Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13280

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_13270 and arfB are separated by 96 nucleotidesarfB and OKGIIK_13280 overlap by 4 nucleotidesOKGIIK_13280 and OKGIIK_13285 are separated by 28 nucleotidesOKGIIK_13285 and wcaG are separated by 258 nucleotides OKGIIK_13270: OKGIIK_13270 - pseudouridylate synthase, at 2,864,250 to 2,864,966 _13270 OKGIIK_13275: arfB - aminoacyl-tRNA hydrolase, at 2,865,063 to 2,865,485 arfB OKGIIK_13280: OKGIIK_13280 - Acyltransferase, at 2,865,482 to 2,866,078 _13280 OKGIIK_13285: OKGIIK_13285 - LysE type translocator, at 2,866,107 to 2,866,736 _13285 OKGIIK_13290: wcaG - nucleoside-diphosphate sugar epimerase, at 2,866,995 to 2,868,011 wcaG Position (kb) 2865 2866 2867Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2864.505 kb on + strand, within OKGIIK_13270at 2864.505 kb on + strand, within OKGIIK_13270at 2864.505 kb on + strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.556 kb on + strand, within OKGIIK_13270at 2864.557 kb on - strand, within OKGIIK_13270at 2864.611 kb on - strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.794 kb on - strand, within OKGIIK_13270at 2864.794 kb on - strand, within OKGIIK_13270at 2864.794 kb on - strand, within OKGIIK_13270at 2864.905 kb on - strandat 2865.050 kb on + strandat 2865.050 kb on + strandat 2865.050 kb on + strandat 2865.051 kb on - strandat 2865.712 kb on + strand, within OKGIIK_13280at 2865.712 kb on + strand, within OKGIIK_13280at 2865.712 kb on + strand, within OKGIIK_13280at 2865.712 kb on + strand, within OKGIIK_13280at 2865.712 kb on + strand, within OKGIIK_13280at 2865.713 kb on - strand, within OKGIIK_13280at 2865.934 kb on - strand, within OKGIIK_13280at 2865.960 kb on - strand, within OKGIIK_13280at 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.043 kb on + strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.044 kb on - strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.089 kb on + strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.090 kb on - strandat 2866.125 kb on + strandat 2866.125 kb on + strandat 2866.125 kb on + strandat 2866.125 kb on + strandat 2866.178 kb on + strand, within OKGIIK_13285at 2866.178 kb on + strand, within OKGIIK_13285at 2866.178 kb on + strand, within OKGIIK_13285at 2866.178 kb on + strand, within OKGIIK_13285at 2866.178 kb on + strand, within OKGIIK_13285at 2866.178 kb on + strand, within OKGIIK_13285at 2866.178 kb on + strand, within OKGIIK_13285at 2866.179 kb on - strand, within OKGIIK_13285at 2866.179 kb on - strand, within OKGIIK_13285at 2866.179 kb on - strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.185 kb on + strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.186 kb on - strand, within OKGIIK_13285at 2866.283 kb on - strand, within OKGIIK_13285at 2866.283 kb on - strand, within OKGIIK_13285at 2866.283 kb on - strand, within OKGIIK_13285at 2866.325 kb on + strand, within OKGIIK_13285at 2866.326 kb on - strand, within OKGIIK_13285at 2866.338 kb on + strand, within OKGIIK_13285at 2866.338 kb on + strand, within OKGIIK_13285at 2866.339 kb on - strand, within OKGIIK_13285at 2866.339 kb on - strand, within OKGIIK_13285at 2866.339 kb on - strand, within OKGIIK_13285at 2866.339 kb on - strand, within OKGIIK_13285at 2866.339 kb on - strand, within OKGIIK_13285at 2866.339 kb on - strand, within OKGIIK_13285at 2866.353 kb on + strand, within OKGIIK_13285at 2866.483 kb on + strand, within OKGIIK_13285at 2866.483 kb on + strand, within OKGIIK_13285at 2866.483 kb on + strand, within OKGIIK_13285at 2866.484 kb on - strand, within OKGIIK_13285at 2866.484 kb on - strand, within OKGIIK_13285at 2866.484 kb on - strand, within OKGIIK_13285at 2866.494 kb on + strand, within OKGIIK_13285at 2866.494 kb on + strand, within OKGIIK_13285at 2866.494 kb on + strand, within OKGIIK_13285at 2866.494 kb on + strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.495 kb on - strand, within OKGIIK_13285at 2866.558 kb on + strand, within OKGIIK_13285at 2866.559 kb on - strand, within OKGIIK_13285at 2866.559 kb on - strand, within OKGIIK_13285at 2866.775 kb on - strandat 2866.866 kb on + strandat 2866.866 kb on + strandat 2866.867 kb on - strandat 2866.867 kb on - strandat 2866.867 kb on - strandat 2866.867 kb on - strandat 2866.877 kb on + strandat 2866.878 kb on - strandat 2866.878 kb on - strandat 2866.878 kb on - strandat 2866.906 kb on + strandat 2866.906 kb on + strandat 2866.907 kb on - strandat 2866.907 kb on - strandat 2866.913 kb on - strandat 2866.913 kb on - strandat 2866.926 kb on + strandat 2866.926 kb on + strandat 2866.926 kb on + strandat 2866.926 kb on + strandat 2866.926 kb on + strandat 2866.927 kb on - strandat 2866.927 kb on - strandat 2866.927 kb on - strandat 2866.950 kb on + strandat 2866.950 kb on + strandat 2866.950 kb on + strandat 2866.950 kb on + strandat 2866.950 kb on + strandat 2866.950 kb on + strandat 2866.951 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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2,864,505 + OKGIIK_13270 0.36 +1.1
2,864,505 + OKGIIK_13270 0.36 +1.1
2,864,505 + OKGIIK_13270 0.36 -0.3
2,864,506 - OKGIIK_13270 0.36 -0.9
2,864,506 - OKGIIK_13270 0.36 +0.1
2,864,506 - OKGIIK_13270 0.36 -0.5
2,864,506 - OKGIIK_13270 0.36 +0.6
2,864,506 - OKGIIK_13270 0.36 -0.0
2,864,506 - OKGIIK_13270 0.36 -0.6
2,864,556 + OKGIIK_13270 0.43 +1.1
2,864,557 - OKGIIK_13270 0.43 -1.0
2,864,611 - OKGIIK_13270 0.50 -1.2
2,864,793 + OKGIIK_13270 0.76 -0.8
2,864,793 + OKGIIK_13270 0.76 +1.1
2,864,793 + OKGIIK_13270 0.76 +0.1
2,864,793 + OKGIIK_13270 0.76 +0.9
2,864,794 - OKGIIK_13270 0.76 +0.4
2,864,794 - OKGIIK_13270 0.76 -0.1
2,864,794 - OKGIIK_13270 0.76 -0.9
2,864,905 - -0.2
2,865,050 + -0.2
2,865,050 + -0.3
2,865,050 + -2.1
2,865,051 - +0.1
2,865,712 + OKGIIK_13280 0.39 +0.6
2,865,712 + OKGIIK_13280 0.39 -0.9
2,865,712 + OKGIIK_13280 0.39 -1.4
2,865,712 + OKGIIK_13280 0.39 -0.1
2,865,712 + OKGIIK_13280 0.39 +0.9
2,865,713 - OKGIIK_13280 0.39 -1.8
2,865,934 - OKGIIK_13280 0.76 +0.6
2,865,960 - OKGIIK_13280 0.80 +1.2
2,866,043 + +0.6
2,866,043 + +1.1
2,866,043 + +0.7
2,866,043 + +0.6
2,866,043 + -1.9
2,866,043 + -1.7
2,866,043 + -1.9
2,866,043 + -0.7
2,866,044 - +1.9
2,866,044 - -0.2
2,866,044 - -0.3
2,866,044 - +1.7
2,866,044 - +0.8
2,866,044 - +0.4
2,866,044 - +0.1
2,866,044 - +0.5
2,866,044 - -0.9
2,866,044 - +0.1
2,866,044 - -0.2
2,866,044 - -0.4
2,866,089 + +1.2
2,866,089 + -0.3
2,866,089 + -0.6
2,866,089 + -2.4
2,866,089 + -2.2
2,866,089 + +0.1
2,866,089 + +0.6
2,866,089 + +0.2
2,866,089 + -1.7
2,866,089 + +0.6
2,866,089 + -0.7
2,866,089 + -0.2
2,866,089 + +0.5
2,866,089 + +0.8
2,866,089 + -1.5
2,866,089 + -0.2
2,866,089 + -0.7
2,866,089 + +0.2
2,866,089 + +0.5
2,866,090 - -1.2
2,866,090 - -0.6
2,866,090 - +0.5
2,866,090 - +1.8
2,866,090 - -1.2
2,866,090 - -0.3
2,866,090 - +0.8
2,866,090 - +0.1
2,866,090 - -0.0
2,866,090 - -0.5
2,866,090 - -0.8
2,866,090 - -1.2
2,866,090 - +0.5
2,866,090 - +1.3
2,866,090 - +0.4
2,866,090 - -0.9
2,866,090 - -0.4
2,866,090 - -0.3
2,866,090 - +0.8
2,866,125 + -0.2
2,866,125 + +1.0
2,866,125 + -0.2
2,866,125 + -1.4
2,866,178 + OKGIIK_13285 0.11 -0.7
2,866,178 + OKGIIK_13285 0.11 +0.3
2,866,178 + OKGIIK_13285 0.11 -1.9
2,866,178 + OKGIIK_13285 0.11 -1.0
2,866,178 + OKGIIK_13285 0.11 -0.9
2,866,178 + OKGIIK_13285 0.11 -2.1
2,866,178 + OKGIIK_13285 0.11 +0.5
2,866,179 - OKGIIK_13285 0.11 -0.6
2,866,179 - OKGIIK_13285 0.11 +1.5
2,866,179 - OKGIIK_13285 0.11 -1.9
2,866,185 + OKGIIK_13285 0.12 -0.5
2,866,185 + OKGIIK_13285 0.12 -0.3
2,866,185 + OKGIIK_13285 0.12 -0.2
2,866,185 + OKGIIK_13285 0.12 -0.9
2,866,185 + OKGIIK_13285 0.12 +1.0
2,866,185 + OKGIIK_13285 0.12 +0.3
2,866,185 + OKGIIK_13285 0.12 +0.8
2,866,185 + OKGIIK_13285 0.12 +0.8
2,866,185 + OKGIIK_13285 0.12 -1.1
2,866,185 + OKGIIK_13285 0.12 +0.7
2,866,185 + OKGIIK_13285 0.12 -0.5
2,866,185 + OKGIIK_13285 0.12 -1.4
2,866,185 + OKGIIK_13285 0.12 -1.6
2,866,185 + OKGIIK_13285 0.12 +0.0
2,866,185 + OKGIIK_13285 0.12 +0.6
2,866,185 + OKGIIK_13285 0.12 -0.2
2,866,185 + OKGIIK_13285 0.12 +0.1
2,866,186 - OKGIIK_13285 0.13 -1.5
2,866,186 - OKGIIK_13285 0.13 -0.6
2,866,186 - OKGIIK_13285 0.13 +0.6
2,866,186 - OKGIIK_13285 0.13 +0.4
2,866,186 - OKGIIK_13285 0.13 +0.4
2,866,186 - OKGIIK_13285 0.13 +0.1
2,866,186 - OKGIIK_13285 0.13 -0.4
2,866,186 - OKGIIK_13285 0.13 -0.6
2,866,186 - OKGIIK_13285 0.13 +0.2
2,866,186 - OKGIIK_13285 0.13 -2.5
2,866,283 - OKGIIK_13285 0.28 -0.1
2,866,283 - OKGIIK_13285 0.28 +1.4
2,866,283 - OKGIIK_13285 0.28 -0.2
2,866,325 + OKGIIK_13285 0.35 +1.1
2,866,326 - OKGIIK_13285 0.35 -1.2
2,866,338 + OKGIIK_13285 0.37 -0.9
2,866,338 + OKGIIK_13285 0.37 -0.8
2,866,339 - OKGIIK_13285 0.37 -1.4
2,866,339 - OKGIIK_13285 0.37 -1.1
2,866,339 - OKGIIK_13285 0.37 -0.9
2,866,339 - OKGIIK_13285 0.37 -0.2
2,866,339 - OKGIIK_13285 0.37 +0.6
2,866,339 - OKGIIK_13285 0.37 +1.1
2,866,353 + OKGIIK_13285 0.39 +0.2
2,866,483 + OKGIIK_13285 0.60 +0.6
2,866,483 + OKGIIK_13285 0.60 +1.1
2,866,483 + OKGIIK_13285 0.60 -0.2
2,866,484 - OKGIIK_13285 0.60 +1.2
2,866,484 - OKGIIK_13285 0.60 -1.9
2,866,484 - OKGIIK_13285 0.60 -2.9
2,866,494 + OKGIIK_13285 0.61 -2.2
2,866,494 + OKGIIK_13285 0.61 -0.4
2,866,494 + OKGIIK_13285 0.61 -0.1
2,866,494 + OKGIIK_13285 0.61 +0.2
2,866,495 - OKGIIK_13285 0.62 -0.8
2,866,495 - OKGIIK_13285 0.62 +0.6
2,866,495 - OKGIIK_13285 0.62 -0.9
2,866,495 - OKGIIK_13285 0.62 -0.0
2,866,495 - OKGIIK_13285 0.62 -0.5
2,866,495 - OKGIIK_13285 0.62 +0.8
2,866,495 - OKGIIK_13285 0.62 +1.1
2,866,495 - OKGIIK_13285 0.62 -1.4
2,866,495 - OKGIIK_13285 0.62 +1.1
2,866,558 + OKGIIK_13285 0.72 -0.1
2,866,559 - OKGIIK_13285 0.72 -0.5
2,866,559 - OKGIIK_13285 0.72 -1.0
2,866,775 - -2.0
2,866,866 + -0.6
2,866,866 + +0.6
2,866,867 - -0.0
2,866,867 - -1.0
2,866,867 - -1.5
2,866,867 - -0.5
2,866,877 + -0.5
2,866,878 - -0.3
2,866,878 - -0.8
2,866,878 - +0.4
2,866,906 + -0.9
2,866,906 + +0.5
2,866,907 - +0.4
2,866,907 - -2.9
2,866,913 - +0.6
2,866,913 - -0.3
2,866,926 + +0.3
2,866,926 + -0.1
2,866,926 + +0.8
2,866,926 + -0.2
2,866,926 + -0.2
2,866,927 - +1.0
2,866,927 - +0.6
2,866,927 - -0.2
2,866,950 + -1.2
2,866,950 + -0.6
2,866,950 + -0.1
2,866,950 + -0.9
2,866,950 + +0.4
2,866,950 + +0.0
2,866,951 - -0.3

Or see this region's nucleotide sequence