Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4089

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,001,676	+		GFF4088	0.14	+0.4
1,001,676	+		GFF4088	0.14	+0.2
1,001,676	+		GFF4088	0.14	-0.2
1,001,676	+		GFF4088	0.14	+0.1
1,001,745	+		GFF4088	0.20	+0.5
1,001,745	+		GFF4088	0.20	+0.2
1,001,746	-		GFF4088	0.20	-1.6
1,001,746	-		GFF4088	0.20	-0.8
1,001,826	+		GFF4088	0.28	-0.2
1,001,826	+		GFF4088	0.28	-0.9
1,002,247	-		GFF4088	0.65	+0.3
1,002,646	-				-0.1
1,002,702	+				+0.7
1,002,718	-				-0.4
1,002,718	-				+0.1
1,003,030	-		GFF4089	0.49	-1.6
1,003,030	-		GFF4089	0.49	-0.7
1,003,471	+		GFF4090	0.16	+0.3
1,003,472	-		GFF4090	0.16	-0.1
1,003,472	-		GFF4090	0.16	-0.9
1,003,698	-				+1.9
1,004,088	+		GFF4091	0.50	+0.5
1,004,089	-		GFF4091	0.50	+0.4
1,004,323	-		GFF4091	0.79	-0.5