Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03436 and MPMX19_03437 are separated by 30 nucleotides MPMX19_03437 and MPMX19_03438 are separated by 7 nucleotides MPMX19_03438 and MPMX19_03439 overlap by 4 nucleotides
MPMX19_03436: MPMX19_03436 - hypothetical protein, at 828,279 to 832,529
_03436
MPMX19_03437: MPMX19_03437 - hypothetical protein, at 832,560 to 833,678
_03437
MPMX19_03438: MPMX19_03438 - hypothetical protein, at 833,686 to 834,279
_03438
MPMX19_03439: MPMX19_03439 - hypothetical protein, at 834,276 to 834,860
_03439
Position (kb) 832
833
834 Strain fitness (log2 ratio) -2
-1
0
1 at 831.579 kb on + strand, within MPMX19_03436 at 831.580 kb on - strand, within MPMX19_03436 at 831.580 kb on - strand, within MPMX19_03436 at 831.840 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.954 kb on + strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 831.955 kb on - strand, within MPMX19_03436 at 832.031 kb on + strand, within MPMX19_03436 at 832.032 kb on - strand, within MPMX19_03436 at 832.524 kb on + strand at 832.524 kb on + strand at 832.525 kb on - strand at 832.525 kb on - strand at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.115 kb on + strand, within MPMX19_03437 at 833.116 kb on - strand, within MPMX19_03437 at 833.116 kb on - strand, within MPMX19_03437 at 833.116 kb on - strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.193 kb on + strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.194 kb on - strand, within MPMX19_03437 at 833.494 kb on - strand, within MPMX19_03437 at 833.521 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.557 kb on - strand, within MPMX19_03437 at 833.607 kb on + strand at 833.607 kb on + strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.608 kb on - strand at 833.704 kb on + strand at 833.705 kb on - strand at 833.741 kb on - strand at 833.741 kb on - strand at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.836 kb on + strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.837 kb on - strand, within MPMX19_03438 at 833.846 kb on - strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.872 kb on + strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 833.873 kb on - strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.013 kb on + strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.014 kb on - strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.130 kb on + strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.131 kb on - strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.211 kb on + strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.212 kb on - strand, within MPMX19_03438 at 834.220 kb on + strand at 834.220 kb on + strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.221 kb on - strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.290 kb on + strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.291 kb on - strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.293 kb on + strand at 834.294 kb on - strand at 834.294 kb on - strand at 834.411 kb on + strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439 at 834.412 kb on - strand, within MPMX19_03439
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 831,579 + MPMX19_03436 0.78 +0.2 831,580 - MPMX19_03436 0.78 +1.0 831,580 - MPMX19_03436 0.78 -1.2 831,840 + MPMX19_03436 0.84 -0.3 831,954 + MPMX19_03436 0.86 -0.1 831,954 + MPMX19_03436 0.86 +1.1 831,954 + MPMX19_03436 0.86 -0.4 831,954 + MPMX19_03436 0.86 -0.6 831,954 + MPMX19_03436 0.86 -2.0 831,954 + MPMX19_03436 0.86 -1.8 831,954 + MPMX19_03436 0.86 +0.2 831,954 + MPMX19_03436 0.86 +0.2 831,955 - MPMX19_03436 0.86 -0.1 831,955 - MPMX19_03436 0.86 -0.9 831,955 - MPMX19_03436 0.86 -0.2 831,955 - MPMX19_03436 0.86 +0.4 831,955 - MPMX19_03436 0.86 -1.4 831,955 - MPMX19_03436 0.86 +0.4 831,955 - MPMX19_03436 0.86 -0.3 831,955 - MPMX19_03436 0.86 -1.2 832,031 + MPMX19_03436 0.88 +1.5 832,032 - MPMX19_03436 0.88 -2.4 832,524 + -1.0 832,524 + -0.5 832,525 - +0.5 832,525 - +0.2 833,115 + MPMX19_03437 0.50 -1.0 833,115 + MPMX19_03437 0.50 -2.7 833,115 + MPMX19_03437 0.50 +1.2 833,115 + MPMX19_03437 0.50 -1.4 833,115 + MPMX19_03437 0.50 -1.0 833,115 + MPMX19_03437 0.50 -1.8 833,115 + MPMX19_03437 0.50 -0.6 833,116 - MPMX19_03437 0.50 -1.5 833,116 - MPMX19_03437 0.50 -0.5 833,116 - MPMX19_03437 0.50 -0.8 833,193 + MPMX19_03437 0.57 -0.4 833,193 + MPMX19_03437 0.57 -1.2 833,193 + MPMX19_03437 0.57 -0.9 833,193 + MPMX19_03437 0.57 +0.0 833,193 + MPMX19_03437 0.57 -1.0 833,193 + MPMX19_03437 0.57 -0.0 833,193 + MPMX19_03437 0.57 -1.1 833,193 + MPMX19_03437 0.57 -1.9 833,194 - MPMX19_03437 0.57 -0.5 833,194 - MPMX19_03437 0.57 -0.3 833,194 - MPMX19_03437 0.57 -0.6 833,194 - MPMX19_03437 0.57 -1.3 833,494 - MPMX19_03437 0.83 -0.7 833,521 - MPMX19_03437 0.86 +0.8 833,557 - MPMX19_03437 0.89 -0.8 833,557 - MPMX19_03437 0.89 -0.3 833,557 - MPMX19_03437 0.89 -1.2 833,607 + -0.8 833,607 + -0.7 833,608 - +0.2 833,608 - +0.4 833,608 - +0.4 833,608 - -1.2 833,704 + -1.0 833,705 - -1.6 833,741 - +0.2 833,741 - -0.8 833,836 + MPMX19_03438 0.25 -0.0 833,836 + MPMX19_03438 0.25 -0.7 833,836 + MPMX19_03438 0.25 -1.2 833,836 + MPMX19_03438 0.25 -0.2 833,837 - MPMX19_03438 0.25 -1.0 833,837 - MPMX19_03438 0.25 -1.2 833,837 - MPMX19_03438 0.25 -1.1 833,837 - MPMX19_03438 0.25 -1.1 833,846 - MPMX19_03438 0.27 -1.2 833,872 + MPMX19_03438 0.31 -1.0 833,872 + MPMX19_03438 0.31 +0.6 833,872 + MPMX19_03438 0.31 -0.8 833,872 + MPMX19_03438 0.31 -1.4 833,873 - MPMX19_03438 0.31 +0.4 833,873 - MPMX19_03438 0.31 -1.3 833,873 - MPMX19_03438 0.31 -2.0 833,873 - MPMX19_03438 0.31 -1.6 833,873 - MPMX19_03438 0.31 -0.3 833,873 - MPMX19_03438 0.31 -0.0 833,873 - MPMX19_03438 0.31 -1.5 834,013 + MPMX19_03438 0.55 -1.5 834,013 + MPMX19_03438 0.55 -0.5 834,013 + MPMX19_03438 0.55 -0.3 834,013 + MPMX19_03438 0.55 -0.4 834,013 + MPMX19_03438 0.55 -0.2 834,014 - MPMX19_03438 0.55 +0.0 834,014 - MPMX19_03438 0.55 -0.4 834,014 - MPMX19_03438 0.55 -1.8 834,014 - MPMX19_03438 0.55 +0.7 834,014 - MPMX19_03438 0.55 -1.7 834,014 - MPMX19_03438 0.55 -0.6 834,014 - MPMX19_03438 0.55 +0.8 834,130 + MPMX19_03438 0.75 -1.0 834,130 + MPMX19_03438 0.75 -1.7 834,130 + MPMX19_03438 0.75 -1.6 834,131 - MPMX19_03438 0.75 +0.4 834,131 - MPMX19_03438 0.75 -0.6 834,211 + MPMX19_03438 0.88 -0.9 834,211 + MPMX19_03438 0.88 +0.1 834,211 + MPMX19_03438 0.88 -0.6 834,211 + MPMX19_03438 0.88 -1.4 834,211 + MPMX19_03438 0.88 -1.4 834,211 + MPMX19_03438 0.88 +1.2 834,211 + MPMX19_03438 0.88 -1.6 834,211 + MPMX19_03438 0.88 -1.4 834,211 + MPMX19_03438 0.88 +0.4 834,211 + MPMX19_03438 0.88 -0.8 834,212 - MPMX19_03438 0.89 -0.8 834,212 - MPMX19_03438 0.89 -1.4 834,212 - MPMX19_03438 0.89 -1.4 834,220 + -0.5 834,220 + -1.8 834,221 - -0.2 834,221 - +0.1 834,221 - +0.4 834,221 - -2.6 834,290 + -0.3 834,290 + +0.4 834,290 + +0.7 834,290 + +0.4 834,290 + -0.5 834,291 - -0.5 834,291 - +0.6 834,291 - -1.4 834,291 - -1.2 834,291 - -0.5 834,293 + -1.8 834,293 + +0.7 834,293 + +0.4 834,293 + +0.6 834,293 + -0.7 834,293 + +0.1 834,293 + -0.9 834,293 + -0.6 834,293 + -1.6 834,294 - -1.7 834,294 - -0.9 834,411 + MPMX19_03439 0.23 -0.9 834,412 - MPMX19_03439 0.23 +0.1 834,412 - MPMX19_03439 0.23 +0.1 834,412 - MPMX19_03439 0.23 +0.4
Or see this region's nucleotide sequence