Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF786 and GFF787 are separated by 95 nucleotides GFF787 and GFF788 are separated by 55 nucleotides GFF788 and GFF789 are separated by 66 nucleotides
GFF786 - 3-isopropylmalate dehydratase small subunit 1, at 143,506 to 144,150
GFF786
GFF787 - putative methyltransferase YcgJ, at 144,246 to 145,013
GFF787
GFF788 - 3-isopropylmalate dehydrogenase, at 145,069 to 146,151
GFF788
GFF789 - Aspartate-semialdehyde dehydrogenase, at 146,218 to 147,330
GFF789
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 144.164 kb on + strand at 144.164 kb on + strand at 144.164 kb on + strand at 144.165 kb on - strand at 144.165 kb on - strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.231 kb on + strand at 144.310 kb on - strand at 144.310 kb on - strand at 144.310 kb on - strand at 144.355 kb on + strand, within GFF787 at 144.355 kb on + strand, within GFF787 at 144.356 kb on - strand, within GFF787 at 144.356 kb on - strand, within GFF787 at 144.356 kb on - strand, within GFF787 at 144.463 kb on - strand, within GFF787 at 144.533 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.724 kb on - strand, within GFF787 at 144.724 kb on - strand, within GFF787 at 144.724 kb on - strand, within GFF787 at 144.772 kb on - strand, within GFF787 at 144.948 kb on + strand at 144.959 kb on - strand at 144.994 kb on + strand at 144.994 kb on + strand at 144.994 kb on + strand at 144.995 kb on - strand at 144.995 kb on - strand at 144.995 kb on - strand at 144.995 kb on - strand at 145.104 kb on + strand at 145.162 kb on + strand at 145.162 kb on + strand at 145.162 kb on + strand at 145.162 kb on + strand at 145.163 kb on - strand at 145.163 kb on - strand at 145.489 kb on + strand, within GFF788 at 145.489 kb on + strand, within GFF788 at 145.515 kb on + strand, within GFF788 at 145.516 kb on - strand, within GFF788 at 145.543 kb on + strand, within GFF788 at 145.559 kb on - strand, within GFF788 at 145.732 kb on + strand, within GFF788 at 145.732 kb on + strand, within GFF788 at 145.732 kb on + strand, within GFF788 at 145.732 kb on + strand, within GFF788 at 145.732 kb on + strand, within GFF788 at 145.732 kb on + strand, within GFF788 at 145.733 kb on - strand, within GFF788 at 145.733 kb on - strand, within GFF788 at 145.733 kb on - strand, within GFF788 at 145.733 kb on - strand, within GFF788 at 145.733 kb on - strand, within GFF788 at 145.733 kb on - strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.897 kb on + strand, within GFF788 at 145.898 kb on - strand, within GFF788 at 145.898 kb on - strand, within GFF788 at 145.898 kb on - strand, within GFF788 at 145.898 kb on - strand, within GFF788 at 145.898 kb on - strand, within GFF788 at 146.092 kb on - strand at 146.103 kb on + strand at 146.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 144,164 + -1.4 144,164 + +0.7 144,164 + +0.8 144,165 - +1.0 144,165 - -0.9 144,212 + +0.3 144,212 + +0.6 144,212 + +0.1 144,231 + +0.7 144,310 - -0.5 144,310 - -2.0 144,310 - -0.6 144,355 + GFF787 0.14 -0.6 144,355 + GFF787 0.14 +0.9 144,356 - GFF787 0.14 -0.4 144,356 - GFF787 0.14 -0.4 144,356 - GFF787 0.14 -0.7 144,463 - GFF787 0.28 -1.1 144,533 + GFF787 0.37 -0.4 144,723 + GFF787 0.62 +1.0 144,723 + GFF787 0.62 -0.0 144,723 + GFF787 0.62 +0.2 144,723 + GFF787 0.62 +0.1 144,724 - GFF787 0.62 -1.4 144,724 - GFF787 0.62 -2.1 144,724 - GFF787 0.62 -2.3 144,772 - GFF787 0.68 -0.7 144,948 + +1.2 144,959 - -1.4 144,994 + +1.0 144,994 + +0.4 144,994 + -0.2 144,995 - -1.0 144,995 - +1.0 144,995 - -0.1 144,995 - -0.3 145,104 + -3.2 145,162 + -2.9 145,162 + -2.5 145,162 + -1.9 145,162 + -2.7 145,163 - -0.9 145,163 - -1.7 145,489 + GFF788 0.39 -3.2 145,489 + GFF788 0.39 -2.0 145,515 + GFF788 0.41 -3.0 145,516 - GFF788 0.41 -3.2 145,543 + GFF788 0.44 -2.4 145,559 - GFF788 0.45 -2.7 145,732 + GFF788 0.61 -2.1 145,732 + GFF788 0.61 -1.1 145,732 + GFF788 0.61 -2.1 145,732 + GFF788 0.61 -1.0 145,732 + GFF788 0.61 -2.3 145,732 + GFF788 0.61 -1.3 145,733 - GFF788 0.61 -2.7 145,733 - GFF788 0.61 -0.7 145,733 - GFF788 0.61 -1.6 145,733 - GFF788 0.61 -3.4 145,733 - GFF788 0.61 -2.1 145,733 - GFF788 0.61 -4.1 145,897 + GFF788 0.76 -3.0 145,897 + GFF788 0.76 -0.4 145,897 + GFF788 0.76 -1.1 145,897 + GFF788 0.76 -4.0 145,897 + GFF788 0.76 -1.4 145,897 + GFF788 0.76 -2.7 145,897 + GFF788 0.76 -2.3 145,898 - GFF788 0.77 -0.0 145,898 - GFF788 0.77 -2.4 145,898 - GFF788 0.77 -1.9 145,898 - GFF788 0.77 -1.9 145,898 - GFF788 0.77 -3.7 146,092 - -1.1 146,103 + -2.9 146,178 + -0.6
Or see this region's nucleotide sequence