Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03290

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03289 and MPMX19_03290 are separated by 403 nucleotidesMPMX19_03290 and MPMX19_03291 are separated by 41 nucleotidesMPMX19_03291 and MPMX19_03292 are separated by 114 nucleotides MPMX19_03289: MPMX19_03289 - Non-heme chloroperoxidase, at 636,302 to 637,330 _03289 MPMX19_03290: MPMX19_03290 - hypothetical protein, at 637,734 to 638,378 _03290 MPMX19_03291: MPMX19_03291 - hypothetical protein, at 638,420 to 639,148 _03291 MPMX19_03292: MPMX19_03292 - hypothetical protein, at 639,263 to 639,808 _03292 Position (kb) 637 638 639Strain fitness (log2 ratio) -2 -1 0 1 2at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.816 kb on + strand, within MPMX19_03289at 636.817 kb on - strand, within MPMX19_03289at 636.817 kb on - strand, within MPMX19_03289at 636.909 kb on + strand, within MPMX19_03289at 636.909 kb on + strand, within MPMX19_03289at 636.909 kb on + strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 636.910 kb on - strand, within MPMX19_03289at 637.092 kb on + strand, within MPMX19_03289at 637.092 kb on + strand, within MPMX19_03289at 637.093 kb on - strand, within MPMX19_03289at 637.093 kb on - strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.095 kb on + strand, within MPMX19_03289at 637.096 kb on - strand, within MPMX19_03289at 637.096 kb on - strand, within MPMX19_03289at 637.096 kb on - strand, within MPMX19_03289at 637.411 kb on + strandat 637.433 kb on - strandat 637.464 kb on + strandat 637.465 kb on - strandat 637.465 kb on - strandat 637.469 kb on - strandat 637.472 kb on - strandat 637.472 kb on - strandat 637.493 kb on + strandat 637.493 kb on + strandat 637.513 kb on + strandat 637.514 kb on - strandat 637.618 kb on + strandat 637.618 kb on + strandat 637.619 kb on - strandat 638.376 kb on + strandat 638.376 kb on + strandat 638.376 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.491 kb on + strandat 638.492 kb on - strandat 638.492 kb on - strandat 638.492 kb on - strandat 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.669 kb on + strand, within MPMX19_03291at 638.670 kb on - strand, within MPMX19_03291at 638.670 kb on - strand, within MPMX19_03291at 638.670 kb on - strand, within MPMX19_03291at 638.670 kb on - strand, within MPMX19_03291at 638.670 kb on - strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.675 kb on + strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.676 kb on - strand, within MPMX19_03291at 638.781 kb on - strand, within MPMX19_03291at 638.942 kb on + strand, within MPMX19_03291at 638.942 kb on + strand, within MPMX19_03291at 639.146 kb on + strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.147 kb on - strandat 639.254 kb on + strandat 639.254 kb on + strandat 639.254 kb on + strandat 639.254 kb on + strandat 639.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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636,816 + MPMX19_03289 0.50 -0.9
636,816 + MPMX19_03289 0.50 +0.4
636,816 + MPMX19_03289 0.50 -1.1
636,816 + MPMX19_03289 0.50 +1.1
636,816 + MPMX19_03289 0.50 +0.0
636,817 - MPMX19_03289 0.50 -0.4
636,817 - MPMX19_03289 0.50 -0.8
636,909 + MPMX19_03289 0.59 +0.1
636,909 + MPMX19_03289 0.59 -2.6
636,909 + MPMX19_03289 0.59 +1.6
636,910 - MPMX19_03289 0.59 -1.1
636,910 - MPMX19_03289 0.59 -0.7
636,910 - MPMX19_03289 0.59 +1.1
636,910 - MPMX19_03289 0.59 +1.0
636,910 - MPMX19_03289 0.59 +0.1
636,910 - MPMX19_03289 0.59 -0.3
637,092 + MPMX19_03289 0.77 -0.3
637,092 + MPMX19_03289 0.77 +0.6
637,093 - MPMX19_03289 0.77 -0.8
637,093 - MPMX19_03289 0.77 -0.9
637,095 + MPMX19_03289 0.77 +1.0
637,095 + MPMX19_03289 0.77 +1.1
637,095 + MPMX19_03289 0.77 -1.0
637,095 + MPMX19_03289 0.77 -0.2
637,095 + MPMX19_03289 0.77 +0.6
637,095 + MPMX19_03289 0.77 -0.5
637,095 + MPMX19_03289 0.77 -0.6
637,095 + MPMX19_03289 0.77 +0.5
637,096 - MPMX19_03289 0.77 -0.4
637,096 - MPMX19_03289 0.77 +0.2
637,096 - MPMX19_03289 0.77 +0.9
637,411 + +0.4
637,433 - -1.4
637,464 + +0.3
637,465 - -0.7
637,465 - +0.8
637,469 - -0.6
637,472 - +1.4
637,472 - -0.8
637,493 + +0.6
637,493 + -0.8
637,513 + -0.4
637,514 - -0.8
637,618 + -0.5
637,618 + -1.0
637,619 - -0.9
638,376 + +0.3
638,376 + -1.0
638,376 + -1.1
638,491 + +1.9
638,491 + -0.1
638,491 + -0.4
638,491 + +0.1
638,491 + -0.0
638,491 + +0.7
638,491 + +0.4
638,491 + +0.5
638,491 + -1.0
638,492 - +1.8
638,492 - -1.5
638,492 - +0.1
638,669 + MPMX19_03291 0.34 -1.1
638,669 + MPMX19_03291 0.34 +0.4
638,669 + MPMX19_03291 0.34 -0.0
638,669 + MPMX19_03291 0.34 -0.8
638,669 + MPMX19_03291 0.34 +0.2
638,669 + MPMX19_03291 0.34 +0.7
638,669 + MPMX19_03291 0.34 +0.4
638,669 + MPMX19_03291 0.34 +1.1
638,670 - MPMX19_03291 0.34 +0.2
638,670 - MPMX19_03291 0.34 +0.6
638,670 - MPMX19_03291 0.34 -0.6
638,670 - MPMX19_03291 0.34 +0.4
638,670 - MPMX19_03291 0.34 -1.7
638,675 + MPMX19_03291 0.35 -0.6
638,675 + MPMX19_03291 0.35 -1.6
638,675 + MPMX19_03291 0.35 -0.5
638,675 + MPMX19_03291 0.35 -0.2
638,675 + MPMX19_03291 0.35 -2.0
638,675 + MPMX19_03291 0.35 -1.9
638,675 + MPMX19_03291 0.35 -0.1
638,675 + MPMX19_03291 0.35 +0.6
638,676 - MPMX19_03291 0.35 -0.6
638,676 - MPMX19_03291 0.35 +0.3
638,676 - MPMX19_03291 0.35 -0.3
638,676 - MPMX19_03291 0.35 +0.1
638,676 - MPMX19_03291 0.35 -0.0
638,676 - MPMX19_03291 0.35 -0.4
638,676 - MPMX19_03291 0.35 -2.0
638,676 - MPMX19_03291 0.35 -1.1
638,781 - MPMX19_03291 0.50 -0.2
638,942 + MPMX19_03291 0.72 -0.4
638,942 + MPMX19_03291 0.72 +1.0
639,146 + -0.9
639,147 - -0.0
639,147 - +1.1
639,147 - -0.7
639,147 - +0.6
639,147 - +0.1
639,147 - -2.3
639,147 - -0.4
639,254 + -2.0
639,254 + +0.1
639,254 + +0.5
639,254 + +0.6
639,255 - -0.2

Or see this region's nucleotide sequence