Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06528

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06526 and MPMX19_06527 overlap by 4 nucleotidesMPMX19_06527 and MPMX19_06528 overlap by 4 nucleotidesMPMX19_06528 and MPMX19_06529 are separated by 37 nucleotidesMPMX19_06529 and MPMX19_06530 overlap by 4 nucleotides MPMX19_06526: MPMX19_06526 - Putative aliphatic sulfonates transport permease protein SsuC, at 313,538 to 314,431 _06526 MPMX19_06527: MPMX19_06527 - Bicarbonate transport ATP-binding protein CmpD, at 314,428 to 315,225 _06527 MPMX19_06528: MPMX19_06528 - hypothetical protein, at 315,222 to 316,268 _06528 MPMX19_06529: MPMX19_06529 - Choline trimethylamine-lyase activating enzyme, at 316,306 to 316,647 _06529 MPMX19_06530: MPMX19_06530 - hypothetical protein, at 316,644 to 318,299 _06530 Position (kb) 315 316 317Strain fitness (log2 ratio) -2 -1 0 1 2at 314.338 kb on + strand, within MPMX19_06526at 314.504 kb on + strandat 314.504 kb on + strandat 314.505 kb on - strandat 314.505 kb on - strandat 314.964 kb on - strand, within MPMX19_06527at 314.964 kb on - strand, within MPMX19_06527at 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.183 kb on - strandat 315.776 kb on - strand, within MPMX19_06528at 315.776 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.901 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 316.193 kb on + strandat 316.194 kb on - strandat 316.194 kb on - strandat 316.194 kb on - strandat 316.358 kb on + strand, within MPMX19_06529at 316.359 kb on - strand, within MPMX19_06529at 316.840 kb on + strand, within MPMX19_06530at 316.841 kb on - strand, within MPMX19_06530at 316.841 kb on - strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 317.000 kb on - strand, within MPMX19_06530

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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314,338 + MPMX19_06526 0.89 +1.2
314,504 + -1.2
314,504 + -1.6
314,505 - -0.5
314,505 - -1.2
314,964 - MPMX19_06527 0.67 +0.3
314,964 - MPMX19_06527 0.67 +0.2
315,183 - -0.2
315,183 - +1.2
315,183 - +0.3
315,183 - +0.5
315,183 - +0.8
315,183 - -0.3
315,183 - -0.2
315,183 - -0.5
315,776 - MPMX19_06528 0.53 -0.0
315,776 - MPMX19_06528 0.53 -2.5
315,789 - MPMX19_06528 0.54 +0.6
315,789 - MPMX19_06528 0.54 -0.4
315,789 - MPMX19_06528 0.54 -0.4
315,789 - MPMX19_06528 0.54 -0.3
315,789 - MPMX19_06528 0.54 -0.5
315,789 - MPMX19_06528 0.54 +0.7
315,789 - MPMX19_06528 0.54 -0.4
315,789 - MPMX19_06528 0.54 +0.1
315,789 - MPMX19_06528 0.54 -0.7
315,789 - MPMX19_06528 0.54 +0.2
315,789 - MPMX19_06528 0.54 -0.4
315,789 - MPMX19_06528 0.54 +0.3
315,789 - MPMX19_06528 0.54 +1.7
315,789 - MPMX19_06528 0.54 +0.7
315,789 - MPMX19_06528 0.54 +0.4
315,789 - MPMX19_06528 0.54 +0.2
315,789 - MPMX19_06528 0.54 +0.7
315,789 - MPMX19_06528 0.54 +0.2
315,789 - MPMX19_06528 0.54 +0.2
315,789 - MPMX19_06528 0.54 -0.7
315,789 - MPMX19_06528 0.54 -0.3
315,789 - MPMX19_06528 0.54 -0.9
315,789 - MPMX19_06528 0.54 +0.4
315,789 - MPMX19_06528 0.54 +0.7
315,789 - MPMX19_06528 0.54 +0.8
315,789 - MPMX19_06528 0.54 +1.0
315,789 - MPMX19_06528 0.54 +1.3
315,789 - MPMX19_06528 0.54 -1.3
315,789 - MPMX19_06528 0.54 +0.7
315,789 - MPMX19_06528 0.54 +1.5
315,789 - MPMX19_06528 0.54 +0.2
315,789 - MPMX19_06528 0.54 -0.2
315,789 - MPMX19_06528 0.54 +0.6
315,791 - MPMX19_06528 0.54 -1.1
315,791 - MPMX19_06528 0.54 +0.1
315,791 - MPMX19_06528 0.54 -1.9
315,791 - MPMX19_06528 0.54 +0.2
315,791 - MPMX19_06528 0.54 +0.5
315,791 - MPMX19_06528 0.54 +1.9
315,791 - MPMX19_06528 0.54 -0.1
315,791 - MPMX19_06528 0.54 +1.5
315,791 - MPMX19_06528 0.54 -0.1
315,791 - MPMX19_06528 0.54 -1.6
315,791 - MPMX19_06528 0.54 +0.7
315,791 - MPMX19_06528 0.54 +0.3
315,901 + MPMX19_06528 0.65 -0.1
315,910 + MPMX19_06528 0.66 -0.1
315,910 + MPMX19_06528 0.66 -1.3
315,910 + MPMX19_06528 0.66 -0.4
315,910 + MPMX19_06528 0.66 -0.3
315,910 + MPMX19_06528 0.66 -0.2
315,910 + MPMX19_06528 0.66 +0.2
315,910 + MPMX19_06528 0.66 +0.9
315,910 + MPMX19_06528 0.66 -1.8
316,193 + -0.6
316,194 - +1.3
316,194 - +0.0
316,194 - -0.5
316,358 + MPMX19_06529 0.15 +0.8
316,359 - MPMX19_06529 0.15 -0.5
316,840 + MPMX19_06530 0.12 -0.5
316,841 - MPMX19_06530 0.12 +0.0
316,841 - MPMX19_06530 0.12 -2.7
316,987 + MPMX19_06530 0.21 -0.4
316,987 + MPMX19_06530 0.21 +0.4
316,987 + MPMX19_06530 0.21 +1.9
316,987 + MPMX19_06530 0.21 -0.4
316,987 + MPMX19_06530 0.21 +0.8
316,987 + MPMX19_06530 0.21 -0.2
316,987 + MPMX19_06530 0.21 -0.4
316,987 + MPMX19_06530 0.21 +0.3
316,987 + MPMX19_06530 0.21 +0.5
316,988 - MPMX19_06530 0.21 +0.1
316,988 - MPMX19_06530 0.21 -0.3
316,988 - MPMX19_06530 0.21 -0.2
316,988 - MPMX19_06530 0.21 -1.3
316,988 - MPMX19_06530 0.21 -0.1
316,988 - MPMX19_06530 0.21 +0.1
316,988 - MPMX19_06530 0.21 -1.0
317,000 - MPMX19_06530 0.21 +0.9

Or see this region's nucleotide sequence