Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03426 and MPMX19_03427 are separated by 159 nucleotides MPMX19_03427 and MPMX19_03428 are separated by 3 nucleotides MPMX19_03428 and MPMX19_03429 overlap by 4 nucleotides
MPMX19_03426: MPMX19_03426 - Trans-aconitate 2-methyltransferase, at 816,992 to 818,419
_03426
MPMX19_03427: MPMX19_03427 - hypothetical protein, at 818,579 to 819,355
_03427
MPMX19_03428: MPMX19_03428 - hypothetical protein, at 819,359 to 821,287
_03428
MPMX19_03429: MPMX19_03429 - hypothetical protein, at 821,284 to 823,326
_03429
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.398 kb on + strand at 818.399 kb on - strand at 818.399 kb on - strand at 818.445 kb on + strand at 818.446 kb on - strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.456 kb on - strand at 818.557 kb on + strand at 818.557 kb on + strand at 818.558 kb on - strand at 818.558 kb on - strand at 819.183 kb on + strand, within MPMX19_03427 at 819.183 kb on + strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.195 kb on - strand, within MPMX19_03427 at 819.195 kb on - strand, within MPMX19_03427 at 819.195 kb on - strand, within MPMX19_03427 at 819.353 kb on + strand at 819.354 kb on - strand at 819.354 kb on - strand at 819.587 kb on + strand, within MPMX19_03428 at 819.587 kb on + strand, within MPMX19_03428 at 819.587 kb on + strand, within MPMX19_03428 at 819.587 kb on + strand, within MPMX19_03428 at 819.587 kb on + strand, within MPMX19_03428 at 819.756 kb on - strand, within MPMX19_03428 at 819.756 kb on - strand, within MPMX19_03428 at 819.901 kb on + strand, within MPMX19_03428 at 819.901 kb on + strand, within MPMX19_03428 at 819.901 kb on + strand, within MPMX19_03428 at 819.901 kb on + strand, within MPMX19_03428 at 819.901 kb on + strand, within MPMX19_03428 at 819.902 kb on - strand, within MPMX19_03428 at 819.902 kb on - strand, within MPMX19_03428 at 819.938 kb on + strand, within MPMX19_03428 at 819.977 kb on + strand, within MPMX19_03428 at 819.977 kb on + strand, within MPMX19_03428 at 819.978 kb on - strand, within MPMX19_03428 at 819.978 kb on - strand, within MPMX19_03428 at 819.978 kb on - strand, within MPMX19_03428 at 819.978 kb on - strand, within MPMX19_03428 at 819.978 kb on - strand, within MPMX19_03428 at 820.085 kb on + strand, within MPMX19_03428 at 820.085 kb on + strand, within MPMX19_03428 at 820.085 kb on + strand, within MPMX19_03428 at 820.086 kb on - strand, within MPMX19_03428 at 820.086 kb on - strand, within MPMX19_03428 at 820.090 kb on + strand, within MPMX19_03428 at 820.090 kb on + strand, within MPMX19_03428 at 820.090 kb on + strand, within MPMX19_03428 at 820.091 kb on - strand, within MPMX19_03428 at 820.371 kb on - strand, within MPMX19_03428 at 820.803 kb on - strand, within MPMX19_03428 at 820.803 kb on - strand, within MPMX19_03428 at 820.803 kb on - strand, within MPMX19_03428 at 820.803 kb on - strand, within MPMX19_03428 at 821.298 kb on + strand at 821.298 kb on + strand at 821.298 kb on + strand at 821.299 kb on - strand at 821.299 kb on - strand at 821.692 kb on + strand, within MPMX19_03429 at 821.692 kb on + strand, within MPMX19_03429 at 821.692 kb on + strand, within MPMX19_03429 at 821.692 kb on + strand, within MPMX19_03429 at 821.692 kb on + strand, within MPMX19_03429 at 821.692 kb on + strand, within MPMX19_03429 at 821.692 kb on + strand, within MPMX19_03429 at 821.693 kb on - strand, within MPMX19_03429 at 821.693 kb on - strand, within MPMX19_03429 at 821.693 kb on - strand, within MPMX19_03429 at 821.693 kb on - strand, within MPMX19_03429 at 821.693 kb on - strand, within MPMX19_03429 at 821.693 kb on - strand, within MPMX19_03429 at 821.842 kb on + strand, within MPMX19_03429 at 821.842 kb on + strand, within MPMX19_03429 at 821.842 kb on + strand, within MPMX19_03429 at 821.869 kb on + strand, within MPMX19_03429 at 821.869 kb on + strand, within MPMX19_03429 at 821.869 kb on + strand, within MPMX19_03429 at 821.869 kb on + strand, within MPMX19_03429 at 821.870 kb on - strand, within MPMX19_03429 at 821.870 kb on - strand, within MPMX19_03429 at 821.870 kb on - strand, within MPMX19_03429 at 821.870 kb on - strand, within MPMX19_03429
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 818,398 + -0.2 818,399 - -1.4 818,399 - -0.8 818,445 + -0.3 818,446 - -0.0 818,455 + -1.4 818,455 + -2.7 818,455 + -1.4 818,455 + -2.4 818,455 + -0.4 818,456 - -0.6 818,557 + -0.5 818,557 + -0.4 818,558 - -0.3 818,558 - -0.8 819,183 + MPMX19_03427 0.78 -1.0 819,183 + MPMX19_03427 0.78 -0.2 819,184 - MPMX19_03427 0.78 -0.4 819,184 - MPMX19_03427 0.78 -0.6 819,184 - MPMX19_03427 0.78 -1.5 819,184 - MPMX19_03427 0.78 +0.8 819,194 + MPMX19_03427 0.79 -0.8 819,194 + MPMX19_03427 0.79 -0.2 819,194 + MPMX19_03427 0.79 -2.8 819,194 + MPMX19_03427 0.79 +1.6 819,194 + MPMX19_03427 0.79 -0.1 819,195 - MPMX19_03427 0.79 -1.0 819,195 - MPMX19_03427 0.79 +0.1 819,195 - MPMX19_03427 0.79 -0.5 819,353 + -1.0 819,354 - -0.1 819,354 - -0.2 819,587 + MPMX19_03428 0.12 -2.4 819,587 + MPMX19_03428 0.12 +0.6 819,587 + MPMX19_03428 0.12 +0.5 819,587 + MPMX19_03428 0.12 +0.2 819,587 + MPMX19_03428 0.12 +0.4 819,756 - MPMX19_03428 0.21 -0.9 819,756 - MPMX19_03428 0.21 -2.2 819,901 + MPMX19_03428 0.28 -2.5 819,901 + MPMX19_03428 0.28 -0.4 819,901 + MPMX19_03428 0.28 -1.4 819,901 + MPMX19_03428 0.28 -1.3 819,901 + MPMX19_03428 0.28 +0.2 819,902 - MPMX19_03428 0.28 +0.6 819,902 - MPMX19_03428 0.28 -0.0 819,938 + MPMX19_03428 0.30 -0.6 819,977 + MPMX19_03428 0.32 +0.2 819,977 + MPMX19_03428 0.32 -0.8 819,978 - MPMX19_03428 0.32 +1.1 819,978 - MPMX19_03428 0.32 -1.7 819,978 - MPMX19_03428 0.32 +1.5 819,978 - MPMX19_03428 0.32 -0.0 819,978 - MPMX19_03428 0.32 -1.6 820,085 + MPMX19_03428 0.38 -1.5 820,085 + MPMX19_03428 0.38 -1.0 820,085 + MPMX19_03428 0.38 -0.8 820,086 - MPMX19_03428 0.38 -0.6 820,086 - MPMX19_03428 0.38 +0.2 820,090 + MPMX19_03428 0.38 -0.8 820,090 + MPMX19_03428 0.38 -0.2 820,090 + MPMX19_03428 0.38 -0.5 820,091 - MPMX19_03428 0.38 -0.8 820,371 - MPMX19_03428 0.52 +0.2 820,803 - MPMX19_03428 0.75 -1.4 820,803 - MPMX19_03428 0.75 -1.7 820,803 - MPMX19_03428 0.75 +1.0 820,803 - MPMX19_03428 0.75 -0.6 821,298 + +0.3 821,298 + +1.4 821,298 + -0.1 821,299 - -1.0 821,299 - -1.4 821,692 + MPMX19_03429 0.20 -0.3 821,692 + MPMX19_03429 0.20 -0.4 821,692 + MPMX19_03429 0.20 -0.0 821,692 + MPMX19_03429 0.20 +1.0 821,692 + MPMX19_03429 0.20 -1.0 821,692 + MPMX19_03429 0.20 -2.0 821,692 + MPMX19_03429 0.20 -0.8 821,693 - MPMX19_03429 0.20 +0.1 821,693 - MPMX19_03429 0.20 -0.8 821,693 - MPMX19_03429 0.20 +1.0 821,693 - MPMX19_03429 0.20 +1.3 821,693 - MPMX19_03429 0.20 -0.0 821,693 - MPMX19_03429 0.20 -0.4 821,842 + MPMX19_03429 0.27 -1.0 821,842 + MPMX19_03429 0.27 +0.5 821,842 + MPMX19_03429 0.27 -0.2 821,869 + MPMX19_03429 0.29 -0.2 821,869 + MPMX19_03429 0.29 +0.5 821,869 + MPMX19_03429 0.29 -0.7 821,869 + MPMX19_03429 0.29 -2.0 821,870 - MPMX19_03429 0.29 +2.0 821,870 - MPMX19_03429 0.29 -0.3 821,870 - MPMX19_03429 0.29 -0.2 821,870 - MPMX19_03429 0.29 -0.8
Or see this region's nucleotide sequence