Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5482

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,482,510	-		GFF5481	0.56	+0.1
2,482,720	-		GFF5481	0.72	+1.0
2,482,720	-		GFF5481	0.72	+0.1
2,482,720	-		GFF5481	0.72	-0.1
2,482,720	-		GFF5481	0.72	-0.6
2,482,881	+		GFF5481	0.85	+0.2
2,482,881	+		GFF5481	0.85	-1.9
2,482,881	+		GFF5481	0.85	+0.1
2,482,920	+		GFF5481	0.88	-0.1
2,482,920	+		GFF5481	0.88	+1.0
2,482,921	-		GFF5481	0.88	+0.9
2,482,936	+		GFF5481	0.89	-0.4
2,482,938	+		GFF5481	0.89	+0.8
2,482,938	+		GFF5481	0.89	-0.0
2,482,938	+		GFF5481	0.89	+0.3
2,482,939	-		GFF5481	0.90	+1.3
2,482,984	-				+0.3
2,483,106	+				+0.1
2,483,122	-				+0.7
2,483,122	-				-0.4
2,483,382	+		GFF5482	0.30	+0.1
2,483,383	-		GFF5482	0.30	-1.9
2,483,502	+		GFF5482	0.42	-0.5
2,483,565	+		GFF5482	0.48	+0.7
2,483,566	-		GFF5482	0.48	-0.3
2,483,643	+		GFF5482	0.56	+0.2
2,483,979	+				-0.3
2,483,979	+				+0.8
2,483,979	+				+0.2
2,483,980	-				+0.2
2,483,980	-				+0.0
2,483,980	-				-0.2
2,483,980	-				+0.1
2,484,060	+				+1.7
2,484,062	+				-0.4
2,484,062	+				+0.3
2,484,062	+				-0.0
2,484,063	-				+0.3
2,484,063	-				-0.6
2,484,552	+		GFF5483	0.36	+0.2
2,484,553	-		GFF5483	0.36	-0.6
2,484,553	-		GFF5483	0.36	-0.0
2,484,553	-		GFF5483	0.36	+0.2
2,484,553	-		GFF5483	0.36	-0.4
2,484,553	-		GFF5483	0.36	+0.5
2,484,735	+		GFF5483	0.55	-1.0
2,484,736	-		GFF5483	0.55	+0.1
2,484,736	-		GFF5483	0.55	-0.5
2,484,736	-		GFF5483	0.55	-0.2
2,485,065	+				+0.4
2,485,065	+				-0.2
2,485,066	-				+0.2