Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03763 and MPMX19_03764 are separated by 391 nucleotides MPMX19_03764 and MPMX19_03765 are separated by 114 nucleotides MPMX19_03765 and MPMX19_03766 are separated by 141 nucleotides
MPMX19_03763: MPMX19_03763 - Nucleoid occlusion protein, at 2,149 to 3,003
_03763
MPMX19_03764: MPMX19_03764 - putative deoxycholate-binding periplasmic protein YgiS, at 3,395 to 4,918
_03764
MPMX19_03765: MPMX19_03765 - hypothetical protein, at 5,033 to 5,674
_03765
MPMX19_03766: MPMX19_03766 - Sensor histidine kinase RcsC, at 5,816 to 7,834
_03766
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3.012 kb on - strand at 3.012 kb on - strand at 3.012 kb on - strand at 3.012 kb on - strand at 3.076 kb on + strand at 3.188 kb on + strand at 3.189 kb on - strand at 3.320 kb on - strand at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.560 kb on + strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.561 kb on - strand, within MPMX19_03764 at 3.584 kb on - strand, within MPMX19_03764 at 4.406 kb on + strand, within MPMX19_03764 at 4.406 kb on + strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.407 kb on - strand, within MPMX19_03764 at 4.499 kb on + strand, within MPMX19_03764 at 4.500 kb on - strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.517 kb on + strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.518 kb on - strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.520 kb on + strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.521 kb on - strand, within MPMX19_03764 at 4.610 kb on + strand, within MPMX19_03764 at 4.611 kb on - strand, within MPMX19_03764 at 4.644 kb on - strand, within MPMX19_03764 at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.784 kb on + strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.785 kb on - strand at 4.786 kb on + strand at 4.786 kb on + strand at 4.786 kb on + strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.787 kb on - strand at 4.828 kb on - strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.847 kb on + strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 4.848 kb on - strand at 5.017 kb on + strand at 5.018 kb on - strand at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.397 kb on + strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.398 kb on - strand, within MPMX19_03765 at 5.406 kb on + strand, within MPMX19_03765 at 5.430 kb on + strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.431 kb on - strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.607 kb on + strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.608 kb on - strand, within MPMX19_03765 at 5.725 kb on - strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.756 kb on - strand at 5.760 kb on + strand at 5.760 kb on + strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.761 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.769 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.791 kb on - strand at 5.833 kb on + strand at 5.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 3,012 - -1.0 3,012 - -0.5 3,012 - +1.3 3,012 - +0.1 3,076 + -1.2 3,188 + -1.2 3,189 - -0.5 3,320 - -1.2 3,560 + MPMX19_03764 0.11 +1.3 3,560 + MPMX19_03764 0.11 -0.4 3,560 + MPMX19_03764 0.11 +0.1 3,560 + MPMX19_03764 0.11 -1.2 3,560 + MPMX19_03764 0.11 -2.1 3,560 + MPMX19_03764 0.11 -0.5 3,560 + MPMX19_03764 0.11 -0.4 3,560 + MPMX19_03764 0.11 +1.6 3,560 + MPMX19_03764 0.11 -2.3 3,560 + MPMX19_03764 0.11 -0.8 3,561 - MPMX19_03764 0.11 -1.0 3,561 - MPMX19_03764 0.11 -1.8 3,561 - MPMX19_03764 0.11 +0.1 3,561 - MPMX19_03764 0.11 +0.3 3,561 - MPMX19_03764 0.11 -0.9 3,561 - MPMX19_03764 0.11 -0.4 3,561 - MPMX19_03764 0.11 -0.4 3,561 - MPMX19_03764 0.11 +0.1 3,561 - MPMX19_03764 0.11 +0.4 3,561 - MPMX19_03764 0.11 -0.1 3,584 - MPMX19_03764 0.12 +0.8 4,406 + MPMX19_03764 0.66 -1.8 4,406 + MPMX19_03764 0.66 +0.8 4,407 - MPMX19_03764 0.66 -0.4 4,407 - MPMX19_03764 0.66 +1.1 4,407 - MPMX19_03764 0.66 -1.2 4,407 - MPMX19_03764 0.66 -1.7 4,499 + MPMX19_03764 0.72 -0.7 4,500 - MPMX19_03764 0.73 +1.0 4,517 + MPMX19_03764 0.74 -0.2 4,517 + MPMX19_03764 0.74 +1.3 4,517 + MPMX19_03764 0.74 -1.2 4,517 + MPMX19_03764 0.74 -0.8 4,518 - MPMX19_03764 0.74 +0.2 4,518 - MPMX19_03764 0.74 -0.8 4,518 - MPMX19_03764 0.74 -1.1 4,518 - MPMX19_03764 0.74 -1.8 4,518 - MPMX19_03764 0.74 +0.1 4,520 + MPMX19_03764 0.74 -0.4 4,520 + MPMX19_03764 0.74 +0.8 4,520 + MPMX19_03764 0.74 -0.4 4,520 + MPMX19_03764 0.74 -0.4 4,520 + MPMX19_03764 0.74 +0.3 4,520 + MPMX19_03764 0.74 +0.5 4,520 + MPMX19_03764 0.74 +0.0 4,521 - MPMX19_03764 0.74 -0.8 4,521 - MPMX19_03764 0.74 -0.0 4,521 - MPMX19_03764 0.74 -0.3 4,521 - MPMX19_03764 0.74 +0.2 4,521 - MPMX19_03764 0.74 -0.7 4,521 - MPMX19_03764 0.74 +2.9 4,521 - MPMX19_03764 0.74 +0.8 4,610 + MPMX19_03764 0.80 -0.4 4,611 - MPMX19_03764 0.80 +1.0 4,644 - MPMX19_03764 0.82 +0.3 4,784 + -0.2 4,784 + +0.1 4,784 + -0.5 4,784 + -2.2 4,784 + +1.1 4,784 + +0.1 4,784 + +0.6 4,784 + -0.2 4,784 + -0.7 4,784 + +1.4 4,785 - +1.3 4,785 - +0.3 4,785 - -1.8 4,785 - +0.8 4,785 - -0.8 4,785 - +0.1 4,785 - -0.2 4,785 - +0.6 4,785 - -2.2 4,785 - +0.2 4,785 - -0.7 4,785 - +0.1 4,785 - -1.4 4,785 - -0.8 4,786 + +0.2 4,786 + +0.1 4,786 + +0.8 4,787 - +1.1 4,787 - -0.4 4,787 - +1.2 4,787 - +0.6 4,787 - -0.8 4,787 - -0.9 4,828 - -0.4 4,847 + +1.2 4,847 + -0.3 4,847 + -2.2 4,847 + -1.1 4,847 + +0.5 4,847 + -1.8 4,847 + -0.8 4,847 + +0.1 4,847 + -1.2 4,847 + -0.4 4,847 + -1.1 4,848 - +1.1 4,848 - -0.8 4,848 - -0.9 4,848 - -0.8 4,848 - +0.6 4,848 - -1.9 4,848 - +0.1 4,848 - -0.8 5,017 + -1.1 5,018 - -1.4 5,397 + MPMX19_03765 0.57 -1.7 5,397 + MPMX19_03765 0.57 -0.4 5,397 + MPMX19_03765 0.57 -0.9 5,397 + MPMX19_03765 0.57 -1.9 5,397 + MPMX19_03765 0.57 +1.3 5,397 + MPMX19_03765 0.57 -0.9 5,398 - MPMX19_03765 0.57 -1.5 5,398 - MPMX19_03765 0.57 +0.8 5,398 - MPMX19_03765 0.57 +0.4 5,406 + MPMX19_03765 0.58 -0.6 5,430 + MPMX19_03765 0.62 +0.2 5,431 - MPMX19_03765 0.62 -0.2 5,431 - MPMX19_03765 0.62 +0.5 5,607 + MPMX19_03765 0.89 -0.4 5,607 + MPMX19_03765 0.89 -0.3 5,607 + MPMX19_03765 0.89 +0.8 5,607 + MPMX19_03765 0.89 -1.3 5,608 - MPMX19_03765 0.90 -0.3 5,608 - MPMX19_03765 0.90 -1.4 5,725 - -0.0 5,755 + +0.3 5,755 + +0.9 5,755 + -0.5 5,755 + -2.1 5,755 + +0.6 5,755 + -0.9 5,755 + +1.8 5,756 - -0.7 5,756 - +1.1 5,756 - +0.2 5,756 - -0.9 5,756 - +2.1 5,756 - +0.3 5,756 - +0.2 5,756 - +1.0 5,756 - +0.6 5,756 - -1.5 5,756 - -1.2 5,760 + -0.5 5,760 + +0.1 5,761 - +1.5 5,761 - +0.6 5,761 - -1.6 5,769 - -1.6 5,769 - -1.2 5,769 - -0.7 5,769 - -0.8 5,791 - +0.1 5,791 - -0.1 5,791 - +1.4 5,833 + +0.1 5,834 - +1.1
Or see this region's nucleotide sequence