Strain Fitness in Pseudomonas sp. DMC3 around GFF2957

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2956 and GFF2957 are separated by 133 nucleotidesGFF2957 and GFF2958 are separated by 0 nucleotidesGFF2958 and GFF2959 are separated by 3 nucleotides GFF2956 - Nitronate monooxygenase, at 329,952 to 331,016 GFF2956 GFF2957 - Molybdate-binding protein ModA, at 331,150 to 331,917 GFF2957 GFF2958 - Molybdenum transport system permease protein ModB, at 331,918 to 332,598 GFF2958 GFF2959 - Vitamin B12 import ATP-binding protein BtuD, at 332,602 to 333,681 GFF2959 Position (kb) 331 332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 330.431 kb on + strand, within GFF2956at 330.432 kb on - strand, within GFF2956at 330.492 kb on + strand, within GFF2956at 330.492 kb on + strand, within GFF2956at 330.492 kb on + strand, within GFF2956at 330.493 kb on - strand, within GFF2956at 330.684 kb on + strand, within GFF2956at 330.685 kb on - strand, within GFF2956at 331.020 kb on + strandat 331.037 kb on + strandat 331.038 kb on - strandat 331.038 kb on - strandat 331.060 kb on + strandat 331.066 kb on + strandat 331.066 kb on + strandat 331.069 kb on - strandat 331.069 kb on - strandat 331.071 kb on - strandat 331.080 kb on + strandat 331.081 kb on - strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.147 kb on + strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.148 kb on - strandat 331.351 kb on + strand, within GFF2957at 331.352 kb on - strand, within GFF2957at 331.352 kb on - strand, within GFF2957at 331.462 kb on + strand, within GFF2957at 331.462 kb on + strand, within GFF2957at 331.463 kb on - strand, within GFF2957at 331.463 kb on - strand, within GFF2957at 331.463 kb on - strand, within GFF2957at 331.504 kb on + strand, within GFF2957at 331.505 kb on - strand, within GFF2957at 331.505 kb on - strand, within GFF2957at 331.505 kb on - strand, within GFF2957at 331.508 kb on + strand, within GFF2957at 331.508 kb on + strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.509 kb on - strand, within GFF2957at 331.544 kb on - strand, within GFF2957at 331.544 kb on - strand, within GFF2957at 331.675 kb on + strand, within GFF2957at 331.861 kb on + strandat 331.861 kb on + strandat 331.861 kb on + strandat 331.906 kb on + strandat 331.906 kb on + strandat 331.915 kb on + strandat 331.915 kb on + strandat 331.916 kb on - strandat 331.916 kb on - strandat 331.916 kb on - strandat 332.110 kb on + strand, within GFF2958at 332.110 kb on + strand, within GFF2958at 332.110 kb on + strand, within GFF2958at 332.110 kb on + strand, within GFF2958at 332.110 kb on + strand, within GFF2958at 332.111 kb on - strand, within GFF2958at 332.111 kb on - strand, within GFF2958at 332.111 kb on - strand, within GFF2958at 332.221 kb on + strand, within GFF2958at 332.221 kb on + strand, within GFF2958at 332.221 kb on + strand, within GFF2958at 332.221 kb on + strand, within GFF2958at 332.221 kb on + strand, within GFF2958at 332.221 kb on + strand, within GFF2958at 332.222 kb on - strand, within GFF2958at 332.222 kb on - strand, within GFF2958at 332.222 kb on - strand, within GFF2958at 332.222 kb on - strand, within GFF2958at 332.222 kb on - strand, within GFF2958at 332.474 kb on - strand, within GFF2958at 332.497 kb on + strand, within GFF2958at 332.498 kb on - strand, within GFF2958at 332.563 kb on + strandat 332.563 kb on + strandat 332.564 kb on - strandat 332.612 kb on + strandat 332.612 kb on + strandat 332.612 kb on + strandat 332.613 kb on - strandat 332.613 kb on - strandat 332.629 kb on + strandat 332.630 kb on - strandat 332.630 kb on - strandat 332.630 kb on - strandat 332.630 kb on - strandat 332.824 kb on - strand, within GFF2959at 332.839 kb on + strand, within GFF2959at 332.839 kb on + strand, within GFF2959at 332.839 kb on + strand, within GFF2959at 332.840 kb on - strand, within GFF2959at 332.840 kb on - strand, within GFF2959at 332.840 kb on - strand, within GFF2959

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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330,431 + GFF2956 0.45 +0.3
330,432 - GFF2956 0.45 -0.9
330,492 + GFF2956 0.51 -0.5
330,492 + GFF2956 0.51 -1.3
330,492 + GFF2956 0.51 -0.9
330,493 - GFF2956 0.51 +0.0
330,684 + GFF2956 0.69 +1.8
330,685 - GFF2956 0.69 -1.1
331,020 + -1.5
331,037 + -0.5
331,038 - +0.2
331,038 - +0.0
331,060 + -0.4
331,066 + -0.3
331,066 + +0.5
331,069 - +0.1
331,069 - +0.7
331,071 - +0.4
331,080 + -0.0
331,081 - +0.1
331,147 + -0.6
331,147 + -0.5
331,147 + +0.1
331,147 + -0.6
331,147 + -0.5
331,147 + -0.3
331,147 + +1.0
331,148 - -1.7
331,148 - +0.4
331,148 - -1.2
331,148 - -2.0
331,148 - -0.7
331,351 + GFF2957 0.26 -0.1
331,352 - GFF2957 0.26 -0.2
331,352 - GFF2957 0.26 +0.0
331,462 + GFF2957 0.41 -1.3
331,462 + GFF2957 0.41 -0.9
331,463 - GFF2957 0.41 -3.9
331,463 - GFF2957 0.41 -0.9
331,463 - GFF2957 0.41 -0.5
331,504 + GFF2957 0.46 -0.5
331,505 - GFF2957 0.46 -1.9
331,505 - GFF2957 0.46 +0.2
331,505 - GFF2957 0.46 -1.0
331,508 + GFF2957 0.47 -0.7
331,508 + GFF2957 0.47 +0.7
331,509 - GFF2957 0.47 -1.3
331,509 - GFF2957 0.47 -1.0
331,509 - GFF2957 0.47 -1.5
331,509 - GFF2957 0.47 -1.9
331,509 - GFF2957 0.47 -0.2
331,544 - GFF2957 0.51 -1.7
331,544 - GFF2957 0.51 -0.2
331,675 + GFF2957 0.68 -1.1
331,861 + -1.2
331,861 + -0.7
331,861 + -0.7
331,906 + +0.6
331,906 + +0.1
331,915 + -0.7
331,915 + -0.4
331,916 - -1.2
331,916 - -0.3
331,916 - -0.3
332,110 + GFF2958 0.28 -2.9
332,110 + GFF2958 0.28 -1.9
332,110 + GFF2958 0.28 -3.0
332,110 + GFF2958 0.28 -1.0
332,110 + GFF2958 0.28 -1.2
332,111 - GFF2958 0.28 -1.9
332,111 - GFF2958 0.28 +0.1
332,111 - GFF2958 0.28 -0.9
332,221 + GFF2958 0.44 -0.7
332,221 + GFF2958 0.44 -0.6
332,221 + GFF2958 0.44 -0.9
332,221 + GFF2958 0.44 -2.8
332,221 + GFF2958 0.44 -2.5
332,221 + GFF2958 0.44 +0.3
332,222 - GFF2958 0.45 -1.0
332,222 - GFF2958 0.45 -0.9
332,222 - GFF2958 0.45 -0.3
332,222 - GFF2958 0.45 -0.1
332,222 - GFF2958 0.45 -1.5
332,474 - GFF2958 0.82 -1.6
332,497 + GFF2958 0.85 +0.7
332,498 - GFF2958 0.85 -2.2
332,563 + -0.6
332,563 + -1.0
332,564 - -0.1
332,612 + -0.2
332,612 + +0.3
332,612 + +0.1
332,613 - +0.4
332,613 - +0.6
332,629 + +0.6
332,630 - -0.5
332,630 - +0.5
332,630 - -0.5
332,630 - -0.2
332,824 - GFF2959 0.21 -0.2
332,839 + GFF2959 0.22 -0.2
332,839 + GFF2959 0.22 -0.1
332,839 + GFF2959 0.22 +1.9
332,840 - GFF2959 0.22 -1.1
332,840 - GFF2959 0.22 -0.2
332,840 - GFF2959 0.22 +0.1

Or see this region's nucleotide sequence