Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3079

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3077 and GFF3078 are separated by 67 nucleotidesGFF3078 and GFF3079 are separated by 56 nucleotidesGFF3079 and GFF3080 are separated by 95 nucleotidesGFF3080 and GFF3081 are separated by 11 nucleotides GFF3077 - Ferredoxin-dependent glutamate synthase (EC 1.4.7.1), at 153,807 to 155,426 GFF3077 GFF3078 - FIG00581584: hypothetical protein, at 155,494 to 156,303 GFF3078 GFF3079 - Transcriptional regulator, TetR family, at 156,360 to 156,932 GFF3079 GFF3080 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 157,028 to 157,489 GFF3080 GFF3081 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 157,501 to 159,765 GFF3081 Position (kb) 156 157Strain fitness (log2 ratio) -2 -1 0 1at 155.389 kb on + strandat 155.390 kb on - strandat 155.390 kb on - strandat 155.390 kb on - strandat 155.402 kb on - strandat 155.402 kb on - strandat 155.454 kb on + strandat 155.454 kb on + strandat 155.454 kb on + strandat 155.454 kb on + strandat 155.455 kb on - strandat 155.455 kb on - strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.471 kb on + strandat 155.472 kb on - strandat 155.548 kb on + strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.549 kb on - strandat 155.755 kb on + strand, within GFF3078at 155.756 kb on - strand, within GFF3078at 155.756 kb on - strand, within GFF3078at 155.756 kb on - strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.848 kb on + strand, within GFF3078at 155.849 kb on - strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.172 kb on + strand, within GFF3078at 156.173 kb on - strand, within GFF3078at 156.280 kb on + strandat 156.280 kb on + strandat 156.281 kb on - strandat 156.281 kb on - strandat 156.333 kb on + strandat 156.485 kb on + strand, within GFF3079at 156.485 kb on + strand, within GFF3079at 156.486 kb on - strand, within GFF3079at 156.486 kb on - strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.492 kb on + strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.493 kb on - strand, within GFF3079at 156.498 kb on + strand, within GFF3079at 156.498 kb on + strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.499 kb on - strand, within GFF3079at 156.534 kb on + strand, within GFF3079at 156.534 kb on + strand, within GFF3079at 156.535 kb on - strand, within GFF3079at 156.535 kb on - strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.681 kb on + strand, within GFF3079at 156.682 kb on - strand, within GFF3079at 156.682 kb on - strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.684 kb on + strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.685 kb on - strand, within GFF3079at 156.969 kb on - strandat 156.995 kb on + strandat 156.996 kb on - strandat 156.996 kb on - strandat 157.002 kb on - strandat 157.002 kb on - strandat 157.439 kb on + strand, within GFF3080at 157.439 kb on + strand, within GFF3080at 157.440 kb on - strand, within GFF3080at 157.440 kb on - strand, within GFF3080at 157.440 kb on - strand, within GFF3080at 157.652 kb on - strandat 157.885 kb on + strand, within GFF3081at 157.885 kb on + strand, within GFF3081at 157.886 kb on - strand, within GFF3081at 157.886 kb on - strand, within GFF3081

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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155,389 + +0.1
155,390 - -1.4
155,390 - +0.0
155,390 - +0.4
155,402 - +1.2
155,402 - -0.0
155,454 + -2.5
155,454 + -0.6
155,454 + -1.8
155,454 + -0.1
155,455 - -0.9
155,455 - -0.0
155,471 + +0.1
155,471 + -0.5
155,471 + -0.8
155,471 + +0.4
155,471 + +0.3
155,472 - +0.3
155,548 + -0.1
155,549 - +0.2
155,549 - +0.3
155,549 - -0.4
155,549 - +1.3
155,549 - +0.7
155,549 - -0.6
155,549 - +0.1
155,755 + GFF3078 0.32 +1.1
155,756 - GFF3078 0.32 -0.7
155,756 - GFF3078 0.32 +0.8
155,756 - GFF3078 0.32 -0.3
155,848 + GFF3078 0.44 +0.4
155,848 + GFF3078 0.44 +0.6
155,848 + GFF3078 0.44 -0.8
155,848 + GFF3078 0.44 +0.6
155,849 - GFF3078 0.44 -0.6
156,172 + GFF3078 0.84 +0.2
156,172 + GFF3078 0.84 +0.3
156,172 + GFF3078 0.84 +1.3
156,172 + GFF3078 0.84 +0.2
156,173 - GFF3078 0.84 +0.2
156,280 + +0.1
156,280 + -0.0
156,281 - -0.1
156,281 - -0.2
156,333 + -2.1
156,485 + GFF3079 0.22 +0.1
156,485 + GFF3079 0.22 -1.4
156,486 - GFF3079 0.22 +0.2
156,486 - GFF3079 0.22 -0.0
156,492 + GFF3079 0.23 -0.6
156,492 + GFF3079 0.23 +0.1
156,492 + GFF3079 0.23 -0.0
156,492 + GFF3079 0.23 -0.9
156,492 + GFF3079 0.23 -1.9
156,492 + GFF3079 0.23 -0.6
156,492 + GFF3079 0.23 +0.2
156,492 + GFF3079 0.23 +0.6
156,492 + GFF3079 0.23 +1.1
156,493 - GFF3079 0.23 -0.0
156,493 - GFF3079 0.23 +1.3
156,493 - GFF3079 0.23 +0.4
156,493 - GFF3079 0.23 +1.1
156,493 - GFF3079 0.23 +0.2
156,498 + GFF3079 0.24 +0.0
156,498 + GFF3079 0.24 +0.1
156,499 - GFF3079 0.24 -0.1
156,499 - GFF3079 0.24 +0.1
156,499 - GFF3079 0.24 +0.1
156,499 - GFF3079 0.24 -0.7
156,499 - GFF3079 0.24 +0.4
156,534 + GFF3079 0.30 -0.3
156,534 + GFF3079 0.30 -0.5
156,535 - GFF3079 0.31 +0.5
156,535 - GFF3079 0.31 -0.3
156,681 + GFF3079 0.56 -1.8
156,681 + GFF3079 0.56 -0.6
156,681 + GFF3079 0.56 -0.3
156,681 + GFF3079 0.56 -0.5
156,682 - GFF3079 0.56 +0.1
156,682 - GFF3079 0.56 -0.7
156,684 + GFF3079 0.57 -0.0
156,684 + GFF3079 0.57 +0.1
156,684 + GFF3079 0.57 -0.7
156,685 - GFF3079 0.57 -0.2
156,685 - GFF3079 0.57 +0.2
156,685 - GFF3079 0.57 -0.4
156,685 - GFF3079 0.57 +0.3
156,685 - GFF3079 0.57 -2.0
156,969 - -0.0
156,995 + +0.1
156,996 - -0.2
156,996 - +0.6
157,002 - -0.3
157,002 - +0.8
157,439 + GFF3080 0.89 +0.0
157,439 + GFF3080 0.89 -0.5
157,440 - GFF3080 0.89 +0.7
157,440 - GFF3080 0.89 -1.3
157,440 - GFF3080 0.89 -0.2
157,652 - -0.1
157,885 + GFF3081 0.17 +0.4
157,885 + GFF3081 0.17 -0.3
157,886 - GFF3081 0.17 -0.4
157,886 - GFF3081 0.17 +0.4

Or see this region's nucleotide sequence