Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04038 and MPMX19_04039 are separated by 55 nucleotides MPMX19_04039 and MPMX19_04040 are separated by 8 nucleotides
MPMX19_04038: MPMX19_04038 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 337,585 to 339,432
_04038
MPMX19_04039: MPMX19_04039 - Inosose dehydratase, at 339,488 to 340,378
_04039
MPMX19_04040: MPMX19_04040 - Putative 3-oxopropanoate dehydrogenase, at 340,387 to 341,892
_04040
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.511 kb on + strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.512 kb on - strand, within MPMX19_04038 at 338.512 kb on - strand, within MPMX19_04038 at 338.512 kb on - strand, within MPMX19_04038 at 338.899 kb on + strand, within MPMX19_04038 at 338.899 kb on + strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.920 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.080 kb on - strand, within MPMX19_04038 at 339.080 kb on - strand, within MPMX19_04038 at 339.080 kb on - strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.135 kb on - strand, within MPMX19_04038 at 339.135 kb on - strand, within MPMX19_04038 at 339.135 kb on - strand, within MPMX19_04038 at 339.151 kb on + strand, within MPMX19_04038 at 339.151 kb on + strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.695 kb on + strand, within MPMX19_04039 at 339.695 kb on + strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 340.259 kb on + strand, within MPMX19_04039 at 340.260 kb on - strand, within MPMX19_04039 at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.367 kb on + strand at 340.368 kb on - strand at 340.368 kb on - strand at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.083 kb on + strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.084 kb on - strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.089 kb on + strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.090 kb on - strand, within MPMX19_04040 at 341.209 kb on + strand, within MPMX19_04040 at 341.210 kb on - strand, within MPMX19_04040 at 341.210 kb on - strand, within MPMX19_04040 at 341.210 kb on - strand, within MPMX19_04040 at 341.210 kb on - strand, within MPMX19_04040
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 338,511 + MPMX19_04038 0.50 +0.2 338,511 + MPMX19_04038 0.50 -1.7 338,511 + MPMX19_04038 0.50 -0.2 338,511 + MPMX19_04038 0.50 -1.1 338,512 - MPMX19_04038 0.50 +0.2 338,512 - MPMX19_04038 0.50 +0.7 338,512 - MPMX19_04038 0.50 +1.0 338,899 + MPMX19_04038 0.71 +0.4 338,899 + MPMX19_04038 0.71 -0.4 338,900 - MPMX19_04038 0.71 -0.3 338,900 - MPMX19_04038 0.71 +0.5 338,900 - MPMX19_04038 0.71 -0.6 338,900 - MPMX19_04038 0.71 -0.2 338,920 + MPMX19_04038 0.72 +0.6 338,998 + MPMX19_04038 0.76 -0.3 338,998 + MPMX19_04038 0.76 +0.5 338,998 + MPMX19_04038 0.76 -1.0 338,998 + MPMX19_04038 0.76 -1.1 338,998 + MPMX19_04038 0.76 +0.3 338,998 + MPMX19_04038 0.76 -1.3 338,998 + MPMX19_04038 0.76 -0.5 338,998 + MPMX19_04038 0.76 -0.4 338,998 + MPMX19_04038 0.76 -1.4 338,998 + MPMX19_04038 0.76 +0.5 338,998 + MPMX19_04038 0.76 +1.3 338,999 - MPMX19_04038 0.77 -0.0 338,999 - MPMX19_04038 0.77 -0.5 338,999 - MPMX19_04038 0.77 -0.1 338,999 - MPMX19_04038 0.77 -0.2 338,999 - MPMX19_04038 0.77 +1.2 338,999 - MPMX19_04038 0.77 -1.5 338,999 - MPMX19_04038 0.77 +0.7 338,999 - MPMX19_04038 0.77 -1.7 338,999 - MPMX19_04038 0.77 +1.4 338,999 - MPMX19_04038 0.77 +0.1 338,999 - MPMX19_04038 0.77 -0.1 338,999 - MPMX19_04038 0.77 +0.0 338,999 - MPMX19_04038 0.77 -0.1 338,999 - MPMX19_04038 0.77 -2.8 338,999 - MPMX19_04038 0.77 +0.6 338,999 - MPMX19_04038 0.77 -1.7 338,999 - MPMX19_04038 0.77 -2.1 339,079 + MPMX19_04038 0.81 -0.6 339,079 + MPMX19_04038 0.81 -1.2 339,079 + MPMX19_04038 0.81 -1.0 339,079 + MPMX19_04038 0.81 +1.4 339,079 + MPMX19_04038 0.81 -1.9 339,079 + MPMX19_04038 0.81 +0.0 339,079 + MPMX19_04038 0.81 -0.5 339,080 - MPMX19_04038 0.81 -0.4 339,080 - MPMX19_04038 0.81 -0.4 339,080 - MPMX19_04038 0.81 +0.2 339,134 + MPMX19_04038 0.84 +0.6 339,134 + MPMX19_04038 0.84 +0.5 339,134 + MPMX19_04038 0.84 +0.8 339,134 + MPMX19_04038 0.84 -0.3 339,135 - MPMX19_04038 0.84 -0.3 339,135 - MPMX19_04038 0.84 -0.4 339,135 - MPMX19_04038 0.84 -1.0 339,151 + MPMX19_04038 0.85 +0.2 339,151 + MPMX19_04038 0.85 +0.3 339,152 - MPMX19_04038 0.85 -0.1 339,152 - MPMX19_04038 0.85 -1.7 339,152 - MPMX19_04038 0.85 +0.0 339,152 - MPMX19_04038 0.85 -0.4 339,152 - MPMX19_04038 0.85 +0.6 339,283 + +0.5 339,283 + +0.3 339,283 + -1.7 339,283 + -0.8 339,283 + -0.9 339,283 + -0.4 339,283 + -1.0 339,283 + -1.6 339,283 + -1.7 339,283 + -0.2 339,283 + +0.1 339,284 - +0.1 339,284 - +0.6 339,284 - +0.4 339,284 - -0.1 339,284 - +0.2 339,284 - +1.0 339,284 - -0.6 339,284 - -1.4 339,284 - -0.6 339,284 - -1.1 339,284 - -0.9 339,284 - -1.0 339,284 - -0.9 339,284 - -0.4 339,284 - -1.4 339,284 - -0.4 339,284 - +0.4 339,400 + -0.1 339,400 + -1.6 339,400 + +0.1 339,400 + -0.3 339,400 + -0.8 339,400 + -0.3 339,400 + -0.5 339,401 - -0.2 339,401 - -1.6 339,401 - -1.0 339,401 - -1.4 339,401 - -0.5 339,535 + +0.3 339,535 + -2.2 339,535 + +0.4 339,535 + -0.4 339,535 + +1.0 339,535 + -0.9 339,535 + -0.7 339,536 - +0.4 339,536 - +0.7 339,536 - -1.0 339,536 - -0.5 339,536 - -1.0 339,536 - -0.6 339,536 - -0.9 339,536 - -0.9 339,536 - -2.0 339,695 + MPMX19_04039 0.23 -0.8 339,695 + MPMX19_04039 0.23 -1.7 339,696 - MPMX19_04039 0.23 +0.5 339,696 - MPMX19_04039 0.23 +0.8 339,696 - MPMX19_04039 0.23 +0.0 339,696 - MPMX19_04039 0.23 -1.4 339,911 + MPMX19_04039 0.47 -0.4 339,911 + MPMX19_04039 0.47 -0.5 339,911 + MPMX19_04039 0.47 -1.2 339,911 + MPMX19_04039 0.47 -0.0 339,912 - MPMX19_04039 0.48 +0.0 339,912 - MPMX19_04039 0.48 +0.9 339,912 - MPMX19_04039 0.48 -0.8 339,912 - MPMX19_04039 0.48 +1.0 339,912 - MPMX19_04039 0.48 +1.3 339,912 - MPMX19_04039 0.48 -1.8 339,941 + MPMX19_04039 0.51 +0.8 339,941 + MPMX19_04039 0.51 +1.6 339,941 + MPMX19_04039 0.51 +0.7 339,941 + MPMX19_04039 0.51 -1.6 339,947 + MPMX19_04039 0.52 -1.2 339,947 + MPMX19_04039 0.52 +1.0 339,947 + MPMX19_04039 0.52 -0.6 339,947 + MPMX19_04039 0.52 -1.6 339,947 + MPMX19_04039 0.52 -0.1 339,947 + MPMX19_04039 0.52 -0.0 339,948 - MPMX19_04039 0.52 +0.1 339,948 - MPMX19_04039 0.52 -0.9 339,948 - MPMX19_04039 0.52 +0.4 339,948 - MPMX19_04039 0.52 -0.2 339,948 - MPMX19_04039 0.52 +0.0 339,948 - MPMX19_04039 0.52 +0.0 339,948 - MPMX19_04039 0.52 -1.0 339,948 - MPMX19_04039 0.52 -1.1 340,259 + MPMX19_04039 0.87 -0.7 340,260 - MPMX19_04039 0.87 -0.1 340,322 + +0.1 340,322 + +0.0 340,322 + +0.2 340,322 + -2.3 340,322 + -1.3 340,322 + +0.3 340,322 + +0.6 340,322 + -0.3 340,322 + -0.7 340,322 + +2.6 340,322 + -1.0 340,322 + -0.2 340,322 + +0.8 340,322 + -0.4 340,323 - -1.3 340,323 - -0.7 340,323 - -2.1 340,323 - -0.4 340,323 - +0.4 340,323 - -1.0 340,323 - -0.4 340,323 - -0.4 340,323 - +0.2 340,323 - -0.3 340,323 - +0.5 340,367 + -0.3 340,368 - -0.4 340,368 - +1.2 341,083 + MPMX19_04040 0.46 -1.9 341,083 + MPMX19_04040 0.46 +0.5 341,083 + MPMX19_04040 0.46 +0.0 341,083 + MPMX19_04040 0.46 +0.5 341,083 + MPMX19_04040 0.46 -0.2 341,083 + MPMX19_04040 0.46 +2.1 341,083 + MPMX19_04040 0.46 -0.2 341,083 + MPMX19_04040 0.46 +1.5 341,083 + MPMX19_04040 0.46 +0.4 341,083 + MPMX19_04040 0.46 -0.7 341,083 + MPMX19_04040 0.46 +0.2 341,083 + MPMX19_04040 0.46 -1.1 341,083 + MPMX19_04040 0.46 +0.3 341,083 + MPMX19_04040 0.46 +0.3 341,083 + MPMX19_04040 0.46 -1.4 341,084 - MPMX19_04040 0.46 +0.8 341,084 - MPMX19_04040 0.46 -0.9 341,084 - MPMX19_04040 0.46 -1.8 341,084 - MPMX19_04040 0.46 +0.3 341,084 - MPMX19_04040 0.46 -1.9 341,084 - MPMX19_04040 0.46 +0.5 341,084 - MPMX19_04040 0.46 -0.9 341,084 - MPMX19_04040 0.46 -0.2 341,084 - MPMX19_04040 0.46 -0.4 341,084 - MPMX19_04040 0.46 -0.2 341,084 - MPMX19_04040 0.46 -0.6 341,084 - MPMX19_04040 0.46 -0.5 341,084 - MPMX19_04040 0.46 +0.4 341,089 + MPMX19_04040 0.47 -1.0 341,089 + MPMX19_04040 0.47 -1.2 341,089 + MPMX19_04040 0.47 -0.7 341,089 + MPMX19_04040 0.47 +1.2 341,089 + MPMX19_04040 0.47 -0.4 341,089 + MPMX19_04040 0.47 -1.0 341,089 + MPMX19_04040 0.47 -0.3 341,089 + MPMX19_04040 0.47 -0.3 341,089 + MPMX19_04040 0.47 -1.0 341,089 + MPMX19_04040 0.47 -2.7 341,089 + MPMX19_04040 0.47 +0.8 341,089 + MPMX19_04040 0.47 -0.6 341,089 + MPMX19_04040 0.47 -0.7 341,089 + MPMX19_04040 0.47 -0.1 341,089 + MPMX19_04040 0.47 -0.7 341,090 - MPMX19_04040 0.47 +0.0 341,090 - MPMX19_04040 0.47 +1.6 341,090 - MPMX19_04040 0.47 +1.4 341,090 - MPMX19_04040 0.47 +0.3 341,090 - MPMX19_04040 0.47 -0.8 341,090 - MPMX19_04040 0.47 +0.3 341,090 - MPMX19_04040 0.47 -1.4 341,090 - MPMX19_04040 0.47 -1.0 341,090 - MPMX19_04040 0.47 -0.1 341,090 - MPMX19_04040 0.47 -1.0 341,090 - MPMX19_04040 0.47 -1.2 341,090 - MPMX19_04040 0.47 -0.6 341,090 - MPMX19_04040 0.47 +1.6 341,090 - MPMX19_04040 0.47 -1.2 341,090 - MPMX19_04040 0.47 -1.3 341,090 - MPMX19_04040 0.47 -1.0 341,090 - MPMX19_04040 0.47 +1.4 341,090 - MPMX19_04040 0.47 -2.0 341,090 - MPMX19_04040 0.47 -1.6 341,090 - MPMX19_04040 0.47 +1.6 341,090 - MPMX19_04040 0.47 +1.0 341,209 + MPMX19_04040 0.55 -0.2 341,210 - MPMX19_04040 0.55 +0.4 341,210 - MPMX19_04040 0.55 -0.2 341,210 - MPMX19_04040 0.55 -1.7 341,210 - MPMX19_04040 0.55 -0.4
Or see this region's nucleotide sequence