Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1457 and GFF1458 are separated by 271 nucleotides GFF1458 and GFF1459 are separated by 72 nucleotides
GFF1457 - HTH-type transcriptional activator CmpR, at 228,255 to 229,127
GFF1457
GFF1458 - Phosphoglycerate transporter protein, at 229,399 to 230,724
GFF1458
GFF1459 - Gamma-glutamylputrescine oxidoreductase, at 230,797 to 232,188
GFF1459
Position (kb) 229
230
231 Strain fitness (log2 ratio) -2
-1
0
1
2 at 228.715 kb on + strand, within GFF1457 at 228.715 kb on + strand, within GFF1457 at 228.715 kb on + strand, within GFF1457 at 228.957 kb on + strand, within GFF1457 at 228.958 kb on - strand, within GFF1457 at 228.968 kb on + strand, within GFF1457 at 228.968 kb on + strand, within GFF1457 at 229.015 kb on - strand, within GFF1457 at 229.045 kb on + strand at 229.045 kb on + strand at 229.140 kb on - strand at 229.181 kb on - strand at 229.185 kb on - strand at 229.194 kb on + strand at 229.450 kb on - strand at 229.452 kb on + strand at 229.452 kb on + strand at 229.477 kb on + strand at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.588 kb on + strand, within GFF1458 at 229.589 kb on - strand, within GFF1458 at 229.589 kb on - strand, within GFF1458 at 229.589 kb on - strand, within GFF1458 at 229.704 kb on + strand, within GFF1458 at 229.704 kb on + strand, within GFF1458 at 229.705 kb on - strand, within GFF1458 at 229.777 kb on - strand, within GFF1458 at 229.844 kb on - strand, within GFF1458 at 229.892 kb on - strand, within GFF1458 at 229.968 kb on + strand, within GFF1458 at 229.969 kb on - strand, within GFF1458 at 230.128 kb on + strand, within GFF1458 at 230.129 kb on - strand, within GFF1458 at 230.129 kb on - strand, within GFF1458 at 230.129 kb on - strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.435 kb on - strand, within GFF1458 at 230.435 kb on - strand, within GFF1458 at 230.566 kb on + strand, within GFF1458 at 230.567 kb on - strand, within GFF1458 at 231.037 kb on + strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.136 kb on + strand, within GFF1459 at 231.175 kb on + strand, within GFF1459 at 231.175 kb on + strand, within GFF1459 at 231.450 kb on + strand, within GFF1459 at 231.451 kb on - strand, within GFF1459 at 231.451 kb on - strand, within GFF1459 at 231.451 kb on - strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.658 kb on + strand, within GFF1459 at 231.658 kb on + strand, within GFF1459 at 231.659 kb on - strand, within GFF1459 at 231.659 kb on - strand, within GFF1459
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 228,715 + GFF1457 0.53 -0.2 228,715 + GFF1457 0.53 +0.9 228,715 + GFF1457 0.53 -0.5 228,957 + GFF1457 0.80 -0.1 228,958 - GFF1457 0.81 +0.0 228,968 + GFF1457 0.82 +0.9 228,968 + GFF1457 0.82 -1.3 229,015 - GFF1457 0.87 +0.0 229,045 + -0.4 229,045 + -0.5 229,140 - -1.0 229,181 - -0.4 229,185 - -0.3 229,194 + -0.7 229,450 - +0.4 229,452 + +0.5 229,452 + -0.0 229,477 + -2.0 229,577 - GFF1458 0.13 +0.7 229,577 - GFF1458 0.13 -0.3 229,577 - GFF1458 0.13 -0.5 229,577 - GFF1458 0.13 -0.9 229,577 - GFF1458 0.13 -1.7 229,588 + GFF1458 0.14 -0.4 229,589 - GFF1458 0.14 +1.3 229,589 - GFF1458 0.14 -0.8 229,589 - GFF1458 0.14 -0.9 229,704 + GFF1458 0.23 +1.2 229,704 + GFF1458 0.23 -0.2 229,705 - GFF1458 0.23 +0.1 229,777 - GFF1458 0.29 -0.3 229,844 - GFF1458 0.34 -0.4 229,892 - GFF1458 0.37 +0.8 229,968 + GFF1458 0.43 -1.9 229,969 - GFF1458 0.43 -0.8 230,128 + GFF1458 0.55 +1.0 230,129 - GFF1458 0.55 +1.4 230,129 - GFF1458 0.55 -0.1 230,129 - GFF1458 0.55 -0.3 230,434 + GFF1458 0.78 +0.0 230,434 + GFF1458 0.78 +0.4 230,434 + GFF1458 0.78 +0.0 230,434 + GFF1458 0.78 -0.0 230,435 - GFF1458 0.78 +0.6 230,435 - GFF1458 0.78 +1.9 230,566 + GFF1458 0.88 +0.3 230,567 - GFF1458 0.88 -0.9 231,037 + GFF1459 0.17 +0.4 231,038 - GFF1459 0.17 +0.0 231,038 - GFF1459 0.17 -0.7 231,038 - GFF1459 0.17 +0.1 231,038 - GFF1459 0.17 +0.4 231,136 + GFF1459 0.24 +1.3 231,175 + GFF1459 0.27 -0.3 231,175 + GFF1459 0.27 +0.9 231,450 + GFF1459 0.47 +0.6 231,451 - GFF1459 0.47 +0.8 231,451 - GFF1459 0.47 +0.4 231,451 - GFF1459 0.47 +0.5 231,655 + GFF1459 0.62 -0.6 231,655 + GFF1459 0.62 -0.5 231,655 + GFF1459 0.62 +1.4 231,655 + GFF1459 0.62 -0.1 231,655 + GFF1459 0.62 -0.1 231,656 - GFF1459 0.62 -1.1 231,656 - GFF1459 0.62 -1.1 231,656 - GFF1459 0.62 -1.0 231,656 - GFF1459 0.62 -0.8 231,658 + GFF1459 0.62 -0.6 231,658 + GFF1459 0.62 +0.4 231,659 - GFF1459 0.62 -0.5 231,659 - GFF1459 0.62 +0.1
Or see this region's nucleotide sequence