Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00027

Experiment: L-Histidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00026 and MPMX26_00027 are separated by 23 nucleotidesMPMX26_00027 and MPMX26_00028 are separated by 18 nucleotides MPMX26_00026: MPMX26_00026 - Alkanesulfonate monooxygenase, at 28,870 to 30,045 _00026 MPMX26_00027: MPMX26_00027 - Putative aliphatic sulfonates-binding protein, at 30,069 to 31,058 _00027 MPMX26_00028: MPMX26_00028 - Putative aliphatic sulfonates-binding protein, at 31,077 to 32,042 _00028 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 29.127 kb on + strand, within MPMX26_00026at 29.173 kb on - strand, within MPMX26_00026at 29.227 kb on + strand, within MPMX26_00026at 29.326 kb on - strand, within MPMX26_00026at 29.525 kb on + strand, within MPMX26_00026at 29.533 kb on - strand, within MPMX26_00026at 29.652 kb on + strand, within MPMX26_00026at 30.060 kb on - strandat 30.070 kb on - strandat 30.408 kb on + strand, within MPMX26_00027at 30.771 kb on - strand, within MPMX26_00027at 31.166 kb on + strandat 31.166 kb on + strandat 31.166 kb on + strandat 31.974 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
remove
29,127 + MPMX26_00026 0.22 +0.4
29,173 - MPMX26_00026 0.26 -0.0
29,227 + MPMX26_00026 0.30 +0.3
29,326 - MPMX26_00026 0.39 -0.4
29,525 + MPMX26_00026 0.56 +0.4
29,533 - MPMX26_00026 0.56 +0.7
29,652 + MPMX26_00026 0.66 -0.6
30,060 - +0.1
30,070 - -0.3
30,408 + MPMX26_00027 0.34 -0.2
30,771 - MPMX26_00027 0.71 -1.4
31,166 + -0.1
31,166 + -0.1
31,166 + +0.2
31,974 + -0.2

Or see this region's nucleotide sequence