Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1956 and GFF1957 are separated by 89 nucleotides GFF1957 and GFF1958 are separated by 4 nucleotides GFF1958 and GFF1959 are separated by 178 nucleotides GFF1959 and GFF1960 are separated by 133 nucleotides
GFF1956 - Inner membrane protein YqiK, at 828,210 to 829,937
GFF1956
GFF1957 - Rhodanese-related sulfurtransferase, at 830,027 to 830,446
GFF1957
GFF1958 - ATP-dependent DNA helicase RecQ, at 830,451 to 832,364
GFF1958
GFF1959 - hypothetical protein, at 832,543 to 832,893
GFF1959
GFF1960 - Cell division protein FtsH (EC 3.4.24.-), at 833,027 to 835,327
GFF1960
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -2
-1
0
1 at 829.780 kb on - strand at 829.935 kb on + strand at 829.935 kb on + strand at 829.935 kb on + strand at 829.935 kb on + strand at 829.979 kb on + strand at 829.980 kb on - strand at 829.980 kb on - strand at 830.147 kb on + strand, within GFF1957 at 830.147 kb on + strand, within GFF1957 at 830.148 kb on - strand, within GFF1957 at 830.148 kb on - strand, within GFF1957 at 830.186 kb on + strand, within GFF1957 at 830.186 kb on + strand, within GFF1957 at 830.192 kb on + strand, within GFF1957 at 830.193 kb on - strand, within GFF1957 at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.444 kb on + strand at 830.445 kb on - strand at 830.445 kb on - strand at 830.445 kb on - strand at 830.445 kb on - strand at 830.445 kb on - strand at 830.445 kb on - strand at 830.445 kb on - strand at 830.634 kb on + strand at 830.634 kb on + strand at 830.835 kb on + strand, within GFF1958 at 830.835 kb on + strand, within GFF1958 at 830.836 kb on - strand, within GFF1958 at 830.973 kb on + strand, within GFF1958 at 831.003 kb on + strand, within GFF1958 at 831.004 kb on - strand, within GFF1958 at 831.132 kb on + strand, within GFF1958 at 831.228 kb on + strand, within GFF1958 at 831.300 kb on + strand, within GFF1958 at 831.300 kb on + strand, within GFF1958 at 831.301 kb on - strand, within GFF1958 at 831.390 kb on + strand, within GFF1958 at 831.462 kb on + strand, within GFF1958 at 831.462 kb on + strand, within GFF1958 at 831.463 kb on - strand, within GFF1958 at 831.463 kb on - strand, within GFF1958 at 831.463 kb on - strand, within GFF1958 at 831.465 kb on + strand, within GFF1958 at 831.465 kb on + strand, within GFF1958 at 831.466 kb on - strand, within GFF1958 at 831.466 kb on - strand, within GFF1958 at 831.523 kb on - strand, within GFF1958 at 831.523 kb on - strand, within GFF1958 at 831.669 kb on + strand, within GFF1958 at 831.669 kb on + strand, within GFF1958 at 831.669 kb on + strand, within GFF1958 at 831.670 kb on - strand, within GFF1958 at 831.774 kb on + strand, within GFF1958 at 831.775 kb on - strand, within GFF1958 at 831.775 kb on - strand, within GFF1958 at 831.864 kb on + strand, within GFF1958 at 831.864 kb on + strand, within GFF1958 at 831.864 kb on + strand, within GFF1958 at 831.865 kb on - strand, within GFF1958 at 831.982 kb on - strand, within GFF1958 at 831.982 kb on - strand, within GFF1958 at 832.323 kb on + strand at 832.323 kb on + strand at 832.323 kb on + strand at 832.324 kb on - strand at 832.324 kb on - strand at 832.324 kb on - strand at 832.394 kb on + strand at 832.394 kb on + strand at 832.395 kb on - strand at 832.395 kb on - strand at 832.398 kb on + strand at 832.405 kb on + strand at 832.406 kb on - strand at 832.406 kb on - strand at 832.490 kb on + strand at 832.491 kb on - strand at 832.584 kb on - strand, within GFF1959 at 832.748 kb on + strand, within GFF1959 at 832.847 kb on - strand, within GFF1959
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 829,780 - +1.3 829,935 + -0.2 829,935 + +0.5 829,935 + +0.2 829,935 + +0.1 829,979 + -0.8 829,980 - -0.0 829,980 - -0.2 830,147 + GFF1957 0.29 -0.2 830,147 + GFF1957 0.29 +0.6 830,148 - GFF1957 0.29 +0.4 830,148 - GFF1957 0.29 +0.3 830,186 + GFF1957 0.38 +0.1 830,186 + GFF1957 0.38 +1.5 830,192 + GFF1957 0.39 -0.5 830,193 - GFF1957 0.40 -1.7 830,444 + +0.1 830,444 + +1.1 830,444 + +0.4 830,444 + -0.5 830,444 + -0.7 830,444 + +0.3 830,444 + +0.1 830,444 + +0.2 830,444 + +0.0 830,444 + +0.6 830,445 - -0.1 830,445 - +0.3 830,445 - -0.1 830,445 - +0.3 830,445 - -0.5 830,445 - -0.0 830,445 - +0.3 830,634 + -0.5 830,634 + -1.0 830,835 + GFF1958 0.20 -2.4 830,835 + GFF1958 0.20 -0.1 830,836 - GFF1958 0.20 -0.0 830,973 + GFF1958 0.27 +0.7 831,003 + GFF1958 0.29 -1.3 831,004 - GFF1958 0.29 -0.5 831,132 + GFF1958 0.36 +0.9 831,228 + GFF1958 0.41 +0.3 831,300 + GFF1958 0.44 -0.1 831,300 + GFF1958 0.44 -1.8 831,301 - GFF1958 0.44 -0.0 831,390 + GFF1958 0.49 -1.0 831,462 + GFF1958 0.53 +0.0 831,462 + GFF1958 0.53 -0.3 831,463 - GFF1958 0.53 -0.1 831,463 - GFF1958 0.53 -0.7 831,463 - GFF1958 0.53 +0.4 831,465 + GFF1958 0.53 -0.6 831,465 + GFF1958 0.53 -0.7 831,466 - GFF1958 0.53 +0.0 831,466 - GFF1958 0.53 -0.2 831,523 - GFF1958 0.56 -0.1 831,523 - GFF1958 0.56 +0.3 831,669 + GFF1958 0.64 +0.4 831,669 + GFF1958 0.64 -0.1 831,669 + GFF1958 0.64 +0.3 831,670 - GFF1958 0.64 -0.2 831,774 + GFF1958 0.69 -0.2 831,775 - GFF1958 0.69 +0.2 831,775 - GFF1958 0.69 +0.4 831,864 + GFF1958 0.74 -0.4 831,864 + GFF1958 0.74 -0.5 831,864 + GFF1958 0.74 +0.0 831,865 - GFF1958 0.74 -0.3 831,982 - GFF1958 0.80 -0.7 831,982 - GFF1958 0.80 -0.4 832,323 + -0.8 832,323 + -0.3 832,323 + -0.0 832,324 - +0.5 832,324 - +1.0 832,324 - +1.0 832,394 + -0.7 832,394 + +0.8 832,395 - +0.2 832,395 - -0.5 832,398 + +0.7 832,405 + -0.0 832,406 - -0.5 832,406 - -0.4 832,490 + -0.0 832,491 - -0.0 832,584 - GFF1959 0.12 +0.2 832,748 + GFF1959 0.58 -0.2 832,847 - GFF1959 0.87 -0.1
Or see this region's nucleotide sequence