Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3354 and GFF3355 overlap by 47 nucleotides GFF3355 and GFF3356 overlap by 4 nucleotides GFF3356 and GFF3357 are separated by 238 nucleotides GFF3357 and GFF3358 are separated by 148 nucleotides
GFF3354 - hypothetical protein, at 362,200 to 363,408
GFF3354
GFF3355 - HTH-type transcriptional regulator HmrR, at 363,362 to 363,775
GFF3355
GFF3356 - Copper-exporting P-type ATPase, at 363,772 to 366,165
GFF3356
GFF3357 - hypothetical protein, at 366,404 to 366,787
GFF3357
GFF3358 - Copper chaperone CopZ, at 366,936 to 367,133
GFF3358
Position (kb) 363
364
365
366
367 Strain fitness (log2 ratio) -2
-1
0
1 at 362.934 kb on + strand, within GFF3354 at 363.104 kb on - strand, within GFF3354 at 363.104 kb on - strand, within GFF3354 at 363.278 kb on - strand, within GFF3354 at 363.278 kb on - strand, within GFF3354 at 363.333 kb on + strand at 363.334 kb on - strand at 363.661 kb on - strand, within GFF3355 at 363.718 kb on - strand, within GFF3355 at 363.720 kb on + strand, within GFF3355 at 363.920 kb on + strand at 363.920 kb on + strand at 363.921 kb on - strand at 363.959 kb on + strand at 364.129 kb on + strand, within GFF3356 at 364.130 kb on - strand, within GFF3356 at 364.130 kb on - strand, within GFF3356 at 364.269 kb on + strand, within GFF3356 at 364.942 kb on + strand, within GFF3356 at 365.373 kb on - strand, within GFF3356 at 365.386 kb on + strand, within GFF3356 at 365.387 kb on - strand, within GFF3356 at 365.459 kb on + strand, within GFF3356 at 365.460 kb on - strand, within GFF3356 at 365.460 kb on - strand, within GFF3356 at 365.475 kb on - strand, within GFF3356 at 365.552 kb on + strand, within GFF3356 at 365.552 kb on + strand, within GFF3356 at 365.552 kb on + strand, within GFF3356 at 365.553 kb on - strand, within GFF3356 at 365.553 kb on - strand, within GFF3356 at 365.553 kb on - strand, within GFF3356 at 365.553 kb on - strand, within GFF3356 at 366.181 kb on + strand at 366.181 kb on + strand at 366.182 kb on - strand at 366.192 kb on + strand at 366.192 kb on + strand at 366.193 kb on - strand at 366.193 kb on - strand at 366.432 kb on + strand at 366.432 kb on + strand at 366.432 kb on + strand at 366.432 kb on + strand at 366.432 kb on + strand at 366.432 kb on + strand at 366.432 kb on + strand at 366.433 kb on - strand at 366.433 kb on - strand at 366.462 kb on + strand, within GFF3357 at 366.463 kb on - strand, within GFF3357 at 366.463 kb on - strand, within GFF3357 at 366.491 kb on - strand, within GFF3357 at 366.642 kb on + strand, within GFF3357 at 366.642 kb on + strand, within GFF3357 at 366.642 kb on + strand, within GFF3357 at 366.643 kb on - strand, within GFF3357 at 366.643 kb on - strand, within GFF3357 at 366.643 kb on - strand, within GFF3357 at 367.113 kb on + strand, within GFF3358 at 367.113 kb on + strand, within GFF3358 at 367.113 kb on + strand, within GFF3358 at 367.113 kb on + strand, within GFF3358 at 367.113 kb on + strand, within GFF3358 at 367.114 kb on - strand at 367.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 362,934 + GFF3354 0.61 -0.6 363,104 - GFF3354 0.75 +0.8 363,104 - GFF3354 0.75 +0.4 363,278 - GFF3354 0.89 -0.4 363,278 - GFF3354 0.89 +0.1 363,333 + +0.1 363,334 - -0.3 363,661 - GFF3355 0.72 +0.2 363,718 - GFF3355 0.86 -1.1 363,720 + GFF3355 0.86 -0.5 363,920 + -1.1 363,920 + -0.5 363,921 - -1.7 363,959 + -0.4 364,129 + GFF3356 0.15 -1.9 364,130 - GFF3356 0.15 -0.8 364,130 - GFF3356 0.15 -0.1 364,269 + GFF3356 0.21 -1.4 364,942 + GFF3356 0.49 -0.7 365,373 - GFF3356 0.67 -0.8 365,386 + GFF3356 0.67 +0.4 365,387 - GFF3356 0.67 -0.7 365,459 + GFF3356 0.70 -0.7 365,460 - GFF3356 0.71 -1.2 365,460 - GFF3356 0.71 -0.8 365,475 - GFF3356 0.71 -0.5 365,552 + GFF3356 0.74 -1.2 365,552 + GFF3356 0.74 -0.2 365,552 + GFF3356 0.74 -1.3 365,553 - GFF3356 0.74 -0.3 365,553 - GFF3356 0.74 -1.5 365,553 - GFF3356 0.74 -2.3 365,553 - GFF3356 0.74 -1.5 366,181 + -0.4 366,181 + -1.1 366,182 - -0.2 366,192 + +0.2 366,192 + -0.1 366,193 - +0.8 366,193 - +0.2 366,432 + +0.7 366,432 + +0.1 366,432 + +0.1 366,432 + +0.5 366,432 + +1.7 366,432 + +1.2 366,432 + -1.2 366,433 - -0.3 366,433 - +0.3 366,462 + GFF3357 0.15 -0.3 366,463 - GFF3357 0.15 -0.0 366,463 - GFF3357 0.15 +0.3 366,491 - GFF3357 0.23 -0.7 366,642 + GFF3357 0.62 +0.4 366,642 + GFF3357 0.62 -0.5 366,642 + GFF3357 0.62 +0.0 366,643 - GFF3357 0.62 -0.4 366,643 - GFF3357 0.62 -0.2 366,643 - GFF3357 0.62 -0.1 367,113 + GFF3358 0.89 -0.2 367,113 + GFF3358 0.89 +1.1 367,113 + GFF3358 0.89 -0.1 367,113 + GFF3358 0.89 -0.6 367,113 + GFF3358 0.89 -0.3 367,114 - -0.1 367,114 - -1.0
Or see this region's nucleotide sequence