Strain Fitness in Pseudomonas sp. DMC3 around GFF336

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF335 and GFF336 are separated by 171 nucleotidesGFF336 and GFF337 are separated by 18 nucleotides GFF335 - Exopolyphosphatase, at 371,494 to 372,996 GFF335 GFF336 - Polyphosphate kinase, at 373,168 to 375,393 GFF336 GFF337 - Delta-aminolevulinic acid dehydratase, at 375,412 to 376,425 GFF337 Position (kb) 373 374 375 376Strain fitness (log2 ratio) -2 -1 0 1at 372.400 kb on + strand, within GFF335at 372.400 kb on + strand, within GFF335at 372.401 kb on - strand, within GFF335at 372.626 kb on - strand, within GFF335at 372.631 kb on + strand, within GFF335at 372.735 kb on + strand, within GFF335at 373.002 kb on - strandat 373.058 kb on + strandat 373.058 kb on + strandat 373.058 kb on + strandat 373.058 kb on + strandat 373.086 kb on - strandat 373.086 kb on - strandat 373.086 kb on - strandat 373.265 kb on + strandat 373.266 kb on - strandat 373.314 kb on - strandat 373.314 kb on - strandat 373.454 kb on + strand, within GFF336at 373.454 kb on + strand, within GFF336at 373.455 kb on - strand, within GFF336at 373.595 kb on + strand, within GFF336at 373.595 kb on + strand, within GFF336at 373.595 kb on + strand, within GFF336at 373.596 kb on - strand, within GFF336at 373.832 kb on + strand, within GFF336at 373.832 kb on + strand, within GFF336at 373.832 kb on + strand, within GFF336at 373.841 kb on + strand, within GFF336at 373.841 kb on + strand, within GFF336at 373.865 kb on + strand, within GFF336at 373.866 kb on - strand, within GFF336at 373.866 kb on - strand, within GFF336at 373.866 kb on - strand, within GFF336at 373.890 kb on - strand, within GFF336at 373.964 kb on + strand, within GFF336at 373.964 kb on + strand, within GFF336at 373.965 kb on - strand, within GFF336at 373.965 kb on - strand, within GFF336at 374.137 kb on + strand, within GFF336at 374.138 kb on - strand, within GFF336at 374.300 kb on + strand, within GFF336at 374.301 kb on - strand, within GFF336at 374.301 kb on - strand, within GFF336at 374.375 kb on + strand, within GFF336at 374.375 kb on + strand, within GFF336at 374.376 kb on - strand, within GFF336at 374.376 kb on - strand, within GFF336at 374.414 kb on + strand, within GFF336at 374.415 kb on - strand, within GFF336at 374.570 kb on + strand, within GFF336at 374.582 kb on - strand, within GFF336at 374.582 kb on - strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.642 kb on + strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 374.643 kb on - strand, within GFF336at 375.155 kb on + strand, within GFF336at 375.155 kb on + strand, within GFF336at 375.224 kb on + strandat 375.224 kb on + strandat 375.224 kb on + strandat 375.224 kb on + strandat 375.224 kb on + strandat 375.225 kb on - strandat 375.225 kb on - strandat 375.362 kb on - strandat 375.413 kb on + strandat 375.413 kb on + strandat 375.428 kb on - strandat 375.455 kb on + strandat 375.455 kb on + strandat 375.455 kb on + strandat 375.486 kb on + strandat 375.486 kb on + strandat 375.560 kb on + strand, within GFF337at 375.633 kb on - strand, within GFF337at 375.732 kb on - strand, within GFF337at 375.795 kb on - strand, within GFF337at 375.798 kb on - strand, within GFF337at 375.809 kb on + strand, within GFF337at 375.809 kb on + strand, within GFF337at 375.809 kb on + strand, within GFF337at 375.810 kb on - strand, within GFF337at 375.810 kb on - strand, within GFF337at 375.810 kb on - strand, within GFF337at 375.810 kb on - strand, within GFF337at 376.331 kb on - strandat 376.331 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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372,400 + GFF335 0.60 +0.8
372,400 + GFF335 0.60 -1.0
372,401 - GFF335 0.60 -1.5
372,626 - GFF335 0.75 -1.5
372,631 + GFF335 0.76 -0.0
372,735 + GFF335 0.83 -0.2
373,002 - +1.4
373,058 + -0.3
373,058 + -0.7
373,058 + +0.0
373,058 + +0.4
373,086 - +1.4
373,086 - +1.4
373,086 - -1.0
373,265 + -0.7
373,266 - -1.0
373,314 - -0.2
373,314 - -1.9
373,454 + GFF336 0.13 -0.5
373,454 + GFF336 0.13 -0.4
373,455 - GFF336 0.13 -1.3
373,595 + GFF336 0.19 -0.5
373,595 + GFF336 0.19 -1.8
373,595 + GFF336 0.19 -1.8
373,596 - GFF336 0.19 -1.6
373,832 + GFF336 0.30 -0.2
373,832 + GFF336 0.30 -0.6
373,832 + GFF336 0.30 -1.2
373,841 + GFF336 0.30 +0.2
373,841 + GFF336 0.30 -0.9
373,865 + GFF336 0.31 -0.4
373,866 - GFF336 0.31 -1.0
373,866 - GFF336 0.31 -1.8
373,866 - GFF336 0.31 -2.5
373,890 - GFF336 0.32 -1.2
373,964 + GFF336 0.36 -0.9
373,964 + GFF336 0.36 -0.5
373,965 - GFF336 0.36 -0.2
373,965 - GFF336 0.36 -1.1
374,137 + GFF336 0.44 -1.0
374,138 - GFF336 0.44 -0.6
374,300 + GFF336 0.51 -1.6
374,301 - GFF336 0.51 -0.6
374,301 - GFF336 0.51 -1.6
374,375 + GFF336 0.54 -1.3
374,375 + GFF336 0.54 -0.9
374,376 - GFF336 0.54 -0.7
374,376 - GFF336 0.54 -1.9
374,414 + GFF336 0.56 -1.0
374,415 - GFF336 0.56 -1.2
374,570 + GFF336 0.63 -1.7
374,582 - GFF336 0.64 +0.4
374,582 - GFF336 0.64 -0.0
374,642 + GFF336 0.66 -0.8
374,642 + GFF336 0.66 -1.0
374,642 + GFF336 0.66 -0.5
374,642 + GFF336 0.66 -1.6
374,642 + GFF336 0.66 -0.5
374,642 + GFF336 0.66 -1.1
374,642 + GFF336 0.66 -2.1
374,642 + GFF336 0.66 +0.4
374,643 - GFF336 0.66 -0.7
374,643 - GFF336 0.66 -0.5
374,643 - GFF336 0.66 -0.6
374,643 - GFF336 0.66 -0.2
374,643 - GFF336 0.66 -0.8
374,643 - GFF336 0.66 -1.9
374,643 - GFF336 0.66 -0.3
374,643 - GFF336 0.66 -0.6
374,643 - GFF336 0.66 -0.2
374,643 - GFF336 0.66 -1.3
374,643 - GFF336 0.66 -0.4
374,643 - GFF336 0.66 -0.5
374,643 - GFF336 0.66 -0.1
374,643 - GFF336 0.66 -1.6
374,643 - GFF336 0.66 -0.2
374,643 - GFF336 0.66 -1.2
374,643 - GFF336 0.66 -0.7
374,643 - GFF336 0.66 +0.2
374,643 - GFF336 0.66 -2.1
374,643 - GFF336 0.66 -0.4
374,643 - GFF336 0.66 -1.9
374,643 - GFF336 0.66 -0.3
375,155 + GFF336 0.89 -0.6
375,155 + GFF336 0.89 -2.5
375,224 + +0.9
375,224 + -0.1
375,224 + -1.6
375,224 + -1.8
375,224 + -0.3
375,225 - +0.1
375,225 - -1.1
375,362 - -0.6
375,413 + -0.7
375,413 + +0.6
375,428 - -1.0
375,455 + +0.2
375,455 + +0.6
375,455 + -0.1
375,486 + -0.4
375,486 + +0.3
375,560 + GFF337 0.15 -0.8
375,633 - GFF337 0.22 -0.2
375,732 - GFF337 0.32 +0.2
375,795 - GFF337 0.38 +0.4
375,798 - GFF337 0.38 -1.8
375,809 + GFF337 0.39 +0.2
375,809 + GFF337 0.39 -1.2
375,809 + GFF337 0.39 -0.1
375,810 - GFF337 0.39 -0.5
375,810 - GFF337 0.39 +0.4
375,810 - GFF337 0.39 -0.7
375,810 - GFF337 0.39 +0.1
376,331 - +1.2
376,331 - +1.0

Or see this region's nucleotide sequence