Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3273 and GFF3274 overlap by 8 nucleotides GFF3274 and GFF3275 are separated by 149 nucleotides GFF3275 and GFF3276 are separated by 190 nucleotides
GFF3273 - Carbon starvation protein A, at 156,757 to 158,829
GFF3273
GFF3274 - COG2879, Hypothetical small protein yjiX, at 158,822 to 159,043
GFF3274
GFF3275 - Urea ABC transporter, substrate binding protein UrtA, at 159,193 to 160,482
GFF3275
GFF3276 - Urea ABC transporter, permease protein UrtB, at 160,673 to 162,232
GFF3276
Position (kb) 159
160
161 Strain fitness (log2 ratio) -1
0
1 at 158.332 kb on + strand, within GFF3273 at 158.342 kb on - strand, within GFF3273 at 158.729 kb on - strand at 158.879 kb on + strand, within GFF3274 at 158.922 kb on - strand, within GFF3274 at 158.931 kb on - strand, within GFF3274 at 158.931 kb on - strand, within GFF3274 at 158.931 kb on - strand, within GFF3274 at 158.978 kb on + strand, within GFF3274 at 158.978 kb on + strand, within GFF3274 at 158.979 kb on - strand, within GFF3274 at 158.979 kb on - strand, within GFF3274 at 158.979 kb on - strand, within GFF3274 at 159.072 kb on + strand at 159.073 kb on - strand at 159.073 kb on - strand at 159.076 kb on + strand at 159.097 kb on + strand at 159.098 kb on - strand at 159.098 kb on - strand at 159.592 kb on + strand, within GFF3275 at 159.638 kb on - strand, within GFF3275 at 159.739 kb on + strand, within GFF3275 at 159.739 kb on + strand, within GFF3275 at 159.740 kb on - strand, within GFF3275 at 159.824 kb on - strand, within GFF3275 at 160.069 kb on + strand, within GFF3275 at 160.126 kb on + strand, within GFF3275 at 160.126 kb on + strand, within GFF3275 at 160.196 kb on - strand, within GFF3275 at 160.435 kb on + strand at 160.480 kb on + strand at 160.480 kb on + strand at 160.636 kb on + strand at 160.636 kb on + strand at 161.418 kb on - strand, within GFF3276
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 158,332 + GFF3273 0.76 +0.4 158,342 - GFF3273 0.76 +1.4 158,729 - -0.2 158,879 + GFF3274 0.26 +0.8 158,922 - GFF3274 0.45 +0.5 158,931 - GFF3274 0.49 +0.8 158,931 - GFF3274 0.49 -0.1 158,931 - GFF3274 0.49 +0.0 158,978 + GFF3274 0.70 -0.0 158,978 + GFF3274 0.70 +0.1 158,979 - GFF3274 0.71 -0.0 158,979 - GFF3274 0.71 +1.2 158,979 - GFF3274 0.71 +0.2 159,072 + +0.1 159,073 - +0.2 159,073 - +0.9 159,076 + +0.6 159,097 + -0.4 159,098 - +0.8 159,098 - +0.4 159,592 + GFF3275 0.31 -0.5 159,638 - GFF3275 0.34 -1.0 159,739 + GFF3275 0.42 -0.4 159,739 + GFF3275 0.42 +0.4 159,740 - GFF3275 0.42 -0.6 159,824 - GFF3275 0.49 +0.2 160,069 + GFF3275 0.68 -0.1 160,126 + GFF3275 0.72 -0.2 160,126 + GFF3275 0.72 -0.3 160,196 - GFF3275 0.78 -0.4 160,435 + -0.6 160,480 + -1.7 160,480 + +0.1 160,636 + -0.1 160,636 + -0.1 161,418 - GFF3276 0.48 +0.4
Or see this region's nucleotide sequence