Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03990

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03989 and MPMX19_03990 are separated by 369 nucleotidesMPMX19_03990 and MPMX19_03991 are separated by 50 nucleotides MPMX19_03989: MPMX19_03989 - Phosphate starvation-inducible protein PsiF, at 281,778 to 282,101 _03989 MPMX19_03990: MPMX19_03990 - Mannonate dehydratase, at 282,471 to 283,661 _03990 MPMX19_03991: MPMX19_03991 - Mannitol 2-dehydrogenase, at 283,712 to 285,235 _03991 Position (kb) 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 281.681 kb on + strandat 281.681 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.699 kb on + strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.700 kb on - strandat 281.701 kb on + strandat 281.701 kb on + strandat 281.702 kb on - strandat 281.702 kb on - strandat 281.702 kb on - strandat 281.702 kb on - strandat 281.712 kb on - strandat 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.933 kb on + strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 281.934 kb on - strand, within MPMX19_03989at 282.091 kb on + strandat 282.091 kb on + strandat 282.091 kb on + strandat 282.091 kb on + strandat 282.091 kb on + strandat 282.092 kb on - strandat 282.092 kb on - strandat 282.092 kb on - strandat 282.092 kb on - strandat 282.092 kb on - strandat 282.092 kb on - strandat 282.240 kb on + strandat 282.240 kb on + strandat 282.240 kb on + strandat 282.241 kb on - strandat 282.241 kb on - strandat 282.414 kb on + strandat 282.559 kb on + strandat 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.730 kb on + strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 282.731 kb on - strand, within MPMX19_03990at 283.063 kb on + strand, within MPMX19_03990at 283.063 kb on + strand, within MPMX19_03990at 283.063 kb on + strand, within MPMX19_03990at 283.063 kb on + strand, within MPMX19_03990at 283.063 kb on + strand, within MPMX19_03990at 283.063 kb on + strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.064 kb on - strand, within MPMX19_03990at 283.100 kb on - strand, within MPMX19_03990at 283.100 kb on - strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.213 kb on + strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.214 kb on - strand, within MPMX19_03990at 283.255 kb on + strand, within MPMX19_03990at 283.255 kb on + strand, within MPMX19_03990at 283.255 kb on + strand, within MPMX19_03990at 283.255 kb on + strand, within MPMX19_03990at 283.255 kb on + strand, within MPMX19_03990at 283.256 kb on - strand, within MPMX19_03990at 283.279 kb on + strand, within MPMX19_03990at 283.279 kb on + strand, within MPMX19_03990at 283.280 kb on - strand, within MPMX19_03990at 283.357 kb on + strand, within MPMX19_03990at 283.357 kb on + strand, within MPMX19_03990at 283.357 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.408 kb on + strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.409 kb on - strand, within MPMX19_03990at 283.933 kb on - strand, within MPMX19_03991at 283.933 kb on - strand, within MPMX19_03991at 283.933 kb on - strand, within MPMX19_03991at 284.142 kb on + strand, within MPMX19_03991at 284.142 kb on + strand, within MPMX19_03991at 284.143 kb on - strand, within MPMX19_03991at 284.143 kb on - strand, within MPMX19_03991at 284.143 kb on - strand, within MPMX19_03991at 284.143 kb on - strand, within MPMX19_03991at 284.280 kb on + strand, within MPMX19_03991at 284.280 kb on + strand, within MPMX19_03991at 284.280 kb on + strand, within MPMX19_03991at 284.280 kb on + strand, within MPMX19_03991at 284.280 kb on + strand, within MPMX19_03991at 284.280 kb on + strand, within MPMX19_03991at 284.281 kb on - strand, within MPMX19_03991at 284.281 kb on - strand, within MPMX19_03991at 284.553 kb on + strand, within MPMX19_03991at 284.553 kb on + strand, within MPMX19_03991at 284.553 kb on + strand, within MPMX19_03991at 284.553 kb on + strand, within MPMX19_03991at 284.553 kb on + strand, within MPMX19_03991at 284.554 kb on - strand, within MPMX19_03991at 284.554 kb on - strand, within MPMX19_03991at 284.554 kb on - strand, within MPMX19_03991at 284.554 kb on - strand, within MPMX19_03991at 284.554 kb on - strand, within MPMX19_03991at 284.586 kb on + strand, within MPMX19_03991

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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281,681 + -0.1
281,681 + +1.6
281,699 + -2.9
281,699 + +0.0
281,699 + +0.0
281,699 + -0.7
281,699 + +0.2
281,699 + +0.4
281,699 + -0.8
281,699 + +0.7
281,699 + -1.5
281,699 + +0.2
281,699 + -0.1
281,699 + -0.4
281,699 + -1.9
281,699 + -0.9
281,700 - +0.2
281,700 - +0.8
281,700 - -0.2
281,700 - +0.6
281,700 - -0.4
281,700 - -1.2
281,700 - +1.8
281,700 - -1.4
281,700 - -0.1
281,700 - -0.5
281,700 - +0.4
281,700 - +0.9
281,700 - -0.4
281,700 - -2.3
281,700 - -1.0
281,700 - +0.7
281,700 - -0.5
281,700 - +0.9
281,700 - +1.2
281,701 + -0.7
281,701 + +0.3
281,702 - -0.1
281,702 - +0.0
281,702 - +0.0
281,702 - -0.1
281,712 - -0.1
281,933 + MPMX19_03989 0.48 +1.0
281,933 + MPMX19_03989 0.48 -0.1
281,933 + MPMX19_03989 0.48 +0.4
281,933 + MPMX19_03989 0.48 +0.8
281,933 + MPMX19_03989 0.48 +0.3
281,933 + MPMX19_03989 0.48 +0.6
281,933 + MPMX19_03989 0.48 +0.3
281,933 + MPMX19_03989 0.48 -0.9
281,933 + MPMX19_03989 0.48 -2.1
281,934 - MPMX19_03989 0.48 -1.0
281,934 - MPMX19_03989 0.48 +0.1
281,934 - MPMX19_03989 0.48 -0.7
281,934 - MPMX19_03989 0.48 -0.9
281,934 - MPMX19_03989 0.48 -2.1
281,934 - MPMX19_03989 0.48 -0.7
281,934 - MPMX19_03989 0.48 -0.7
281,934 - MPMX19_03989 0.48 +0.8
281,934 - MPMX19_03989 0.48 -0.9
281,934 - MPMX19_03989 0.48 -0.4
281,934 - MPMX19_03989 0.48 -1.6
281,934 - MPMX19_03989 0.48 -0.9
281,934 - MPMX19_03989 0.48 +2.2
281,934 - MPMX19_03989 0.48 -0.6
281,934 - MPMX19_03989 0.48 -1.0
281,934 - MPMX19_03989 0.48 +0.5
282,091 + -0.0
282,091 + -1.3
282,091 + -0.7
282,091 + -0.9
282,091 + -0.9
282,092 - -0.6
282,092 - -0.7
282,092 - +0.2
282,092 - +0.9
282,092 - +0.8
282,092 - +0.2
282,240 + -0.3
282,240 + -0.2
282,240 + -1.1
282,241 - -2.0
282,241 - -0.3
282,414 + +0.2
282,559 + -0.3
282,730 + MPMX19_03990 0.22 +0.4
282,730 + MPMX19_03990 0.22 -0.4
282,730 + MPMX19_03990 0.22 -2.0
282,730 + MPMX19_03990 0.22 +0.2
282,730 + MPMX19_03990 0.22 -0.6
282,730 + MPMX19_03990 0.22 +0.7
282,730 + MPMX19_03990 0.22 +0.4
282,730 + MPMX19_03990 0.22 +0.2
282,730 + MPMX19_03990 0.22 -1.2
282,730 + MPMX19_03990 0.22 +0.1
282,730 + MPMX19_03990 0.22 +0.1
282,730 + MPMX19_03990 0.22 -1.5
282,730 + MPMX19_03990 0.22 -1.9
282,730 + MPMX19_03990 0.22 -2.2
282,730 + MPMX19_03990 0.22 +0.9
282,730 + MPMX19_03990 0.22 -1.0
282,731 - MPMX19_03990 0.22 +0.0
282,731 - MPMX19_03990 0.22 +0.6
282,731 - MPMX19_03990 0.22 -0.7
282,731 - MPMX19_03990 0.22 -0.6
282,731 - MPMX19_03990 0.22 +0.2
282,731 - MPMX19_03990 0.22 +0.8
282,731 - MPMX19_03990 0.22 -0.1
282,731 - MPMX19_03990 0.22 +0.9
283,063 + MPMX19_03990 0.50 +0.1
283,063 + MPMX19_03990 0.50 +0.4
283,063 + MPMX19_03990 0.50 +0.1
283,063 + MPMX19_03990 0.50 -0.5
283,063 + MPMX19_03990 0.50 +0.0
283,063 + MPMX19_03990 0.50 +1.2
283,064 - MPMX19_03990 0.50 +0.2
283,064 - MPMX19_03990 0.50 -1.0
283,064 - MPMX19_03990 0.50 +0.3
283,064 - MPMX19_03990 0.50 +1.6
283,064 - MPMX19_03990 0.50 -0.1
283,064 - MPMX19_03990 0.50 -1.5
283,064 - MPMX19_03990 0.50 +0.4
283,064 - MPMX19_03990 0.50 -0.5
283,100 - MPMX19_03990 0.53 -0.3
283,100 - MPMX19_03990 0.53 -1.2
283,213 + MPMX19_03990 0.62 -0.2
283,213 + MPMX19_03990 0.62 +0.4
283,213 + MPMX19_03990 0.62 -1.9
283,213 + MPMX19_03990 0.62 +1.6
283,213 + MPMX19_03990 0.62 +0.4
283,213 + MPMX19_03990 0.62 +1.7
283,213 + MPMX19_03990 0.62 -0.4
283,214 - MPMX19_03990 0.62 +0.4
283,214 - MPMX19_03990 0.62 -1.0
283,214 - MPMX19_03990 0.62 +0.0
283,214 - MPMX19_03990 0.62 -1.2
283,214 - MPMX19_03990 0.62 +0.2
283,214 - MPMX19_03990 0.62 +0.3
283,214 - MPMX19_03990 0.62 +1.6
283,214 - MPMX19_03990 0.62 -1.0
283,214 - MPMX19_03990 0.62 -1.1
283,214 - MPMX19_03990 0.62 -0.6
283,255 + MPMX19_03990 0.66 -0.3
283,255 + MPMX19_03990 0.66 +0.1
283,255 + MPMX19_03990 0.66 +1.6
283,255 + MPMX19_03990 0.66 -0.9
283,255 + MPMX19_03990 0.66 +0.0
283,256 - MPMX19_03990 0.66 -1.4
283,279 + MPMX19_03990 0.68 +0.1
283,279 + MPMX19_03990 0.68 +0.6
283,280 - MPMX19_03990 0.68 -1.4
283,357 + MPMX19_03990 0.74 +0.5
283,357 + MPMX19_03990 0.74 +0.7
283,357 + MPMX19_03990 0.74 +0.0
283,408 + MPMX19_03990 0.79 +0.9
283,408 + MPMX19_03990 0.79 -1.0
283,408 + MPMX19_03990 0.79 +0.0
283,408 + MPMX19_03990 0.79 -0.3
283,408 + MPMX19_03990 0.79 +0.6
283,408 + MPMX19_03990 0.79 +1.0
283,408 + MPMX19_03990 0.79 -1.3
283,408 + MPMX19_03990 0.79 +0.0
283,408 + MPMX19_03990 0.79 +0.6
283,408 + MPMX19_03990 0.79 -2.1
283,408 + MPMX19_03990 0.79 -0.2
283,408 + MPMX19_03990 0.79 -0.7
283,408 + MPMX19_03990 0.79 -0.7
283,408 + MPMX19_03990 0.79 -0.8
283,409 - MPMX19_03990 0.79 -0.2
283,409 - MPMX19_03990 0.79 -0.4
283,409 - MPMX19_03990 0.79 -0.5
283,409 - MPMX19_03990 0.79 +0.6
283,409 - MPMX19_03990 0.79 -0.5
283,409 - MPMX19_03990 0.79 -1.6
283,409 - MPMX19_03990 0.79 +0.0
283,409 - MPMX19_03990 0.79 -0.7
283,409 - MPMX19_03990 0.79 -2.1
283,409 - MPMX19_03990 0.79 +1.4
283,409 - MPMX19_03990 0.79 -0.2
283,409 - MPMX19_03990 0.79 +0.0
283,409 - MPMX19_03990 0.79 -1.4
283,409 - MPMX19_03990 0.79 -0.6
283,409 - MPMX19_03990 0.79 -0.0
283,409 - MPMX19_03990 0.79 +1.1
283,409 - MPMX19_03990 0.79 +0.6
283,409 - MPMX19_03990 0.79 -0.2
283,933 - MPMX19_03991 0.15 -0.9
283,933 - MPMX19_03991 0.15 -0.5
283,933 - MPMX19_03991 0.15 -1.2
284,142 + MPMX19_03991 0.28 +1.4
284,142 + MPMX19_03991 0.28 +0.3
284,143 - MPMX19_03991 0.28 -0.9
284,143 - MPMX19_03991 0.28 -0.3
284,143 - MPMX19_03991 0.28 -1.3
284,143 - MPMX19_03991 0.28 -0.6
284,280 + MPMX19_03991 0.37 -0.3
284,280 + MPMX19_03991 0.37 +0.2
284,280 + MPMX19_03991 0.37 -0.3
284,280 + MPMX19_03991 0.37 -0.6
284,280 + MPMX19_03991 0.37 +0.8
284,280 + MPMX19_03991 0.37 -2.9
284,281 - MPMX19_03991 0.37 -0.3
284,281 - MPMX19_03991 0.37 -1.2
284,553 + MPMX19_03991 0.55 -0.1
284,553 + MPMX19_03991 0.55 +0.2
284,553 + MPMX19_03991 0.55 -1.7
284,553 + MPMX19_03991 0.55 -0.2
284,553 + MPMX19_03991 0.55 -2.2
284,554 - MPMX19_03991 0.55 -0.3
284,554 - MPMX19_03991 0.55 -1.4
284,554 - MPMX19_03991 0.55 -0.1
284,554 - MPMX19_03991 0.55 +0.7
284,554 - MPMX19_03991 0.55 -2.0
284,586 + MPMX19_03991 0.57 +0.4

Or see this region's nucleotide sequence