Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06143 and MPMX19_06144 are separated by 86 nucleotides MPMX19_06144 and MPMX19_06145 are separated by 12 nucleotides MPMX19_06145 and MPMX19_06146 are separated by 246 nucleotides MPMX19_06146 and MPMX19_06147 are separated by 4 nucleotides MPMX19_06147 and MPMX19_06148 are separated by 22 nucleotides
MPMX19_06143: MPMX19_06143 - Endonuclease III, at 330,732 to 331,412
_06143
MPMX19_06144: MPMX19_06144 - hypothetical protein, at 331,499 to 331,729
_06144
MPMX19_06145: MPMX19_06145 - hypothetical protein, at 331,742 to 332,728
_06145
MPMX19_06146: MPMX19_06146 - hypothetical protein, at 332,975 to 333,265
_06146
MPMX19_06147: MPMX19_06147 - hypothetical protein, at 333,270 to 333,698
_06147
MPMX19_06148: MPMX19_06148 - Beta-glucosidase A, at 333,721 to 335,208
_06148
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.849 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.221 kb on + strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.222 kb on - strand, within MPMX19_06143 at 331.284 kb on + strand, within MPMX19_06143 at 331.284 kb on + strand, within MPMX19_06143 at 331.284 kb on + strand, within MPMX19_06143 at 331.459 kb on + strand at 331.459 kb on + strand at 331.459 kb on + strand at 331.460 kb on - strand at 331.460 kb on - strand at 331.460 kb on - strand at 331.508 kb on + strand at 331.508 kb on + strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.509 kb on - strand at 331.568 kb on + strand, within MPMX19_06144 at 331.569 kb on - strand, within MPMX19_06144 at 331.569 kb on - strand, within MPMX19_06144 at 331.569 kb on - strand, within MPMX19_06144 at 332.797 kb on + strand at 332.797 kb on + strand at 332.797 kb on + strand at 332.797 kb on + strand at 332.797 kb on + strand at 332.797 kb on + strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.798 kb on - strand at 332.808 kb on + strand at 332.808 kb on + strand at 332.808 kb on + strand at 332.809 kb on - strand at 332.935 kb on - strand at 333.122 kb on + strand, within MPMX19_06146 at 333.122 kb on + strand, within MPMX19_06146 at 333.122 kb on + strand, within MPMX19_06146 at 333.122 kb on + strand, within MPMX19_06146 at 333.122 kb on + strand, within MPMX19_06146 at 333.123 kb on - strand, within MPMX19_06146 at 333.123 kb on - strand, within MPMX19_06146 at 333.123 kb on - strand, within MPMX19_06146 at 333.251 kb on + strand at 333.251 kb on + strand at 333.251 kb on + strand at 333.252 kb on - strand at 333.252 kb on - strand at 333.252 kb on - strand at 333.252 kb on - strand at 333.271 kb on + strand at 333.271 kb on + strand at 333.271 kb on + strand at 333.271 kb on + strand at 333.271 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.295 kb on + strand at 333.296 kb on - strand at 333.296 kb on - strand at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.340 kb on + strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.341 kb on - strand, within MPMX19_06147 at 333.472 kb on + strand, within MPMX19_06147 at 333.472 kb on + strand, within MPMX19_06147 at 333.472 kb on + strand, within MPMX19_06147 at 333.472 kb on + strand, within MPMX19_06147 at 333.473 kb on - strand, within MPMX19_06147 at 333.473 kb on - strand, within MPMX19_06147 at 333.473 kb on - strand, within MPMX19_06147 at 333.511 kb on + strand, within MPMX19_06147 at 333.512 kb on - strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.529 kb on + strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.530 kb on - strand, within MPMX19_06147 at 333.553 kb on + strand, within MPMX19_06147 at 333.553 kb on + strand, within MPMX19_06147 at 333.553 kb on + strand, within MPMX19_06147 at 333.553 kb on + strand, within MPMX19_06147 at 333.554 kb on - strand, within MPMX19_06147 at 333.554 kb on - strand, within MPMX19_06147 at 333.709 kb on + strand at 333.709 kb on + strand at 333.710 kb on - strand at 333.710 kb on - strand at 333.710 kb on - strand at 333.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 330,849 + MPMX19_06143 0.17 -0.2 331,221 + MPMX19_06143 0.72 -1.1 331,221 + MPMX19_06143 0.72 +1.1 331,221 + MPMX19_06143 0.72 -0.5 331,221 + MPMX19_06143 0.72 +1.4 331,221 + MPMX19_06143 0.72 -0.2 331,221 + MPMX19_06143 0.72 -0.6 331,222 - MPMX19_06143 0.72 +0.3 331,222 - MPMX19_06143 0.72 +0.1 331,222 - MPMX19_06143 0.72 +0.1 331,222 - MPMX19_06143 0.72 -0.3 331,222 - MPMX19_06143 0.72 +0.3 331,222 - MPMX19_06143 0.72 -0.4 331,222 - MPMX19_06143 0.72 +1.4 331,222 - MPMX19_06143 0.72 -0.2 331,222 - MPMX19_06143 0.72 +0.9 331,222 - MPMX19_06143 0.72 +0.2 331,222 - MPMX19_06143 0.72 +0.1 331,222 - MPMX19_06143 0.72 +0.6 331,222 - MPMX19_06143 0.72 +0.4 331,222 - MPMX19_06143 0.72 -0.8 331,222 - MPMX19_06143 0.72 +0.3 331,222 - MPMX19_06143 0.72 +0.3 331,222 - MPMX19_06143 0.72 -0.7 331,284 + MPMX19_06143 0.81 +0.6 331,284 + MPMX19_06143 0.81 -0.4 331,284 + MPMX19_06143 0.81 +0.3 331,459 + -0.3 331,459 + -1.7 331,459 + +0.1 331,460 - +0.3 331,460 - +1.6 331,460 - -2.5 331,508 + +0.5 331,508 + -1.9 331,509 - -0.6 331,509 - -0.7 331,509 - -0.4 331,509 - -2.9 331,509 - -0.5 331,568 + MPMX19_06144 0.30 -0.5 331,569 - MPMX19_06144 0.30 -0.5 331,569 - MPMX19_06144 0.30 -0.5 331,569 - MPMX19_06144 0.30 -1.5 332,797 + -2.6 332,797 + +0.1 332,797 + -0.1 332,797 + -1.7 332,797 + -1.5 332,797 + -1.0 332,798 - +0.4 332,798 - -1.1 332,798 - -0.5 332,798 - +0.8 332,798 - +0.3 332,798 - -1.3 332,798 - -0.3 332,798 - -0.9 332,798 - -0.6 332,808 + +1.1 332,808 + +0.9 332,808 + +0.5 332,809 - -0.5 332,935 - -0.1 333,122 + MPMX19_06146 0.51 -1.1 333,122 + MPMX19_06146 0.51 -1.7 333,122 + MPMX19_06146 0.51 -0.9 333,122 + MPMX19_06146 0.51 -1.8 333,122 + MPMX19_06146 0.51 -1.0 333,123 - MPMX19_06146 0.51 +0.6 333,123 - MPMX19_06146 0.51 -0.4 333,123 - MPMX19_06146 0.51 -0.7 333,251 + +0.3 333,251 + +1.4 333,251 + -0.2 333,252 - +0.5 333,252 - -0.2 333,252 - -0.9 333,252 - -0.7 333,271 + -0.9 333,271 + -2.7 333,271 + -0.1 333,271 + +1.2 333,271 + -1.8 333,295 + -0.2 333,295 + -1.7 333,295 + -0.7 333,295 + +0.2 333,295 + +1.4 333,295 + +0.6 333,295 + +0.1 333,295 + +0.4 333,295 + -1.6 333,295 + +0.2 333,296 - -0.1 333,296 - -1.2 333,340 + MPMX19_06147 0.16 -1.7 333,340 + MPMX19_06147 0.16 -0.4 333,340 + MPMX19_06147 0.16 -0.5 333,340 + MPMX19_06147 0.16 +0.1 333,340 + MPMX19_06147 0.16 +0.7 333,340 + MPMX19_06147 0.16 -1.1 333,340 + MPMX19_06147 0.16 +1.1 333,340 + MPMX19_06147 0.16 +0.1 333,340 + MPMX19_06147 0.16 +0.9 333,340 + MPMX19_06147 0.16 -0.3 333,340 + MPMX19_06147 0.16 -0.3 333,340 + MPMX19_06147 0.16 -0.4 333,341 - MPMX19_06147 0.17 +1.1 333,341 - MPMX19_06147 0.17 -0.8 333,341 - MPMX19_06147 0.17 -0.7 333,341 - MPMX19_06147 0.17 +1.1 333,341 - MPMX19_06147 0.17 +0.1 333,341 - MPMX19_06147 0.17 -0.9 333,341 - MPMX19_06147 0.17 -0.5 333,341 - MPMX19_06147 0.17 +0.1 333,341 - MPMX19_06147 0.17 -0.7 333,341 - MPMX19_06147 0.17 -0.7 333,341 - MPMX19_06147 0.17 +0.5 333,341 - MPMX19_06147 0.17 +0.2 333,341 - MPMX19_06147 0.17 -0.7 333,341 - MPMX19_06147 0.17 -1.0 333,341 - MPMX19_06147 0.17 +0.1 333,341 - MPMX19_06147 0.17 -0.2 333,341 - MPMX19_06147 0.17 -0.6 333,341 - MPMX19_06147 0.17 -0.5 333,341 - MPMX19_06147 0.17 +1.9 333,472 + MPMX19_06147 0.47 -0.2 333,472 + MPMX19_06147 0.47 -0.5 333,472 + MPMX19_06147 0.47 +0.1 333,472 + MPMX19_06147 0.47 -2.4 333,473 - MPMX19_06147 0.47 -0.9 333,473 - MPMX19_06147 0.47 -0.2 333,473 - MPMX19_06147 0.47 -0.6 333,511 + MPMX19_06147 0.56 -0.0 333,512 - MPMX19_06147 0.56 -0.8 333,529 + MPMX19_06147 0.60 -0.4 333,529 + MPMX19_06147 0.60 -1.8 333,529 + MPMX19_06147 0.60 -0.6 333,529 + MPMX19_06147 0.60 +0.7 333,529 + MPMX19_06147 0.60 +0.2 333,529 + MPMX19_06147 0.60 +1.4 333,529 + MPMX19_06147 0.60 -2.7 333,529 + MPMX19_06147 0.60 -2.7 333,530 - MPMX19_06147 0.61 -1.5 333,530 - MPMX19_06147 0.61 -1.8 333,530 - MPMX19_06147 0.61 -1.2 333,530 - MPMX19_06147 0.61 -1.2 333,530 - MPMX19_06147 0.61 +1.6 333,530 - MPMX19_06147 0.61 +0.1 333,530 - MPMX19_06147 0.61 -0.9 333,530 - MPMX19_06147 0.61 -0.6 333,553 + MPMX19_06147 0.66 -0.0 333,553 + MPMX19_06147 0.66 +0.3 333,553 + MPMX19_06147 0.66 +0.6 333,553 + MPMX19_06147 0.66 +0.9 333,554 - MPMX19_06147 0.66 -0.5 333,554 - MPMX19_06147 0.66 +0.1 333,709 + +0.3 333,709 + +0.4 333,710 - -0.4 333,710 - -0.4 333,710 - +0.1 333,710 - -1.0
Or see this region's nucleotide sequence