Experiment: Ying_AminoAcid20 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2044 and GFF2045 are separated by 159 nucleotides GFF2045 and GFF2046 overlap by 4 nucleotides
GFF2044 - Agmatinase (EC 3.5.3.11), at 924,266 to 925,198
GFF2044
GFF2045 - two-component response regulator, at 925,358 to 926,038
GFF2045
GFF2046 - Two-component hybrid sensor and regulator, at 926,035 to 927,804
GFF2046
Position (kb) 925
926
927 Strain fitness (log2 ratio) -2
-1
0
1
2 at 924.358 kb on - strand at 924.517 kb on - strand, within GFF2044 at 924.517 kb on - strand, within GFF2044 at 924.633 kb on + strand, within GFF2044 at 924.634 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.721 kb on - strand, within GFF2044 at 924.769 kb on + strand, within GFF2044 at 924.770 kb on - strand, within GFF2044 at 925.176 kb on + strand at 925.233 kb on + strand at 925.233 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.547 kb on + strand, within GFF2045 at 925.547 kb on + strand, within GFF2045 at 925.548 kb on - strand, within GFF2045 at 925.728 kb on - strand, within GFF2045 at 925.766 kb on + strand, within GFF2045 at 926.101 kb on + strand at 926.101 kb on + strand at 926.101 kb on + strand at 926.102 kb on - strand at 926.320 kb on + strand, within GFF2046 at 926.320 kb on + strand, within GFF2046 at 926.323 kb on + strand, within GFF2046 at 926.323 kb on + strand, within GFF2046 at 926.324 kb on - strand, within GFF2046 at 926.324 kb on - strand, within GFF2046 at 926.324 kb on - strand, within GFF2046 at 926.557 kb on + strand, within GFF2046 at 926.558 kb on - strand, within GFF2046
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 2 remove 924,358 - +0.6 924,517 - GFF2044 0.27 -0.9 924,517 - GFF2044 0.27 -0.0 924,633 + GFF2044 0.39 -0.5 924,634 - GFF2044 0.39 -0.9 924,721 - GFF2044 0.49 +0.3 924,721 - GFF2044 0.49 -0.8 924,721 - GFF2044 0.49 +2.0 924,721 - GFF2044 0.49 -0.2 924,769 + GFF2044 0.54 +1.0 924,770 - GFF2044 0.54 -0.0 925,176 + -0.1 925,233 + -0.4 925,233 + +0.4 925,344 + -0.3 925,344 + -0.2 925,344 + -0.3 925,344 + -0.3 925,345 - -0.8 925,345 - -0.4 925,345 - -0.3 925,345 - -2.2 925,345 - -0.2 925,345 - -0.2 925,547 + GFF2045 0.28 -0.6 925,547 + GFF2045 0.28 -0.6 925,548 - GFF2045 0.28 -0.2 925,728 - GFF2045 0.54 +0.2 925,766 + GFF2045 0.60 -0.7 926,101 + +0.2 926,101 + +0.1 926,101 + +0.6 926,102 - +0.2 926,320 + GFF2046 0.16 -0.4 926,320 + GFF2046 0.16 +0.0 926,323 + GFF2046 0.16 +0.4 926,323 + GFF2046 0.16 -0.1 926,324 - GFF2046 0.16 +0.1 926,324 - GFF2046 0.16 -0.1 926,324 - GFF2046 0.16 +1.2 926,557 + GFF2046 0.29 -0.7 926,558 - GFF2046 0.30 +0.6
Or see this region's nucleotide sequence