Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF678 and GFF679 are separated by 0 nucleotides GFF679 and GFF680 overlap by 2 nucleotides GFF680 and GFF681 are separated by 69 nucleotides GFF681 and GFF682 are separated by 57 nucleotides
GFF678 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 362,299 to 363,501
GFF678
GFF679 - Putative membrane protein, at 363,502 to 364,140
GFF679
GFF680 - FIG00761799: membrane protein, at 364,139 to 364,960
GFF680
GFF681 - Chromosome partitioning protein ParA, at 365,030 to 365,647
GFF681
GFF682 - Acyl dehydratase, at 365,705 to 366,169
GFF682
Position (kb) 364
365 Strain fitness (log2 ratio) -2
-1
0
1
2 at 363.626 kb on + strand, within GFF679 at 363.626 kb on + strand, within GFF679 at 363.626 kb on + strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.627 kb on - strand, within GFF679 at 363.659 kb on + strand, within GFF679 at 363.659 kb on + strand, within GFF679 at 363.660 kb on - strand, within GFF679 at 364.232 kb on + strand, within GFF680 at 364.233 kb on - strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.676 kb on + strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.677 kb on - strand, within GFF680 at 364.766 kb on + strand, within GFF680 at 364.767 kb on - strand, within GFF680 at 364.767 kb on - strand, within GFF680 at 364.856 kb on + strand, within GFF680 at 364.857 kb on - strand, within GFF680 at 364.889 kb on + strand at 364.889 kb on + strand at 364.890 kb on - strand at 364.901 kb on + strand at 364.958 kb on + strand at 364.958 kb on + strand at 364.958 kb on + strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.959 kb on - strand at 364.969 kb on - strand at 364.969 kb on - strand at 364.973 kb on + strand at 365.102 kb on + strand, within GFF681 at 365.102 kb on + strand, within GFF681 at 365.359 kb on - strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.366 kb on + strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.367 kb on - strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.540 kb on + strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681 at 365.541 kb on - strand, within GFF681
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 363,626 + GFF679 0.19 -1.2 363,626 + GFF679 0.19 +0.2 363,626 + GFF679 0.19 +0.2 363,627 - GFF679 0.20 +1.0 363,627 - GFF679 0.20 -0.3 363,627 - GFF679 0.20 -1.5 363,627 - GFF679 0.20 +0.8 363,627 - GFF679 0.20 -0.0 363,659 + GFF679 0.25 +0.2 363,659 + GFF679 0.25 -0.0 363,660 - GFF679 0.25 +0.6 364,232 + GFF680 0.11 +0.1 364,233 - GFF680 0.11 -0.4 364,676 + GFF680 0.65 -0.1 364,676 + GFF680 0.65 -0.1 364,676 + GFF680 0.65 +0.0 364,676 + GFF680 0.65 +0.8 364,676 + GFF680 0.65 -0.3 364,676 + GFF680 0.65 +0.7 364,676 + GFF680 0.65 +0.0 364,677 - GFF680 0.65 -0.9 364,677 - GFF680 0.65 +0.4 364,677 - GFF680 0.65 -1.2 364,677 - GFF680 0.65 +0.2 364,677 - GFF680 0.65 +0.6 364,677 - GFF680 0.65 +1.8 364,677 - GFF680 0.65 +0.7 364,766 + GFF680 0.76 +0.4 364,767 - GFF680 0.76 -0.3 364,767 - GFF680 0.76 -0.1 364,856 + GFF680 0.87 -0.1 364,857 - GFF680 0.87 +0.6 364,889 + +0.2 364,889 + -0.5 364,890 - -0.1 364,901 + -0.3 364,958 + +0.4 364,958 + +0.1 364,958 + +0.7 364,959 - -1.7 364,959 - -0.1 364,959 - -0.1 364,959 - +1.0 364,959 - +0.5 364,959 - -2.4 364,959 - -0.1 364,969 - +0.2 364,969 - -0.3 364,973 + +0.3 365,102 + GFF681 0.12 -0.2 365,102 + GFF681 0.12 +0.6 365,359 - GFF681 0.53 +0.2 365,366 + GFF681 0.54 +1.1 365,366 + GFF681 0.54 -0.1 365,366 + GFF681 0.54 +0.4 365,366 + GFF681 0.54 -0.8 365,366 + GFF681 0.54 -0.1 365,366 + GFF681 0.54 +0.0 365,367 - GFF681 0.55 -0.0 365,367 - GFF681 0.55 +0.1 365,367 - GFF681 0.55 +0.0 365,367 - GFF681 0.55 -0.1 365,367 - GFF681 0.55 -0.1 365,540 + GFF681 0.83 +0.2 365,540 + GFF681 0.83 +0.3 365,540 + GFF681 0.83 -0.2 365,540 + GFF681 0.83 +0.6 365,540 + GFF681 0.83 +0.2 365,541 - GFF681 0.83 +1.6 365,541 - GFF681 0.83 +0.3 365,541 - GFF681 0.83 +1.5 365,541 - GFF681 0.83 +0.3 365,541 - GFF681 0.83 +0.9 365,541 - GFF681 0.83 +0.9
Or see this region's nucleotide sequence