Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02945

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02944 and MPMX19_02945 are separated by 46 nucleotidesMPMX19_02945 and MPMX19_02946 overlap by 4 nucleotidesMPMX19_02946 and MPMX19_02947 overlap by 11 nucleotides MPMX19_02944: MPMX19_02944 - Fructose-1,6-bisphosphatase class 1, at 202,596 to 203,708 _02944 MPMX19_02945: MPMX19_02945 - Protein CbbX, at 203,755 to 204,675 _02945 MPMX19_02946: MPMX19_02946 - Ribulose-phosphate 3-epimerase, at 204,672 to 205,394 _02946 MPMX19_02947: MPMX19_02947 - Ribulose bisphosphate carboxylase small chain, chromosomal, at 205,384 to 205,824 _02947 Position (kb) 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 202.849 kb on + strand, within MPMX19_02944at 202.850 kb on - strand, within MPMX19_02944at 202.850 kb on - strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.020 kb on + strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.021 kb on - strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.119 kb on + strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.120 kb on - strand, within MPMX19_02944at 203.197 kb on + strand, within MPMX19_02944at 203.197 kb on + strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.198 kb on - strand, within MPMX19_02944at 203.730 kb on + strandat 203.730 kb on + strandat 203.730 kb on + strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.756 kb on + strandat 203.756 kb on + strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 204.191 kb on + strand, within MPMX19_02945at 204.192 kb on - strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.222 kb on - strand, within MPMX19_02945at 204.222 kb on - strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.300 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.357 kb on - strand, within MPMX19_02945at 204.593 kb on + strandat 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.369 kb on + strandat 205.369 kb on + strandat 205.369 kb on + strandat 205.370 kb on - strandat 205.370 kb on - strandat 205.412 kb on + strandat 205.442 kb on + strand, within MPMX19_02947at 205.442 kb on + strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.457 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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202,849 + MPMX19_02944 0.23 +1.2
202,850 - MPMX19_02944 0.23 +0.6
202,850 - MPMX19_02944 0.23 -1.2
203,020 + MPMX19_02944 0.38 +0.6
203,020 + MPMX19_02944 0.38 -0.7
203,020 + MPMX19_02944 0.38 -0.2
203,020 + MPMX19_02944 0.38 -1.0
203,020 + MPMX19_02944 0.38 +0.1
203,020 + MPMX19_02944 0.38 -2.6
203,020 + MPMX19_02944 0.38 -0.3
203,020 + MPMX19_02944 0.38 -0.0
203,020 + MPMX19_02944 0.38 -1.3
203,020 + MPMX19_02944 0.38 -0.7
203,020 + MPMX19_02944 0.38 -0.9
203,020 + MPMX19_02944 0.38 -0.2
203,020 + MPMX19_02944 0.38 +1.1
203,020 + MPMX19_02944 0.38 -0.8
203,020 + MPMX19_02944 0.38 -0.5
203,020 + MPMX19_02944 0.38 +0.6
203,020 + MPMX19_02944 0.38 -0.8
203,020 + MPMX19_02944 0.38 -0.6
203,020 + MPMX19_02944 0.38 -2.2
203,020 + MPMX19_02944 0.38 +1.3
203,020 + MPMX19_02944 0.38 -0.6
203,020 + MPMX19_02944 0.38 +0.1
203,020 + MPMX19_02944 0.38 -0.2
203,021 - MPMX19_02944 0.38 +0.1
203,021 - MPMX19_02944 0.38 -1.3
203,021 - MPMX19_02944 0.38 -0.9
203,021 - MPMX19_02944 0.38 -1.2
203,021 - MPMX19_02944 0.38 -0.9
203,021 - MPMX19_02944 0.38 +0.9
203,021 - MPMX19_02944 0.38 -1.2
203,021 - MPMX19_02944 0.38 -0.8
203,021 - MPMX19_02944 0.38 -2.8
203,021 - MPMX19_02944 0.38 -0.1
203,021 - MPMX19_02944 0.38 -0.6
203,021 - MPMX19_02944 0.38 -2.4
203,021 - MPMX19_02944 0.38 -1.4
203,021 - MPMX19_02944 0.38 -1.1
203,021 - MPMX19_02944 0.38 -1.7
203,021 - MPMX19_02944 0.38 +0.7
203,021 - MPMX19_02944 0.38 -2.3
203,021 - MPMX19_02944 0.38 +1.1
203,119 + MPMX19_02944 0.47 -0.5
203,119 + MPMX19_02944 0.47 +0.4
203,119 + MPMX19_02944 0.47 -0.4
203,120 - MPMX19_02944 0.47 +0.7
203,120 - MPMX19_02944 0.47 +0.6
203,120 - MPMX19_02944 0.47 -0.6
203,197 + MPMX19_02944 0.54 -0.4
203,197 + MPMX19_02944 0.54 -0.3
203,198 - MPMX19_02944 0.54 -1.5
203,198 - MPMX19_02944 0.54 +1.2
203,198 - MPMX19_02944 0.54 -0.5
203,730 + +0.9
203,730 + +0.1
203,730 + +0.9
203,731 - +0.2
203,731 - -0.8
203,731 - -0.0
203,731 - -0.9
203,731 - -0.0
203,731 - -0.9
203,731 - +0.7
203,731 - -0.4
203,756 + -0.0
203,756 + +1.2
203,757 - +0.2
203,757 - +0.4
203,757 - -0.5
203,757 - -2.2
203,939 + MPMX19_02945 0.20 -1.6
203,939 + MPMX19_02945 0.20 +1.2
203,939 + MPMX19_02945 0.20 -1.8
203,939 + MPMX19_02945 0.20 -0.8
203,939 + MPMX19_02945 0.20 -0.4
203,939 + MPMX19_02945 0.20 -1.0
203,939 + MPMX19_02945 0.20 -0.3
203,939 + MPMX19_02945 0.20 -1.8
203,939 + MPMX19_02945 0.20 -1.5
203,939 + MPMX19_02945 0.20 -1.0
203,939 + MPMX19_02945 0.20 -2.1
203,940 - MPMX19_02945 0.20 +0.1
203,940 - MPMX19_02945 0.20 +0.5
203,940 - MPMX19_02945 0.20 +0.1
203,940 - MPMX19_02945 0.20 -0.5
203,940 - MPMX19_02945 0.20 -0.8
203,940 - MPMX19_02945 0.20 +0.1
203,940 - MPMX19_02945 0.20 -0.7
203,940 - MPMX19_02945 0.20 +0.5
203,940 - MPMX19_02945 0.20 -0.6
204,191 + MPMX19_02945 0.47 -1.1
204,192 - MPMX19_02945 0.47 -0.3
204,221 + MPMX19_02945 0.51 +0.1
204,221 + MPMX19_02945 0.51 -1.1
204,221 + MPMX19_02945 0.51 +0.2
204,221 + MPMX19_02945 0.51 -0.9
204,222 - MPMX19_02945 0.51 -0.8
204,222 - MPMX19_02945 0.51 -2.1
204,224 + MPMX19_02945 0.51 +0.2
204,224 + MPMX19_02945 0.51 -0.6
204,224 + MPMX19_02945 0.51 -0.5
204,224 + MPMX19_02945 0.51 +0.3
204,224 + MPMX19_02945 0.51 -0.4
204,224 + MPMX19_02945 0.51 -1.4
204,224 + MPMX19_02945 0.51 -0.0
204,225 - MPMX19_02945 0.51 -0.7
204,225 - MPMX19_02945 0.51 -2.3
204,225 - MPMX19_02945 0.51 -0.1
204,225 - MPMX19_02945 0.51 -0.6
204,225 - MPMX19_02945 0.51 -0.1
204,225 - MPMX19_02945 0.51 +0.2
204,225 - MPMX19_02945 0.51 -2.1
204,225 - MPMX19_02945 0.51 -0.9
204,225 - MPMX19_02945 0.51 -1.1
204,225 - MPMX19_02945 0.51 -0.3
204,225 - MPMX19_02945 0.51 +0.1
204,300 + MPMX19_02945 0.59 -0.3
204,302 + MPMX19_02945 0.59 +0.6
204,302 + MPMX19_02945 0.59 -1.2
204,302 + MPMX19_02945 0.59 -1.7
204,302 + MPMX19_02945 0.59 -0.6
204,302 + MPMX19_02945 0.59 -1.5
204,303 - MPMX19_02945 0.60 -1.6
204,303 - MPMX19_02945 0.60 +0.5
204,303 - MPMX19_02945 0.60 -0.1
204,303 - MPMX19_02945 0.60 -1.2
204,303 - MPMX19_02945 0.60 -2.0
204,303 - MPMX19_02945 0.60 -0.4
204,303 - MPMX19_02945 0.60 +1.3
204,303 - MPMX19_02945 0.60 -0.3
204,303 - MPMX19_02945 0.60 -1.2
204,356 + MPMX19_02945 0.65 +0.1
204,356 + MPMX19_02945 0.65 -1.4
204,356 + MPMX19_02945 0.65 -0.6
204,356 + MPMX19_02945 0.65 +0.6
204,357 - MPMX19_02945 0.65 +0.1
204,593 + -1.1
205,255 + MPMX19_02946 0.81 +0.0
205,255 + MPMX19_02946 0.81 -0.7
205,255 + MPMX19_02946 0.81 +0.2
205,255 + MPMX19_02946 0.81 -0.8
205,255 + MPMX19_02946 0.81 +0.0
205,255 + MPMX19_02946 0.81 -0.3
205,255 + MPMX19_02946 0.81 +0.3
205,255 + MPMX19_02946 0.81 -0.5
205,255 + MPMX19_02946 0.81 +0.1
205,255 + MPMX19_02946 0.81 +0.0
205,255 + MPMX19_02946 0.81 -0.2
205,256 - MPMX19_02946 0.81 +0.8
205,256 - MPMX19_02946 0.81 +0.0
205,256 - MPMX19_02946 0.81 -0.7
205,256 - MPMX19_02946 0.81 -1.0
205,256 - MPMX19_02946 0.81 -0.7
205,256 - MPMX19_02946 0.81 +1.2
205,256 - MPMX19_02946 0.81 -0.3
205,256 - MPMX19_02946 0.81 -1.0
205,256 - MPMX19_02946 0.81 +0.5
205,256 - MPMX19_02946 0.81 +1.0
205,256 - MPMX19_02946 0.81 +0.2
205,256 - MPMX19_02946 0.81 -1.9
205,256 - MPMX19_02946 0.81 -1.1
205,256 - MPMX19_02946 0.81 -1.5
205,256 - MPMX19_02946 0.81 +0.5
205,256 - MPMX19_02946 0.81 +0.0
205,256 - MPMX19_02946 0.81 +2.0
205,256 - MPMX19_02946 0.81 -0.6
205,256 - MPMX19_02946 0.81 +0.0
205,369 + -0.8
205,369 + +0.5
205,369 + -2.3
205,370 - +0.5
205,370 - -0.3
205,412 + -0.8
205,442 + MPMX19_02947 0.13 +0.3
205,442 + MPMX19_02947 0.13 -1.0
205,443 - MPMX19_02947 0.13 -1.0
205,443 - MPMX19_02947 0.13 -0.7
205,443 - MPMX19_02947 0.13 +0.1
205,443 - MPMX19_02947 0.13 +1.2
205,443 - MPMX19_02947 0.13 +0.0
205,457 + MPMX19_02947 0.17 -0.8
205,589 + MPMX19_02947 0.46 +0.0
205,589 + MPMX19_02947 0.46 -2.3
205,589 + MPMX19_02947 0.46 -0.8
205,589 + MPMX19_02947 0.46 -0.9
205,589 + MPMX19_02947 0.46 -0.0
205,589 + MPMX19_02947 0.46 -0.6
205,589 + MPMX19_02947 0.46 +1.5
205,589 + MPMX19_02947 0.46 -0.7
205,590 - MPMX19_02947 0.47 -1.8
205,590 - MPMX19_02947 0.47 -0.8
205,590 - MPMX19_02947 0.47 +1.0
205,590 - MPMX19_02947 0.47 -0.3

Or see this region's nucleotide sequence