Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04127

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04125 and MPMX19_04126 are separated by 126 nucleotidesMPMX19_04126 and MPMX19_04127 are separated by 19 nucleotidesMPMX19_04127 and MPMX19_04128 are separated by 269 nucleotidesMPMX19_04128 and MPMX19_04129 overlap by 4 nucleotides MPMX19_04125: MPMX19_04125 - hypothetical protein, at 436,078 to 436,569 _04125 MPMX19_04126: MPMX19_04126 - hypothetical protein, at 436,696 to 437,424 _04126 MPMX19_04127: MPMX19_04127 - hypothetical protein, at 437,444 to 437,938 _04127 MPMX19_04128: MPMX19_04128 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 438,208 to 438,774 _04128 MPMX19_04129: MPMX19_04129 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 438,771 to 439,781 _04129 Position (kb) 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 436.588 kb on - strandat 436.602 kb on + strandat 436.603 kb on - strandat 436.603 kb on - strandat 436.603 kb on - strandat 436.604 kb on + strandat 436.605 kb on - strandat 436.605 kb on - strandat 436.605 kb on - strandat 436.675 kb on + strandat 436.675 kb on + strandat 436.676 kb on - strandat 436.676 kb on - strandat 436.677 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.757 kb on + strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.758 kb on - strandat 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.967 kb on + strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.968 kb on - strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.985 kb on + strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 436.986 kb on - strand, within MPMX19_04126at 437.333 kb on + strand, within MPMX19_04126at 437.817 kb on + strand, within MPMX19_04127at 437.818 kb on - strand, within MPMX19_04127at 437.818 kb on - strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.896 kb on + strandat 437.896 kb on + strandat 437.896 kb on + strandat 437.897 kb on - strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.298 kb on - strand, within MPMX19_04128at 438.298 kb on - strand, within MPMX19_04128at 438.298 kb on - strand, within MPMX19_04128at 438.298 kb on - strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.586 kb on + strand, within MPMX19_04128at 438.700 kb on + strand, within MPMX19_04128at 438.701 kb on - strand, within MPMX19_04128at 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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436,588 - -2.3
436,602 + -1.2
436,603 - +1.1
436,603 - -0.8
436,603 - -2.3
436,604 + -0.3
436,605 - -2.0
436,605 - +0.2
436,605 - -0.2
436,675 + -0.6
436,675 + +1.1
436,676 - -0.5
436,676 - -0.4
436,677 + -0.4
436,757 + -0.0
436,757 + -2.5
436,757 + -0.8
436,757 + -1.3
436,758 - -0.5
436,758 - -2.4
436,758 - -0.6
436,758 - -1.0
436,758 - +1.0
436,967 + MPMX19_04126 0.37 -0.6
436,967 + MPMX19_04126 0.37 -0.1
436,967 + MPMX19_04126 0.37 -0.5
436,967 + MPMX19_04126 0.37 +0.1
436,967 + MPMX19_04126 0.37 -1.0
436,968 - MPMX19_04126 0.37 +0.5
436,968 - MPMX19_04126 0.37 -1.5
436,968 - MPMX19_04126 0.37 -0.6
436,968 - MPMX19_04126 0.37 +1.7
436,968 - MPMX19_04126 0.37 -0.3
436,968 - MPMX19_04126 0.37 -0.2
436,968 - MPMX19_04126 0.37 -2.0
436,968 - MPMX19_04126 0.37 +1.8
436,968 - MPMX19_04126 0.37 +0.5
436,985 + MPMX19_04126 0.40 +0.5
436,985 + MPMX19_04126 0.40 -1.2
436,985 + MPMX19_04126 0.40 +0.4
436,985 + MPMX19_04126 0.40 -1.0
436,985 + MPMX19_04126 0.40 +0.5
436,985 + MPMX19_04126 0.40 -0.3
436,985 + MPMX19_04126 0.40 -0.5
436,985 + MPMX19_04126 0.40 -1.6
436,985 + MPMX19_04126 0.40 -0.6
436,985 + MPMX19_04126 0.40 +0.5
436,985 + MPMX19_04126 0.40 +0.3
436,985 + MPMX19_04126 0.40 +0.5
436,985 + MPMX19_04126 0.40 -0.2
436,985 + MPMX19_04126 0.40 +0.7
436,985 + MPMX19_04126 0.40 +0.3
436,985 + MPMX19_04126 0.40 +0.3
436,985 + MPMX19_04126 0.40 -1.9
436,985 + MPMX19_04126 0.40 -0.0
436,985 + MPMX19_04126 0.40 +0.1
436,985 + MPMX19_04126 0.40 -1.3
436,985 + MPMX19_04126 0.40 +0.4
436,985 + MPMX19_04126 0.40 -1.3
436,985 + MPMX19_04126 0.40 -0.9
436,985 + MPMX19_04126 0.40 +0.3
436,985 + MPMX19_04126 0.40 -0.8
436,985 + MPMX19_04126 0.40 -1.5
436,985 + MPMX19_04126 0.40 -1.8
436,985 + MPMX19_04126 0.40 -1.1
436,985 + MPMX19_04126 0.40 -0.5
436,985 + MPMX19_04126 0.40 -0.0
436,986 - MPMX19_04126 0.40 -0.3
436,986 - MPMX19_04126 0.40 -1.0
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 +0.6
436,986 - MPMX19_04126 0.40 +0.8
436,986 - MPMX19_04126 0.40 -0.5
436,986 - MPMX19_04126 0.40 -1.3
436,986 - MPMX19_04126 0.40 -1.8
436,986 - MPMX19_04126 0.40 +0.8
436,986 - MPMX19_04126 0.40 -1.5
436,986 - MPMX19_04126 0.40 -0.7
436,986 - MPMX19_04126 0.40 -1.5
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 -1.4
436,986 - MPMX19_04126 0.40 -0.8
436,986 - MPMX19_04126 0.40 -0.2
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 +0.4
436,986 - MPMX19_04126 0.40 +0.2
436,986 - MPMX19_04126 0.40 -0.5
436,986 - MPMX19_04126 0.40 +0.3
436,986 - MPMX19_04126 0.40 -1.5
436,986 - MPMX19_04126 0.40 +0.4
436,986 - MPMX19_04126 0.40 -1.1
436,986 - MPMX19_04126 0.40 -0.0
436,986 - MPMX19_04126 0.40 -0.1
436,986 - MPMX19_04126 0.40 -0.6
436,986 - MPMX19_04126 0.40 -0.5
436,986 - MPMX19_04126 0.40 +0.2
437,333 + MPMX19_04126 0.87 -2.8
437,817 + MPMX19_04127 0.75 -1.3
437,818 - MPMX19_04127 0.76 -3.0
437,818 - MPMX19_04127 0.76 -0.3
437,856 + MPMX19_04127 0.83 +0.5
437,856 + MPMX19_04127 0.83 -0.6
437,856 + MPMX19_04127 0.83 +0.3
437,856 + MPMX19_04127 0.83 -1.4
437,856 + MPMX19_04127 0.83 -1.3
437,856 + MPMX19_04127 0.83 -1.8
437,857 - MPMX19_04127 0.83 +0.0
437,857 - MPMX19_04127 0.83 -1.0
437,857 - MPMX19_04127 0.83 -1.0
437,857 - MPMX19_04127 0.83 -0.5
437,868 + MPMX19_04127 0.86 -0.8
437,868 + MPMX19_04127 0.86 +0.4
437,868 + MPMX19_04127 0.86 -0.3
437,868 + MPMX19_04127 0.86 -0.5
437,868 + MPMX19_04127 0.86 +0.3
437,868 + MPMX19_04127 0.86 +0.5
437,868 + MPMX19_04127 0.86 -0.3
437,869 - MPMX19_04127 0.86 -0.8
437,869 - MPMX19_04127 0.86 -0.6
437,869 - MPMX19_04127 0.86 +0.3
437,869 - MPMX19_04127 0.86 +0.7
437,869 - MPMX19_04127 0.86 -1.0
437,869 - MPMX19_04127 0.86 -0.9
437,869 - MPMX19_04127 0.86 -1.7
437,869 - MPMX19_04127 0.86 -0.8
437,869 - MPMX19_04127 0.86 -2.3
437,869 - MPMX19_04127 0.86 -0.9
437,896 + -0.8
437,896 + -0.4
437,896 + +0.7
437,897 - +0.3
438,158 + -1.0
438,158 + -0.4
438,158 + -0.8
438,158 + -1.5
438,158 + -0.8
438,158 + -0.0
438,158 + -1.3
438,158 + -0.0
438,158 + +1.3
438,158 + -2.3
438,158 + -0.8
438,159 - +0.5
438,159 - -0.7
438,159 - -0.1
438,159 - -0.5
438,159 - -0.9
438,159 - -0.6
438,159 - +0.3
438,159 - -0.2
438,159 - -0.0
438,159 - +0.8
438,298 - MPMX19_04128 0.16 -0.3
438,298 - MPMX19_04128 0.16 -0.8
438,298 - MPMX19_04128 0.16 +0.2
438,298 - MPMX19_04128 0.16 +0.0
438,373 + MPMX19_04128 0.29 -0.8
438,373 + MPMX19_04128 0.29 -1.9
438,373 + MPMX19_04128 0.29 +1.1
438,373 + MPMX19_04128 0.29 -1.3
438,373 + MPMX19_04128 0.29 -1.3
438,373 + MPMX19_04128 0.29 -0.5
438,374 - MPMX19_04128 0.29 -1.9
438,374 - MPMX19_04128 0.29 -0.9
438,374 - MPMX19_04128 0.29 +0.9
438,374 - MPMX19_04128 0.29 -0.7
438,374 - MPMX19_04128 0.29 +0.4
438,586 + MPMX19_04128 0.67 -0.6
438,700 + MPMX19_04128 0.87 -1.3
438,701 - MPMX19_04128 0.87 -1.7
438,786 + -0.1
438,786 + +0.5
438,786 + +1.5
438,786 + +0.3
438,786 + -0.0
438,786 + -0.3
438,786 + -0.2
438,787 - -0.7
438,787 - +0.5
438,787 - +0.5
438,787 - -0.1
438,787 - +0.5
438,787 - +0.4
438,787 - +0.1

Or see this region's nucleotide sequence