917.446 kb on + strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.509 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.836 kb on + strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 917.837 kb on - strand, within MPMX19_04544 at 918.038 kb on - strand, within MPMX19_04544 at 918.266 kb on - strand, within MPMX19_04544 at 918.266 kb on - strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.382 kb on + strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.383 kb on - strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.475 kb on + strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.476 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.536 kb on - strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.676 kb on + strand, within MPMX19_04544 at 918.677 kb on - strand, within MPMX19_04544 at 918.677 kb on - strand, within MPMX19_04544 at 918.677 kb on - strand, within MPMX19_04544 at 918.703 kb on + strand, within MPMX19_04544 at 918.703 kb on + strand, within MPMX19_04544 at 918.703 kb on + strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.704 kb on - strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.784 kb on + strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 918.785 kb on - strand, within MPMX19_04544 at 919.157 kb on - strand, within MPMX19_04544 at 919.419 kb on + strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.420 kb on - strand, within MPMX19_04544 at 919.636 kb on + strand, within MPMX19_04544 at 919.870 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.885 kb on + strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.886 kb on - strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.987 kb on + strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 919.988 kb on - strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.002 kb on + strand, within MPMX19_04544 at 920.003 kb on - strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.014 kb on + strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.015 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.033 kb on - strand, within MPMX19_04544 at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.161 kb on + strand at 920.162 kb on - strand at 920.162 kb on - strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.284 kb on + strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.285 kb on - strand at 920.576 kb on + strand at 920.576 kb on + strand at 920.577 kb on - strand at 920.938 kb on + strand, within MPMX19_04545 at 920.938 kb on + strand, within MPMX19_04545 at 921.134 kb on - strand, within MPMX19_04545 at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.297 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 915,961 - -0.5 915,961 - -0.5 916,065 + -1.9 916,065 + -1.3 916,065 + +0.3 916,065 + +0.1 916,065 + +0.6 916,065 + +0.1 916,065 + +2.2 916,065 + -0.3 916,066 - -1.3 916,066 - -0.1 916,066 - +1.6 916,066 - -0.4 916,066 - +1.2 916,330 + MPMX19_04543 0.35 -0.4 916,331 - MPMX19_04543 0.35 -1.3 916,331 - MPMX19_04543 0.35 -0.0 916,331 - MPMX19_04543 0.35 -0.6 916,729 - MPMX19_04543 0.89 +1.2 916,786 + -1.2 916,786 + +0.9 916,786 + -0.1 916,786 + -0.2 916,786 + +1.9 916,786 + -1.5 916,786 + -1.5 916,786 + +0.9 916,786 + +1.4 916,786 + -1.7 916,786 + -1.4 916,786 + -0.5 916,786 + -0.6 916,786 + -0.5 916,786 + +0.0 916,786 + -0.7 916,786 + +0.4 916,786 + -2.2 916,786 + -1.1 916,786 + -0.1 916,786 + -0.9 916,786 + -0.3 916,786 + -0.8 916,787 - -0.6 916,787 - +0.1 916,787 - +1.4 916,787 - +0.2 916,787 - +0.1 916,787 - +0.3 916,787 - -1.4 916,787 - +0.4 916,787 - +1.2 916,787 - -0.6 916,787 - +1.3 916,787 - -1.3 916,787 - -0.7 916,787 - -1.4 916,787 - -0.3 916,999 + -1.0 916,999 + -1.3 916,999 + -0.4 916,999 + -0.5 916,999 + +0.2 916,999 + -0.7 916,999 + -0.2 916,999 + +0.4 916,999 + -1.0 916,999 + -1.0 916,999 + -0.8 916,999 + -0.3 916,999 + -0.1 917,000 - +1.1 917,000 - -1.1 917,000 - -0.6 917,000 - -1.0 917,000 - -0.7 917,302 + -1.9 917,303 - -1.4 917,303 - +1.8 917,446 + MPMX19_04544 0.14 -0.1 917,447 - MPMX19_04544 0.14 +0.6 917,447 - MPMX19_04544 0.14 -1.0 917,509 + MPMX19_04544 0.16 +0.6 917,743 + MPMX19_04544 0.22 -0.5 917,743 + MPMX19_04544 0.22 -0.1 917,743 + MPMX19_04544 0.22 -1.8 917,743 + MPMX19_04544 0.22 +1.2 917,743 + MPMX19_04544 0.22 -1.5 917,743 + MPMX19_04544 0.22 +0.4 917,743 + MPMX19_04544 0.22 +1.0 917,743 + MPMX19_04544 0.22 -0.1 917,743 + MPMX19_04544 0.22 -0.8 917,744 - MPMX19_04544 0.22 +0.1 917,744 - MPMX19_04544 0.22 -1.1 917,744 - MPMX19_04544 0.22 -1.6 917,744 - MPMX19_04544 0.22 +0.3 917,744 - MPMX19_04544 0.22 -0.4 917,744 - MPMX19_04544 0.22 -0.2 917,744 - MPMX19_04544 0.22 -1.9 917,744 - MPMX19_04544 0.22 -0.1 917,744 - MPMX19_04544 0.22 +1.0 917,836 + MPMX19_04544 0.25 -2.1 917,837 - MPMX19_04544 0.25 +0.6 917,837 - MPMX19_04544 0.25 -0.6 917,837 - MPMX19_04544 0.25 -0.1 917,837 - MPMX19_04544 0.25 -1.1 917,837 - MPMX19_04544 0.25 -1.1 917,837 - MPMX19_04544 0.25 -0.6 918,038 - MPMX19_04544 0.31 +0.3 918,266 - MPMX19_04544 0.37 -1.0 918,266 - MPMX19_04544 0.37 -2.1 918,382 + MPMX19_04544 0.40 -0.6 918,382 + MPMX19_04544 0.40 -0.1 918,382 + MPMX19_04544 0.40 -0.8 918,382 + MPMX19_04544 0.40 -1.1 918,382 + MPMX19_04544 0.40 -0.1 918,382 + MPMX19_04544 0.40 +0.1 918,382 + MPMX19_04544 0.40 +1.3 918,382 + MPMX19_04544 0.40 +0.4 918,382 + MPMX19_04544 0.40 +0.4 918,382 + MPMX19_04544 0.40 +0.5 918,382 + MPMX19_04544 0.40 +0.3 918,382 + MPMX19_04544 0.40 -1.6 918,382 + MPMX19_04544 0.40 -0.0 918,383 - MPMX19_04544 0.41 -1.1 918,383 - MPMX19_04544 0.41 +0.2 918,383 - MPMX19_04544 0.41 +1.2 918,383 - MPMX19_04544 0.41 -0.5 918,383 - MPMX19_04544 0.41 +0.6 918,475 + MPMX19_04544 0.43 -2.7 918,475 + MPMX19_04544 0.43 -0.3 918,475 + MPMX19_04544 0.43 +0.5 918,475 + MPMX19_04544 0.43 -0.7 918,475 + MPMX19_04544 0.43 -0.6 918,475 + MPMX19_04544 0.43 -0.3 918,476 - MPMX19_04544 0.43 -1.9 918,476 - MPMX19_04544 0.43 -0.2 918,476 - MPMX19_04544 0.43 -1.4 918,476 - MPMX19_04544 0.43 -1.5 918,476 - MPMX19_04544 0.43 +0.6 918,476 - MPMX19_04544 0.43 -0.6 918,476 - MPMX19_04544 0.43 +0.4 918,476 - MPMX19_04544 0.43 -1.8 918,476 - MPMX19_04544 0.43 +0.0 918,536 - MPMX19_04544 0.45 +0.9 918,536 - MPMX19_04544 0.45 -0.6 918,536 - MPMX19_04544 0.45 -0.6 918,536 - MPMX19_04544 0.45 -1.5 918,676 + MPMX19_04544 0.49 -0.2 918,676 + MPMX19_04544 0.49 -0.4 918,676 + MPMX19_04544 0.49 +0.7 918,676 + MPMX19_04544 0.49 -0.4 918,676 + MPMX19_04544 0.49 +0.9 918,677 - MPMX19_04544 0.49 -0.1 918,677 - MPMX19_04544 0.49 -0.9 918,677 - MPMX19_04544 0.49 -0.8 918,703 + MPMX19_04544 0.50 -0.2 918,703 + MPMX19_04544 0.50 +0.9 918,703 + MPMX19_04544 0.50 +1.5 918,704 - MPMX19_04544 0.50 +0.2 918,704 - MPMX19_04544 0.50 +0.3 918,704 - MPMX19_04544 0.50 -0.1 918,704 - MPMX19_04544 0.50 -0.3 918,704 - MPMX19_04544 0.50 -0.9 918,784 + MPMX19_04544 0.52 +1.8 918,784 + MPMX19_04544 0.52 -0.6 918,784 + MPMX19_04544 0.52 +0.8 918,784 + MPMX19_04544 0.52 +1.3 918,784 + MPMX19_04544 0.52 +0.9 918,785 - MPMX19_04544 0.52 -1.3 918,785 - MPMX19_04544 0.52 +0.1 918,785 - MPMX19_04544 0.52 +0.5 918,785 - MPMX19_04544 0.52 +0.8 918,785 - MPMX19_04544 0.52 -0.8 918,785 - MPMX19_04544 0.52 +1.9 918,785 - MPMX19_04544 0.52 -0.1 918,785 - MPMX19_04544 0.52 -2.0 919,157 - MPMX19_04544 0.62 -1.1 919,419 + MPMX19_04544 0.70 +0.2 919,420 - MPMX19_04544 0.70 +0.8 919,420 - MPMX19_04544 0.70 -0.5 919,420 - MPMX19_04544 0.70 +0.7 919,420 - MPMX19_04544 0.70 -1.0 919,636 + MPMX19_04544 0.76 -1.1 919,870 + MPMX19_04544 0.83 -1.3 919,885 + MPMX19_04544 0.83 +0.2 919,885 + MPMX19_04544 0.83 +0.7 919,885 + MPMX19_04544 0.83 -1.2 919,886 - MPMX19_04544 0.83 -1.5 919,886 - MPMX19_04544 0.83 -1.8 919,987 + MPMX19_04544 0.86 -0.4 919,987 + MPMX19_04544 0.86 -0.6 919,987 + MPMX19_04544 0.86 -0.5 919,987 + MPMX19_04544 0.86 -1.6 919,987 + MPMX19_04544 0.86 -0.1 919,987 + MPMX19_04544 0.86 -0.9 919,987 + MPMX19_04544 0.86 +0.8 919,988 - MPMX19_04544 0.86 +0.7 919,988 - MPMX19_04544 0.86 -0.3 920,002 + MPMX19_04544 0.86 +1.2 920,002 + MPMX19_04544 0.86 -0.8 920,002 + MPMX19_04544 0.86 -0.4 920,002 + MPMX19_04544 0.86 -0.8 920,002 + MPMX19_04544 0.86 +1.2 920,003 - MPMX19_04544 0.86 +0.3 920,014 + MPMX19_04544 0.87 +1.2 920,014 + MPMX19_04544 0.87 +1.5 920,014 + MPMX19_04544 0.87 -1.4 920,015 - MPMX19_04544 0.87 +0.4 920,015 - MPMX19_04544 0.87 -1.9 920,033 - MPMX19_04544 0.87 -1.6 920,033 - MPMX19_04544 0.87 -1.8 920,033 - MPMX19_04544 0.87 -0.2 920,161 + +0.8 920,161 + +0.9 920,161 + -1.8 920,161 + -0.4 920,162 - +0.4 920,162 - -0.3 920,284 + -0.6 920,284 + -1.4 920,284 + +0.3 920,284 + -0.8 920,284 + -1.7 920,284 + -0.9 920,284 + -0.1 920,285 - -0.4 920,285 - +0.2 920,285 - +0.2 920,576 + -1.1 920,576 + +0.2 920,577 - +1.0 920,938 + MPMX19_04545 0.60 +1.4 920,938 + MPMX19_04545 0.60 -0.6 921,134 - MPMX19_04545 0.89 -0.3 921,206 + -1.1 921,206 + +0.6 921,206 + +1.5 921,206 + -0.4 921,206 + -1.1 921,206 + -0.3 921,206 + +0.1 921,206 + -0.8 921,207 - -1.0 921,207 - -0.6 921,207 - +0.2 921,207 - -0.8 921,207 - -0.5 921,207 - -0.4 921,297 + -0.5
Or see this region's nucleotide sequence