Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5171 and GFF5172 are separated by 403 nucleotides GFF5172 and GFF5173 are separated by 97 nucleotides GFF5173 and GFF5174 are separated by 176 nucleotides
GFF5171 - Aminomethyltransferase, at 52,306 to 53,430
GFF5171
GFF5172 - Major cold shock protein CspA, at 53,834 to 54,046
GFF5172
GFF5173 - hypothetical protein, at 54,144 to 54,632
GFF5173
GFF5174 - Quinolinate synthase A, at 54,809 to 55,867
GFF5174
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 52.934 kb on + strand, within GFF5171 at 53.023 kb on + strand, within GFF5171 at 53.023 kb on + strand, within GFF5171 at 53.024 kb on - strand, within GFF5171 at 53.312 kb on - strand, within GFF5171 at 53.326 kb on + strand at 53.326 kb on + strand at 53.327 kb on - strand at 53.327 kb on - strand at 53.327 kb on - strand at 53.327 kb on - strand at 53.444 kb on + strand at 53.473 kb on + strand at 53.474 kb on - strand at 53.527 kb on + strand at 53.540 kb on + strand at 53.542 kb on + strand at 53.542 kb on + strand at 53.543 kb on - strand at 53.576 kb on + strand at 53.587 kb on + strand at 53.587 kb on + strand at 53.588 kb on - strand at 53.666 kb on - strand at 53.720 kb on - strand at 53.725 kb on - strand at 53.735 kb on + strand at 53.812 kb on + strand at 53.812 kb on + strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.893 kb on + strand, within GFF5172 at 53.893 kb on + strand, within GFF5172 at 53.925 kb on + strand, within GFF5172 at 53.926 kb on - strand, within GFF5172 at 54.030 kb on + strand at 54.030 kb on + strand at 54.030 kb on + strand at 54.055 kb on + strand at 54.073 kb on - strand at 54.073 kb on - strand at 54.078 kb on + strand at 54.079 kb on - strand at 54.103 kb on - strand at 54.220 kb on - strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.268 kb on - strand, within GFF5173 at 54.373 kb on + strand, within GFF5173 at 54.373 kb on + strand, within GFF5173 at 54.373 kb on + strand, within GFF5173 at 54.500 kb on + strand, within GFF5173 at 54.500 kb on + strand, within GFF5173 at 54.501 kb on - strand, within GFF5173 at 54.501 kb on - strand, within GFF5173 at 54.530 kb on - strand, within GFF5173 at 54.530 kb on - strand, within GFF5173 at 54.530 kb on - strand, within GFF5173 at 54.588 kb on + strand at 54.589 kb on - strand at 54.630 kb on + strand at 54.630 kb on + strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.640 kb on - strand at 54.688 kb on + strand at 54.689 kb on - strand at 54.689 kb on - strand at 54.697 kb on + strand at 54.698 kb on - strand at 54.723 kb on + strand at 54.794 kb on + strand at 54.795 kb on - strand at 54.798 kb on - strand at 54.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 52,934 + GFF5171 0.56 -0.8 53,023 + GFF5171 0.64 -0.2 53,023 + GFF5171 0.64 +0.6 53,024 - GFF5171 0.64 +1.3 53,312 - GFF5171 0.89 -1.1 53,326 + +0.4 53,326 + +0.6 53,327 - -0.0 53,327 - -0.7 53,327 - +0.8 53,327 - -0.2 53,444 + -0.5 53,473 + -1.7 53,474 - +0.2 53,527 + -0.8 53,540 + +0.3 53,542 + -0.5 53,542 + -0.7 53,543 - +1.2 53,576 + -0.6 53,587 + -0.3 53,587 + -0.5 53,588 - +1.3 53,666 - +0.2 53,720 - +0.4 53,725 - +1.0 53,735 + +0.2 53,812 + -1.1 53,812 + -0.6 53,829 - -0.4 53,829 - -0.6 53,893 + GFF5172 0.28 -0.3 53,893 + GFF5172 0.28 -1.2 53,925 + GFF5172 0.43 -0.5 53,926 - GFF5172 0.43 -1.4 54,030 + +1.4 54,030 + -1.0 54,030 + +0.3 54,055 + +0.8 54,073 - +0.4 54,073 - -0.6 54,078 + +0.5 54,079 - +0.7 54,103 - -0.6 54,220 - GFF5173 0.16 -3.2 54,267 + GFF5173 0.25 +0.4 54,267 + GFF5173 0.25 +0.5 54,267 + GFF5173 0.25 +0.3 54,267 + GFF5173 0.25 -0.7 54,268 - GFF5173 0.25 +0.0 54,373 + GFF5173 0.47 +0.9 54,373 + GFF5173 0.47 -0.6 54,373 + GFF5173 0.47 +0.5 54,500 + GFF5173 0.73 -0.9 54,500 + GFF5173 0.73 -0.6 54,501 - GFF5173 0.73 +1.0 54,501 - GFF5173 0.73 -1.6 54,530 - GFF5173 0.79 +0.8 54,530 - GFF5173 0.79 -0.4 54,530 - GFF5173 0.79 -1.0 54,588 + +0.8 54,589 - -0.1 54,630 + -0.1 54,630 + +0.4 54,631 - +1.4 54,631 - -0.8 54,640 - -1.7 54,688 + -1.5 54,689 - +0.1 54,689 - +0.1 54,697 + +0.4 54,698 - -0.1 54,723 + -1.1 54,794 + -0.9 54,795 - -0.1 54,798 - +0.4 54,798 - +0.4
Or see this region's nucleotide sequence