Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04346 and MPMX19_04347 are separated by 398 nucleotides MPMX19_04347 and MPMX19_04348 are separated by 137 nucleotides MPMX19_04348 and MPMX19_04349 are separated by 91 nucleotides
MPMX19_04346: MPMX19_04346 - hypothetical protein, at 710,395 to 711,258
_04346
MPMX19_04347: MPMX19_04347 - ATP-dependent Clp protease proteolytic subunit, at 711,657 to 712,283
_04347
MPMX19_04348: MPMX19_04348 - hypothetical protein, at 712,421 to 712,858
_04348
MPMX19_04349: MPMX19_04349 - hypothetical protein, at 712,950 to 713,246
_04349
Position (kb) 711
712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 711.098 kb on + strand, within MPMX19_04346 at 711.099 kb on - strand, within MPMX19_04346 at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.303 kb on + strand at 711.303 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.371 kb on + strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.372 kb on - strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.543 kb on + strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.544 kb on - strand at 711.638 kb on - strand at 711.673 kb on - strand at 711.673 kb on - strand at 711.999 kb on + strand, within MPMX19_04347 at 711.999 kb on + strand, within MPMX19_04347 at 711.999 kb on + strand, within MPMX19_04347 at 711.999 kb on + strand, within MPMX19_04347 at 711.999 kb on + strand, within MPMX19_04347 at 711.999 kb on + strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.000 kb on - strand, within MPMX19_04347 at 712.206 kb on + strand, within MPMX19_04347 at 712.236 kb on + strand at 712.237 kb on - strand at 712.364 kb on + strand at 712.430 kb on + strand at 712.431 kb on - strand at 712.431 kb on - strand at 712.431 kb on - strand at 712.598 kb on + strand, within MPMX19_04348 at 712.598 kb on + strand, within MPMX19_04348 at 712.598 kb on + strand, within MPMX19_04348 at 712.598 kb on + strand, within MPMX19_04348 at 712.598 kb on + strand, within MPMX19_04348 at 712.598 kb on + strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.599 kb on - strand, within MPMX19_04348 at 712.646 kb on + strand, within MPMX19_04348 at 712.646 kb on + strand, within MPMX19_04348 at 712.647 kb on - strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.661 kb on + strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.662 kb on - strand, within MPMX19_04348 at 712.951 kb on + strand at 712.951 kb on + strand at 712.951 kb on + strand at 712.952 kb on - strand at 712.952 kb on - strand at 712.987 kb on + strand, within MPMX19_04349 at 713.255 kb on + strand at 713.255 kb on + strand at 713.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 710,834 + MPMX19_04346 0.51 -0.8 710,834 + MPMX19_04346 0.51 +0.5 710,834 + MPMX19_04346 0.51 -1.0 710,834 + MPMX19_04346 0.51 -0.7 710,834 + MPMX19_04346 0.51 +0.0 710,834 + MPMX19_04346 0.51 -0.9 710,834 + MPMX19_04346 0.51 -1.2 710,834 + MPMX19_04346 0.51 -0.3 710,834 + MPMX19_04346 0.51 -1.5 710,834 + MPMX19_04346 0.51 +0.4 710,834 + MPMX19_04346 0.51 -0.4 710,834 + MPMX19_04346 0.51 -0.7 710,834 + MPMX19_04346 0.51 -0.4 710,834 + MPMX19_04346 0.51 -0.4 710,834 + MPMX19_04346 0.51 -0.7 710,834 + MPMX19_04346 0.51 -1.2 710,834 + MPMX19_04346 0.51 +1.0 710,834 + MPMX19_04346 0.51 +0.8 710,834 + MPMX19_04346 0.51 +1.1 710,835 - MPMX19_04346 0.51 +0.4 710,835 - MPMX19_04346 0.51 -2.1 710,835 - MPMX19_04346 0.51 -0.4 710,835 - MPMX19_04346 0.51 -1.0 710,835 - MPMX19_04346 0.51 -0.4 710,835 - MPMX19_04346 0.51 +0.1 710,835 - MPMX19_04346 0.51 -0.4 710,835 - MPMX19_04346 0.51 -0.7 710,835 - MPMX19_04346 0.51 +1.8 710,835 - MPMX19_04346 0.51 -1.5 710,835 - MPMX19_04346 0.51 +0.2 710,835 - MPMX19_04346 0.51 -0.2 710,835 - MPMX19_04346 0.51 -1.2 710,835 - MPMX19_04346 0.51 -0.0 710,835 - MPMX19_04346 0.51 -0.3 710,835 - MPMX19_04346 0.51 +0.3 710,835 - MPMX19_04346 0.51 +0.7 710,835 - MPMX19_04346 0.51 -1.1 711,098 + MPMX19_04346 0.81 -1.0 711,099 - MPMX19_04346 0.81 +0.6 711,258 + +0.0 711,258 + -0.9 711,258 + +0.5 711,258 + -2.2 711,258 + +0.2 711,258 + -0.7 711,258 + -0.7 711,258 + +0.7 711,258 + -2.1 711,259 - -0.6 711,259 - +0.5 711,259 - -0.5 711,259 - -0.5 711,259 - +1.0 711,259 - -0.1 711,259 - -0.4 711,259 - -0.4 711,303 + -0.4 711,303 + +1.0 711,371 + -1.7 711,371 + +1.2 711,371 + +0.8 711,371 + -1.5 711,371 + +0.5 711,371 + -0.3 711,371 + -0.2 711,371 + -0.5 711,371 + -1.5 711,371 + -0.5 711,371 + -1.4 711,371 + -0.3 711,371 + +0.2 711,371 + -1.4 711,371 + +0.4 711,371 + -0.3 711,372 - -0.2 711,372 - -0.5 711,372 - +0.1 711,372 - -0.8 711,372 - -2.2 711,372 - -1.7 711,372 - +0.2 711,372 - -0.5 711,372 - +1.0 711,372 - -0.6 711,372 - +1.2 711,372 - -0.5 711,372 - -0.7 711,372 - -0.5 711,372 - +1.6 711,372 - -1.0 711,372 - +0.2 711,372 - +1.0 711,543 + -0.3 711,543 + -0.5 711,543 + -0.7 711,543 + -0.0 711,543 + -0.3 711,543 + -1.4 711,543 + -0.1 711,543 + +0.5 711,543 + -0.2 711,543 + -0.1 711,544 - -0.4 711,544 - +0.3 711,544 - +0.4 711,544 - +1.3 711,544 - +0.2 711,638 - -0.5 711,673 - -1.5 711,673 - +0.3 711,999 + MPMX19_04347 0.55 -0.1 711,999 + MPMX19_04347 0.55 +0.0 711,999 + MPMX19_04347 0.55 +0.3 711,999 + MPMX19_04347 0.55 +1.4 711,999 + MPMX19_04347 0.55 -1.1 711,999 + MPMX19_04347 0.55 -2.1 712,000 - MPMX19_04347 0.55 -0.7 712,000 - MPMX19_04347 0.55 -0.2 712,000 - MPMX19_04347 0.55 -0.4 712,000 - MPMX19_04347 0.55 +0.3 712,000 - MPMX19_04347 0.55 -0.4 712,000 - MPMX19_04347 0.55 -1.0 712,000 - MPMX19_04347 0.55 -2.8 712,000 - MPMX19_04347 0.55 -0.6 712,000 - MPMX19_04347 0.55 -1.8 712,000 - MPMX19_04347 0.55 -1.8 712,000 - MPMX19_04347 0.55 -0.2 712,000 - MPMX19_04347 0.55 -0.2 712,206 + MPMX19_04347 0.88 +0.5 712,236 + -0.8 712,237 - -0.5 712,364 + -0.1 712,430 + -1.0 712,431 - -0.7 712,431 - -1.3 712,431 - -0.2 712,598 + MPMX19_04348 0.40 -1.0 712,598 + MPMX19_04348 0.40 +1.6 712,598 + MPMX19_04348 0.40 +0.4 712,598 + MPMX19_04348 0.40 -0.2 712,598 + MPMX19_04348 0.40 +0.6 712,598 + MPMX19_04348 0.40 -0.4 712,599 - MPMX19_04348 0.41 -0.1 712,599 - MPMX19_04348 0.41 -1.7 712,599 - MPMX19_04348 0.41 -0.2 712,599 - MPMX19_04348 0.41 -1.1 712,599 - MPMX19_04348 0.41 +0.4 712,599 - MPMX19_04348 0.41 -0.6 712,599 - MPMX19_04348 0.41 -2.1 712,599 - MPMX19_04348 0.41 -0.6 712,646 + MPMX19_04348 0.51 -2.0 712,646 + MPMX19_04348 0.51 +0.9 712,647 - MPMX19_04348 0.52 -1.2 712,661 + MPMX19_04348 0.55 -0.0 712,661 + MPMX19_04348 0.55 -2.1 712,661 + MPMX19_04348 0.55 -0.4 712,661 + MPMX19_04348 0.55 -1.0 712,661 + MPMX19_04348 0.55 -0.4 712,661 + MPMX19_04348 0.55 +0.5 712,661 + MPMX19_04348 0.55 +0.0 712,661 + MPMX19_04348 0.55 +0.3 712,661 + MPMX19_04348 0.55 +0.5 712,662 - MPMX19_04348 0.55 +0.5 712,662 - MPMX19_04348 0.55 -0.2 712,662 - MPMX19_04348 0.55 -0.7 712,662 - MPMX19_04348 0.55 +0.2 712,662 - MPMX19_04348 0.55 -0.6 712,662 - MPMX19_04348 0.55 +0.1 712,662 - MPMX19_04348 0.55 -0.9 712,951 + -1.1 712,951 + +0.6 712,951 + -1.0 712,952 - -0.6 712,952 - +0.3 712,987 + MPMX19_04349 0.12 +0.3 713,255 + +1.0 713,255 + +2.0 713,255 + -0.8
Or see this region's nucleotide sequence