Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00130 and MPMX19_00131 are separated by 112 nucleotides MPMX19_00131 and MPMX19_00132 are separated by 104 nucleotides MPMX19_00132 and MPMX19_00133 are separated by 2 nucleotides
MPMX19_00130: MPMX19_00130 - hypothetical protein, at 141,072 to 142,259
_00130
MPMX19_00131: MPMX19_00131 - hypothetical protein, at 142,372 to 142,623
_00131
MPMX19_00132: MPMX19_00132 - hypothetical protein, at 142,728 to 143,348
_00132
MPMX19_00133: MPMX19_00133 - hypothetical protein, at 143,351 to 144,025
_00133
Position (kb) 142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.646 kb on + strand, within MPMX19_00130 at 141.646 kb on + strand, within MPMX19_00130 at 141.646 kb on + strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.761 kb on - strand, within MPMX19_00130 at 141.761 kb on - strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.773 kb on + strand, within MPMX19_00130 at 141.773 kb on + strand, within MPMX19_00130 at 141.774 kb on - strand, within MPMX19_00130 at 141.774 kb on - strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 142.029 kb on + strand, within MPMX19_00130 at 142.471 kb on + strand, within MPMX19_00131 at 142.471 kb on + strand, within MPMX19_00131 at 142.472 kb on - strand, within MPMX19_00131 at 142.513 kb on + strand, within MPMX19_00131 at 142.514 kb on - strand, within MPMX19_00131 at 142.829 kb on + strand, within MPMX19_00132 at 142.829 kb on + strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.930 kb on + strand, within MPMX19_00132 at 142.931 kb on - strand, within MPMX19_00132 at 142.931 kb on - strand, within MPMX19_00132 at 143.100 kb on + strand, within MPMX19_00132 at 143.100 kb on + strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.322 kb on + strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.323 kb on - strand at 143.534 kb on + strand, within MPMX19_00133 at 143.534 kb on + strand, within MPMX19_00133 at 143.534 kb on + strand, within MPMX19_00133 at 143.535 kb on - strand, within MPMX19_00133 at 143.535 kb on - strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.559 kb on + strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.560 kb on - strand, within MPMX19_00133 at 143.569 kb on + strand, within MPMX19_00133 at 143.569 kb on + strand, within MPMX19_00133 at 143.569 kb on + strand, within MPMX19_00133 at 143.570 kb on - strand, within MPMX19_00133 at 143.570 kb on - strand, within MPMX19_00133
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 141,441 + MPMX19_00130 0.31 -1.2 141,441 + MPMX19_00130 0.31 -1.9 141,441 + MPMX19_00130 0.31 -2.2 141,441 + MPMX19_00130 0.31 -0.0 141,441 + MPMX19_00130 0.31 +1.2 141,441 + MPMX19_00130 0.31 -0.4 141,442 - MPMX19_00130 0.31 -1.0 141,442 - MPMX19_00130 0.31 -0.4 141,442 - MPMX19_00130 0.31 -0.0 141,442 - MPMX19_00130 0.31 -0.6 141,442 - MPMX19_00130 0.31 +0.1 141,442 - MPMX19_00130 0.31 +0.8 141,442 - MPMX19_00130 0.31 -1.6 141,442 - MPMX19_00130 0.31 +0.2 141,486 + MPMX19_00130 0.35 -0.5 141,486 + MPMX19_00130 0.35 -0.2 141,486 + MPMX19_00130 0.35 -2.1 141,486 + MPMX19_00130 0.35 -0.0 141,486 + MPMX19_00130 0.35 -1.2 141,486 + MPMX19_00130 0.35 +0.2 141,486 + MPMX19_00130 0.35 -2.7 141,486 + MPMX19_00130 0.35 -0.2 141,486 + MPMX19_00130 0.35 -0.2 141,486 + MPMX19_00130 0.35 -0.6 141,487 - MPMX19_00130 0.35 +0.4 141,487 - MPMX19_00130 0.35 -1.5 141,487 - MPMX19_00130 0.35 +0.8 141,487 - MPMX19_00130 0.35 +0.2 141,487 - MPMX19_00130 0.35 +0.1 141,487 - MPMX19_00130 0.35 -0.6 141,487 - MPMX19_00130 0.35 -0.5 141,487 - MPMX19_00130 0.35 +1.4 141,487 - MPMX19_00130 0.35 -2.5 141,487 - MPMX19_00130 0.35 -0.4 141,487 - MPMX19_00130 0.35 +0.1 141,487 - MPMX19_00130 0.35 -0.3 141,487 - MPMX19_00130 0.35 +0.4 141,487 - MPMX19_00130 0.35 -1.7 141,487 - MPMX19_00130 0.35 -1.8 141,644 + MPMX19_00130 0.48 -2.1 141,644 + MPMX19_00130 0.48 -0.4 141,644 + MPMX19_00130 0.48 +0.6 141,644 + MPMX19_00130 0.48 -0.2 141,644 + MPMX19_00130 0.48 -1.5 141,644 + MPMX19_00130 0.48 -0.1 141,644 + MPMX19_00130 0.48 -0.4 141,644 + MPMX19_00130 0.48 -1.8 141,644 + MPMX19_00130 0.48 -0.4 141,645 - MPMX19_00130 0.48 -2.2 141,645 - MPMX19_00130 0.48 -0.9 141,645 - MPMX19_00130 0.48 +0.4 141,645 - MPMX19_00130 0.48 -0.8 141,645 - MPMX19_00130 0.48 +0.1 141,645 - MPMX19_00130 0.48 -0.8 141,645 - MPMX19_00130 0.48 -1.0 141,646 + MPMX19_00130 0.48 -0.7 141,646 + MPMX19_00130 0.48 -0.3 141,646 + MPMX19_00130 0.48 -1.7 141,647 - MPMX19_00130 0.48 -1.5 141,647 - MPMX19_00130 0.48 +1.2 141,647 - MPMX19_00130 0.48 +0.3 141,647 - MPMX19_00130 0.48 +0.7 141,760 + MPMX19_00130 0.58 -1.4 141,760 + MPMX19_00130 0.58 -0.9 141,760 + MPMX19_00130 0.58 -2.2 141,760 + MPMX19_00130 0.58 -0.3 141,761 - MPMX19_00130 0.58 -0.2 141,761 - MPMX19_00130 0.58 -0.6 141,766 + MPMX19_00130 0.58 -1.4 141,766 + MPMX19_00130 0.58 -0.0 141,766 + MPMX19_00130 0.58 -0.2 141,766 + MPMX19_00130 0.58 +1.3 141,766 + MPMX19_00130 0.58 -0.6 141,766 + MPMX19_00130 0.58 -0.8 141,766 + MPMX19_00130 0.58 -0.8 141,766 + MPMX19_00130 0.58 +0.1 141,766 + MPMX19_00130 0.58 -1.0 141,766 + MPMX19_00130 0.58 -1.7 141,766 + MPMX19_00130 0.58 -2.5 141,766 + MPMX19_00130 0.58 -0.5 141,766 + MPMX19_00130 0.58 +0.1 141,766 + MPMX19_00130 0.58 -1.6 141,766 + MPMX19_00130 0.58 -1.2 141,766 + MPMX19_00130 0.58 -1.1 141,766 + MPMX19_00130 0.58 +0.6 141,766 + MPMX19_00130 0.58 -1.1 141,766 + MPMX19_00130 0.58 -0.8 141,766 + MPMX19_00130 0.58 -1.9 141,767 - MPMX19_00130 0.59 +0.4 141,767 - MPMX19_00130 0.59 +1.1 141,767 - MPMX19_00130 0.59 -0.4 141,767 - MPMX19_00130 0.59 +1.2 141,767 - MPMX19_00130 0.59 -0.6 141,767 - MPMX19_00130 0.59 -2.1 141,767 - MPMX19_00130 0.59 -2.2 141,767 - MPMX19_00130 0.59 -0.8 141,767 - MPMX19_00130 0.59 -0.4 141,767 - MPMX19_00130 0.59 -0.4 141,770 + MPMX19_00130 0.59 -0.5 141,770 + MPMX19_00130 0.59 -3.3 141,770 + MPMX19_00130 0.59 -1.4 141,771 - MPMX19_00130 0.59 -1.3 141,771 - MPMX19_00130 0.59 +0.6 141,771 - MPMX19_00130 0.59 -1.4 141,771 - MPMX19_00130 0.59 -1.8 141,773 + MPMX19_00130 0.59 -0.6 141,773 + MPMX19_00130 0.59 +1.0 141,774 - MPMX19_00130 0.59 +0.2 141,774 - MPMX19_00130 0.59 -2.0 141,779 + MPMX19_00130 0.60 -1.1 141,779 + MPMX19_00130 0.60 -1.9 141,779 + MPMX19_00130 0.60 -0.2 141,779 + MPMX19_00130 0.60 +0.1 141,779 + MPMX19_00130 0.60 -1.7 141,779 + MPMX19_00130 0.60 -2.0 141,780 - MPMX19_00130 0.60 -1.2 141,780 - MPMX19_00130 0.60 +1.2 141,780 - MPMX19_00130 0.60 +0.9 141,780 - MPMX19_00130 0.60 -0.8 141,780 - MPMX19_00130 0.60 +0.3 141,780 - MPMX19_00130 0.60 -0.4 141,780 - MPMX19_00130 0.60 +0.8 142,029 + MPMX19_00130 0.81 +0.6 142,471 + MPMX19_00131 0.39 -1.1 142,471 + MPMX19_00131 0.39 -1.9 142,472 - MPMX19_00131 0.40 -1.2 142,513 + MPMX19_00131 0.56 +0.5 142,514 - MPMX19_00131 0.56 -0.6 142,829 + MPMX19_00132 0.16 -1.2 142,829 + MPMX19_00132 0.16 +0.2 142,830 - MPMX19_00132 0.16 -3.1 142,830 - MPMX19_00132 0.16 -1.3 142,830 - MPMX19_00132 0.16 -1.0 142,830 - MPMX19_00132 0.16 -0.2 142,930 + MPMX19_00132 0.33 -0.0 142,931 - MPMX19_00132 0.33 -1.0 142,931 - MPMX19_00132 0.33 +0.5 143,100 + MPMX19_00132 0.60 -0.0 143,100 + MPMX19_00132 0.60 -2.0 143,101 - MPMX19_00132 0.60 -1.2 143,101 - MPMX19_00132 0.60 -0.8 143,101 - MPMX19_00132 0.60 -0.6 143,322 + -0.6 143,322 + -0.4 143,322 + -0.9 143,322 + -0.2 143,322 + -1.0 143,322 + -1.6 143,322 + -1.6 143,322 + +0.2 143,322 + -0.6 143,322 + -0.8 143,322 + +0.6 143,322 + -2.5 143,322 + +0.2 143,322 + -0.6 143,323 - -0.9 143,323 - -1.5 143,323 - -0.8 143,323 - -1.3 143,323 - +0.3 143,323 - -1.1 143,323 - -0.2 143,323 - -0.8 143,323 - -0.7 143,323 - -1.6 143,534 + MPMX19_00133 0.27 -0.6 143,534 + MPMX19_00133 0.27 -1.2 143,534 + MPMX19_00133 0.27 -1.9 143,535 - MPMX19_00133 0.27 -1.7 143,535 - MPMX19_00133 0.27 +1.4 143,559 + MPMX19_00133 0.31 +0.2 143,559 + MPMX19_00133 0.31 -0.8 143,559 + MPMX19_00133 0.31 +1.2 143,559 + MPMX19_00133 0.31 -0.0 143,560 - MPMX19_00133 0.31 +0.2 143,560 - MPMX19_00133 0.31 -0.7 143,560 - MPMX19_00133 0.31 -1.6 143,560 - MPMX19_00133 0.31 +0.3 143,560 - MPMX19_00133 0.31 -1.3 143,560 - MPMX19_00133 0.31 -1.2 143,560 - MPMX19_00133 0.31 -0.7 143,560 - MPMX19_00133 0.31 +0.2 143,560 - MPMX19_00133 0.31 +1.0 143,560 - MPMX19_00133 0.31 -0.4 143,560 - MPMX19_00133 0.31 -1.7 143,560 - MPMX19_00133 0.31 -0.3 143,560 - MPMX19_00133 0.31 -1.0 143,569 + MPMX19_00133 0.32 -0.4 143,569 + MPMX19_00133 0.32 -0.3 143,569 + MPMX19_00133 0.32 -1.0 143,570 - MPMX19_00133 0.32 -0.5 143,570 - MPMX19_00133 0.32 -0.9
Or see this region's nucleotide sequence