Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03034

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03033 and MPMX19_03034 are separated by 123 nucleotidesMPMX19_03034 and MPMX19_03035 are separated by 46 nucleotidesMPMX19_03035 and MPMX19_03036 are separated by 88 nucleotides MPMX19_03033: MPMX19_03033 - hypothetical protein, at 301,044 to 302,054 _03033 MPMX19_03034: MPMX19_03034 - hypothetical protein, at 302,178 to 303,023 _03034 MPMX19_03035: MPMX19_03035 - Protein YceI, at 303,070 to 303,654 _03035 MPMX19_03036: MPMX19_03036 - Glutathionyl-hydroquinone reductase YqjG, at 303,743 to 304,744 _03036 Position (kb) 302 303 304Strain fitness (log2 ratio) -3 -2 -1 0 1at 301.534 kb on + strand, within MPMX19_03033at 301.534 kb on + strand, within MPMX19_03033at 301.535 kb on - strand, within MPMX19_03033at 301.549 kb on + strand, within MPMX19_03033at 301.549 kb on + strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.550 kb on - strand, within MPMX19_03033at 301.732 kb on + strand, within MPMX19_03033at 301.732 kb on + strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.733 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 301.880 kb on - strand, within MPMX19_03033at 302.045 kb on + strandat 302.049 kb on + strandat 302.050 kb on - strandat 302.050 kb on - strandat 302.070 kb on + strandat 302.070 kb on + strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.071 kb on - strandat 302.077 kb on - strandat 302.124 kb on - strandat 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.588 kb on + strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.589 kb on - strand, within MPMX19_03034at 302.879 kb on + strand, within MPMX19_03034at 303.033 kb on + strandat 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.154 kb on + strand, within MPMX19_03035at 303.155 kb on - strand, within MPMX19_03035at 303.155 kb on - strand, within MPMX19_03035at 303.155 kb on - strand, within MPMX19_03035at 303.589 kb on + strand, within MPMX19_03035at 303.589 kb on + strand, within MPMX19_03035at 303.589 kb on + strand, within MPMX19_03035at 303.590 kb on - strand, within MPMX19_03035at 303.590 kb on - strand, within MPMX19_03035at 303.590 kb on - strand, within MPMX19_03035at 303.683 kb on + strandat 303.683 kb on + strandat 303.683 kb on + strandat 303.684 kb on - strandat 303.684 kb on - strandat 303.684 kb on - strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.714 kb on + strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.715 kb on - strandat 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.917 kb on + strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.918 kb on - strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.926 kb on + strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036at 303.927 kb on - strand, within MPMX19_03036

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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301,534 + MPMX19_03033 0.48 -0.1
301,534 + MPMX19_03033 0.48 -1.0
301,535 - MPMX19_03033 0.49 -0.5
301,549 + MPMX19_03033 0.50 -0.2
301,549 + MPMX19_03033 0.50 -1.6
301,550 - MPMX19_03033 0.50 -1.3
301,550 - MPMX19_03033 0.50 -1.7
301,550 - MPMX19_03033 0.50 -1.4
301,550 - MPMX19_03033 0.50 -0.1
301,732 + MPMX19_03033 0.68 +0.1
301,732 + MPMX19_03033 0.68 +0.2
301,733 - MPMX19_03033 0.68 -0.5
301,733 - MPMX19_03033 0.68 -2.3
301,733 - MPMX19_03033 0.68 +0.8
301,733 - MPMX19_03033 0.68 +0.3
301,733 - MPMX19_03033 0.68 -0.6
301,733 - MPMX19_03033 0.68 -1.0
301,733 - MPMX19_03033 0.68 -1.7
301,733 - MPMX19_03033 0.68 -0.9
301,880 - MPMX19_03033 0.83 -0.6
301,880 - MPMX19_03033 0.83 -1.5
301,880 - MPMX19_03033 0.83 -1.1
301,880 - MPMX19_03033 0.83 -0.5
301,880 - MPMX19_03033 0.83 -2.1
302,045 + -0.6
302,049 + -0.4
302,050 - +0.5
302,050 - -0.3
302,070 + -1.2
302,070 + -0.7
302,071 - +0.2
302,071 - -0.3
302,071 - -0.9
302,071 - -1.1
302,071 - -0.3
302,071 - -0.6
302,077 - -0.7
302,124 - +0.1
302,588 + MPMX19_03034 0.48 -0.7
302,588 + MPMX19_03034 0.48 -0.7
302,588 + MPMX19_03034 0.48 -0.3
302,588 + MPMX19_03034 0.48 -0.3
302,588 + MPMX19_03034 0.48 -0.9
302,588 + MPMX19_03034 0.48 -0.7
302,588 + MPMX19_03034 0.48 +0.1
302,588 + MPMX19_03034 0.48 -0.7
302,588 + MPMX19_03034 0.48 -1.1
302,588 + MPMX19_03034 0.48 +0.5
302,588 + MPMX19_03034 0.48 -0.9
302,589 - MPMX19_03034 0.49 -1.6
302,589 - MPMX19_03034 0.49 -1.4
302,589 - MPMX19_03034 0.49 -1.5
302,589 - MPMX19_03034 0.49 -0.2
302,589 - MPMX19_03034 0.49 +1.1
302,589 - MPMX19_03034 0.49 -0.1
302,589 - MPMX19_03034 0.49 +0.4
302,589 - MPMX19_03034 0.49 -1.8
302,589 - MPMX19_03034 0.49 -0.3
302,589 - MPMX19_03034 0.49 -0.5
302,589 - MPMX19_03034 0.49 -0.3
302,589 - MPMX19_03034 0.49 -0.9
302,589 - MPMX19_03034 0.49 -1.7
302,589 - MPMX19_03034 0.49 +1.2
302,589 - MPMX19_03034 0.49 -1.7
302,589 - MPMX19_03034 0.49 -1.2
302,589 - MPMX19_03034 0.49 -1.8
302,589 - MPMX19_03034 0.49 -1.6
302,589 - MPMX19_03034 0.49 +0.7
302,589 - MPMX19_03034 0.49 +0.1
302,589 - MPMX19_03034 0.49 -0.2
302,589 - MPMX19_03034 0.49 -1.1
302,879 + MPMX19_03034 0.83 -0.0
303,033 + +0.3
303,154 + MPMX19_03035 0.14 -1.8
303,154 + MPMX19_03035 0.14 -1.4
303,154 + MPMX19_03035 0.14 +1.1
303,154 + MPMX19_03035 0.14 -0.3
303,154 + MPMX19_03035 0.14 -0.3
303,154 + MPMX19_03035 0.14 +0.4
303,155 - MPMX19_03035 0.15 +0.2
303,155 - MPMX19_03035 0.15 -1.5
303,155 - MPMX19_03035 0.15 -0.3
303,589 + MPMX19_03035 0.89 -0.3
303,589 + MPMX19_03035 0.89 -2.5
303,589 + MPMX19_03035 0.89 +0.7
303,590 - MPMX19_03035 0.89 +0.2
303,590 - MPMX19_03035 0.89 +0.1
303,590 - MPMX19_03035 0.89 -0.3
303,683 + -0.7
303,683 + -0.5
303,683 + -0.7
303,684 - -3.1
303,684 - +0.2
303,684 - -0.9
303,714 + -0.1
303,714 + -1.0
303,714 + -1.3
303,714 + -0.6
303,714 + -0.5
303,714 + -0.9
303,714 + -1.4
303,714 + +0.1
303,714 + -1.9
303,714 + -1.2
303,714 + -2.5
303,714 + +0.1
303,715 - -0.4
303,715 - -0.8
303,715 - +0.6
303,715 - -0.9
303,715 - -0.7
303,715 - -1.4
303,715 - +0.3
303,715 - -2.1
303,715 - -1.8
303,715 - -0.3
303,715 - -0.7
303,715 - -0.3
303,715 - -0.1
303,715 - -1.7
303,715 - -2.9
303,715 - +0.1
303,715 - -0.4
303,917 + MPMX19_03036 0.17 -0.1
303,917 + MPMX19_03036 0.17 -1.6
303,917 + MPMX19_03036 0.17 -0.7
303,917 + MPMX19_03036 0.17 -1.2
303,917 + MPMX19_03036 0.17 -1.2
303,917 + MPMX19_03036 0.17 -0.9
303,917 + MPMX19_03036 0.17 +0.5
303,917 + MPMX19_03036 0.17 -1.1
303,918 - MPMX19_03036 0.17 -0.5
303,918 - MPMX19_03036 0.17 -0.4
303,918 - MPMX19_03036 0.17 +0.5
303,918 - MPMX19_03036 0.17 +0.1
303,918 - MPMX19_03036 0.17 -0.2
303,918 - MPMX19_03036 0.17 +0.1
303,918 - MPMX19_03036 0.17 +0.3
303,918 - MPMX19_03036 0.17 +0.7
303,918 - MPMX19_03036 0.17 +0.1
303,918 - MPMX19_03036 0.17 +0.5
303,918 - MPMX19_03036 0.17 +0.1
303,918 - MPMX19_03036 0.17 -1.8
303,918 - MPMX19_03036 0.17 -0.7
303,918 - MPMX19_03036 0.17 -0.9
303,926 + MPMX19_03036 0.18 -1.7
303,926 + MPMX19_03036 0.18 -0.7
303,926 + MPMX19_03036 0.18 +0.2
303,926 + MPMX19_03036 0.18 +0.3
303,926 + MPMX19_03036 0.18 +1.3
303,926 + MPMX19_03036 0.18 +1.3
303,926 + MPMX19_03036 0.18 -1.5
303,926 + MPMX19_03036 0.18 -0.1
303,927 - MPMX19_03036 0.18 -1.4
303,927 - MPMX19_03036 0.18 -0.4
303,927 - MPMX19_03036 0.18 -0.4
303,927 - MPMX19_03036 0.18 -0.3
303,927 - MPMX19_03036 0.18 -0.3
303,927 - MPMX19_03036 0.18 +0.7
303,927 - MPMX19_03036 0.18 -0.8
303,927 - MPMX19_03036 0.18 -0.1
303,927 - MPMX19_03036 0.18 +0.1
303,927 - MPMX19_03036 0.18 +0.1
303,927 - MPMX19_03036 0.18 -1.3
303,927 - MPMX19_03036 0.18 -0.8

Or see this region's nucleotide sequence