Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05651

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05649 and MPMX19_05650 are separated by 89 nucleotidesMPMX19_05650 and MPMX19_05651 are separated by 109 nucleotidesMPMX19_05651 and MPMX19_05652 are separated by 244 nucleotidesMPMX19_05652 and MPMX19_05653 are separated by 88 nucleotides MPMX19_05649: MPMX19_05649 - hypothetical protein, at 367,375 to 368,457 _05649 MPMX19_05650: MPMX19_05650 - Ribonuclease HII, at 368,547 to 369,212 _05650 MPMX19_05651: MPMX19_05651 - hypothetical protein, at 369,322 to 369,963 _05651 MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822 _05652 MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390 _05653 Position (kb) 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1at 368.674 kb on + strand, within MPMX19_05650at 368.674 kb on + strand, within MPMX19_05650at 368.674 kb on + strand, within MPMX19_05650at 368.674 kb on + strand, within MPMX19_05650at 368.675 kb on - strand, within MPMX19_05650at 368.683 kb on + strand, within MPMX19_05650at 368.684 kb on - strand, within MPMX19_05650at 368.684 kb on - strand, within MPMX19_05650at 368.736 kb on - strand, within MPMX19_05650at 368.736 kb on - strand, within MPMX19_05650at 368.736 kb on - strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.863 kb on + strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 368.864 kb on - strand, within MPMX19_05650at 369.245 kb on + strandat 369.245 kb on + strandat 369.245 kb on + strandat 369.246 kb on - strandat 369.246 kb on - strandat 369.270 kb on + strandat 369.335 kb on + strandat 369.335 kb on + strandat 369.336 kb on - strandat 369.336 kb on - strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.386 kb on + strandat 369.387 kb on - strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.541 kb on + strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.542 kb on - strand, within MPMX19_05651at 369.592 kb on + strand, within MPMX19_05651at 369.592 kb on + strand, within MPMX19_05651at 369.592 kb on + strand, within MPMX19_05651at 369.593 kb on - strand, within MPMX19_05651at 369.593 kb on - strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.622 kb on + strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.623 kb on - strand, within MPMX19_05651at 369.663 kb on + strand, within MPMX19_05651at 369.664 kb on - strand, within MPMX19_05651at 369.664 kb on - strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.850 kb on + strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.851 kb on - strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.853 kb on + strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.854 kb on - strand, within MPMX19_05651at 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.108 kb on - strandat 370.108 kb on - strandat 370.108 kb on - strandat 370.182 kb on + strandat 370.182 kb on + strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.203 kb on - strandat 370.538 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.557 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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368,674 + MPMX19_05650 0.19 -0.4
368,674 + MPMX19_05650 0.19 -0.6
368,674 + MPMX19_05650 0.19 -0.5
368,674 + MPMX19_05650 0.19 -0.7
368,675 - MPMX19_05650 0.19 +0.0
368,683 + MPMX19_05650 0.20 -1.2
368,684 - MPMX19_05650 0.21 +0.3
368,684 - MPMX19_05650 0.21 +1.0
368,736 - MPMX19_05650 0.28 +1.6
368,736 - MPMX19_05650 0.28 +0.3
368,736 - MPMX19_05650 0.28 -1.0
368,863 + MPMX19_05650 0.47 -0.9
368,863 + MPMX19_05650 0.47 -0.1
368,863 + MPMX19_05650 0.47 +0.3
368,863 + MPMX19_05650 0.47 -0.5
368,863 + MPMX19_05650 0.47 -0.2
368,863 + MPMX19_05650 0.47 +0.0
368,863 + MPMX19_05650 0.47 -0.9
368,864 - MPMX19_05650 0.48 -0.6
368,864 - MPMX19_05650 0.48 -0.2
368,864 - MPMX19_05650 0.48 -0.3
368,864 - MPMX19_05650 0.48 -0.1
369,245 + -0.3
369,245 + +0.7
369,245 + -0.3
369,246 - -0.7
369,246 - -1.3
369,270 + -0.6
369,335 + +0.1
369,335 + -2.1
369,336 - -0.0
369,336 - +0.1
369,386 + -0.6
369,386 + +0.6
369,386 + +0.8
369,386 + -1.0
369,386 + -1.0
369,387 - MPMX19_05651 0.10 -2.0
369,541 + MPMX19_05651 0.34 -0.3
369,541 + MPMX19_05651 0.34 +0.8
369,541 + MPMX19_05651 0.34 +0.6
369,541 + MPMX19_05651 0.34 -0.5
369,541 + MPMX19_05651 0.34 +0.1
369,541 + MPMX19_05651 0.34 +0.4
369,542 - MPMX19_05651 0.34 +0.0
369,542 - MPMX19_05651 0.34 -1.6
369,542 - MPMX19_05651 0.34 +0.8
369,542 - MPMX19_05651 0.34 -1.0
369,542 - MPMX19_05651 0.34 -1.1
369,542 - MPMX19_05651 0.34 -0.9
369,542 - MPMX19_05651 0.34 -0.2
369,542 - MPMX19_05651 0.34 +0.0
369,542 - MPMX19_05651 0.34 -0.1
369,542 - MPMX19_05651 0.34 +0.5
369,542 - MPMX19_05651 0.34 +0.9
369,592 + MPMX19_05651 0.42 -2.3
369,592 + MPMX19_05651 0.42 +1.1
369,592 + MPMX19_05651 0.42 +0.2
369,593 - MPMX19_05651 0.42 +1.3
369,593 - MPMX19_05651 0.42 +0.4
369,622 + MPMX19_05651 0.47 -0.9
369,622 + MPMX19_05651 0.47 -1.7
369,622 + MPMX19_05651 0.47 -1.0
369,622 + MPMX19_05651 0.47 +0.0
369,622 + MPMX19_05651 0.47 +0.4
369,622 + MPMX19_05651 0.47 -0.2
369,623 - MPMX19_05651 0.47 -3.0
369,623 - MPMX19_05651 0.47 +0.8
369,623 - MPMX19_05651 0.47 +0.5
369,623 - MPMX19_05651 0.47 -1.1
369,623 - MPMX19_05651 0.47 -0.6
369,623 - MPMX19_05651 0.47 -0.1
369,623 - MPMX19_05651 0.47 +0.3
369,623 - MPMX19_05651 0.47 +0.3
369,623 - MPMX19_05651 0.47 +0.0
369,623 - MPMX19_05651 0.47 +1.1
369,623 - MPMX19_05651 0.47 -0.6
369,623 - MPMX19_05651 0.47 +0.3
369,623 - MPMX19_05651 0.47 +0.3
369,663 + MPMX19_05651 0.53 -1.5
369,664 - MPMX19_05651 0.53 +0.0
369,664 - MPMX19_05651 0.53 -0.3
369,850 + MPMX19_05651 0.82 -2.0
369,850 + MPMX19_05651 0.82 -2.3
369,850 + MPMX19_05651 0.82 +0.0
369,850 + MPMX19_05651 0.82 +0.4
369,850 + MPMX19_05651 0.82 -0.1
369,850 + MPMX19_05651 0.82 +0.5
369,850 + MPMX19_05651 0.82 +0.0
369,850 + MPMX19_05651 0.82 -1.7
369,850 + MPMX19_05651 0.82 -0.0
369,850 + MPMX19_05651 0.82 +0.5
369,850 + MPMX19_05651 0.82 +0.4
369,850 + MPMX19_05651 0.82 +0.3
369,850 + MPMX19_05651 0.82 -0.9
369,851 - MPMX19_05651 0.82 -0.5
369,851 - MPMX19_05651 0.82 -0.3
369,851 - MPMX19_05651 0.82 -0.4
369,851 - MPMX19_05651 0.82 +0.5
369,851 - MPMX19_05651 0.82 -0.6
369,851 - MPMX19_05651 0.82 -0.8
369,851 - MPMX19_05651 0.82 -0.3
369,851 - MPMX19_05651 0.82 -1.4
369,851 - MPMX19_05651 0.82 -0.1
369,853 + MPMX19_05651 0.83 -0.7
369,853 + MPMX19_05651 0.83 +0.4
369,853 + MPMX19_05651 0.83 -1.6
369,853 + MPMX19_05651 0.83 +0.6
369,853 + MPMX19_05651 0.83 -0.0
369,853 + MPMX19_05651 0.83 -0.1
369,853 + MPMX19_05651 0.83 +0.1
369,853 + MPMX19_05651 0.83 -1.6
369,853 + MPMX19_05651 0.83 -1.8
369,853 + MPMX19_05651 0.83 +0.2
369,853 + MPMX19_05651 0.83 -0.6
369,853 + MPMX19_05651 0.83 +0.4
369,853 + MPMX19_05651 0.83 -0.3
369,853 + MPMX19_05651 0.83 +0.7
369,853 + MPMX19_05651 0.83 +1.0
369,853 + MPMX19_05651 0.83 +0.0
369,853 + MPMX19_05651 0.83 -0.7
369,853 + MPMX19_05651 0.83 -0.8
369,853 + MPMX19_05651 0.83 -1.0
369,853 + MPMX19_05651 0.83 -0.3
369,853 + MPMX19_05651 0.83 +1.4
369,853 + MPMX19_05651 0.83 -0.6
369,853 + MPMX19_05651 0.83 -0.8
369,853 + MPMX19_05651 0.83 +1.2
369,853 + MPMX19_05651 0.83 -0.7
369,853 + MPMX19_05651 0.83 +0.1
369,853 + MPMX19_05651 0.83 +0.4
369,853 + MPMX19_05651 0.83 -0.0
369,854 - MPMX19_05651 0.83 -0.3
369,854 - MPMX19_05651 0.83 +0.0
369,854 - MPMX19_05651 0.83 -0.7
369,854 - MPMX19_05651 0.83 -0.1
369,854 - MPMX19_05651 0.83 +0.6
369,854 - MPMX19_05651 0.83 -0.3
369,854 - MPMX19_05651 0.83 -1.4
369,854 - MPMX19_05651 0.83 -0.0
369,854 - MPMX19_05651 0.83 +0.3
369,854 - MPMX19_05651 0.83 -0.2
369,854 - MPMX19_05651 0.83 -0.6
369,854 - MPMX19_05651 0.83 +0.8
369,854 - MPMX19_05651 0.83 +1.1
369,854 - MPMX19_05651 0.83 -1.4
369,854 - MPMX19_05651 0.83 +0.7
369,854 - MPMX19_05651 0.83 -0.7
369,940 + -1.5
369,940 + -0.3
369,940 + +0.3
369,940 + +0.6
369,940 + -0.3
369,940 + -2.5
369,940 + -0.3
369,941 - -0.1
369,941 - +0.3
369,941 - -0.2
369,941 - +0.7
369,941 - -0.5
369,941 - -0.2
370,048 - -0.6
370,048 - +1.0
370,048 - -1.0
370,048 - -1.0
370,107 + +1.2
370,107 + +0.1
370,107 + +1.0
370,108 - -0.7
370,108 - -0.5
370,108 - -1.6
370,182 + +1.0
370,182 + -0.6
370,183 - -0.9
370,183 - -1.2
370,183 - -0.9
370,183 - -2.5
370,202 + +0.7
370,202 + -0.7
370,202 + +0.3
370,202 + +0.4
370,203 - -0.1
370,538 + MPMX19_05652 0.54 -0.2
370,556 + MPMX19_05652 0.57 -0.5
370,556 + MPMX19_05652 0.57 -0.1
370,556 + MPMX19_05652 0.57 -1.6
370,556 + MPMX19_05652 0.57 +0.2
370,557 - MPMX19_05652 0.57 +0.0
370,596 - MPMX19_05652 0.63 -0.4
370,596 - MPMX19_05652 0.63 +0.6
370,596 - MPMX19_05652 0.63 -0.4
370,596 - MPMX19_05652 0.63 -0.4

Or see this region's nucleotide sequence