Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03219 and MPMX19_03220 are separated by 121 nucleotides MPMX19_03220 and MPMX19_03221 are separated by 8 nucleotides MPMX19_03221 and MPMX19_03222 overlap by 4 nucleotides MPMX19_03222 and MPMX19_03223 are separated by 226 nucleotides
MPMX19_03219: MPMX19_03219 - putative ABC transporter ATP-binding protein YheS, at 518,954 to 520,552
_03219
MPMX19_03220: MPMX19_03220 - hypothetical protein, at 520,674 to 521,312
_03220
MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673
_03221
MPMX19_03222: MPMX19_03222 - Transcriptional regulatory protein OmpR, at 522,670 to 523,410
_03222
MPMX19_03223: MPMX19_03223 - hypothetical protein, at 523,637 to 524,407
_03223
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 520.842 kb on + strand, within MPMX19_03220 at 520.984 kb on - strand, within MPMX19_03220 at 521.010 kb on + strand, within MPMX19_03220 at 521.010 kb on + strand, within MPMX19_03220 at 521.010 kb on + strand, within MPMX19_03220 at 521.010 kb on + strand, within MPMX19_03220 at 521.010 kb on + strand, within MPMX19_03220 at 521.010 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.022 kb on + strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.023 kb on - strand, within MPMX19_03220 at 521.369 kb on + strand at 521.470 kb on - strand, within MPMX19_03221 at 521.470 kb on - strand, within MPMX19_03221 at 521.470 kb on - strand, within MPMX19_03221 at 521.470 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.950 kb on - strand, within MPMX19_03221 at 521.950 kb on - strand, within MPMX19_03221 at 522.375 kb on + strand, within MPMX19_03221 at 522.375 kb on + strand, within MPMX19_03221 at 522.376 kb on - strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 523.103 kb on + strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.341 kb on + strand at 523.344 kb on - strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.490 kb on - strand at 523.490 kb on - strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.537 kb on + strand at 523.538 kb on - strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 520,842 + MPMX19_03220 0.26 -0.5 520,984 - MPMX19_03220 0.49 -0.6 521,010 + MPMX19_03220 0.53 -1.0 521,010 + MPMX19_03220 0.53 -0.6 521,010 + MPMX19_03220 0.53 -0.4 521,010 + MPMX19_03220 0.53 +0.0 521,010 + MPMX19_03220 0.53 -0.0 521,010 + MPMX19_03220 0.53 +0.3 521,022 + MPMX19_03220 0.54 -0.2 521,022 + MPMX19_03220 0.54 +0.3 521,022 + MPMX19_03220 0.54 -0.8 521,022 + MPMX19_03220 0.54 -0.0 521,022 + MPMX19_03220 0.54 -0.7 521,022 + MPMX19_03220 0.54 -0.5 521,022 + MPMX19_03220 0.54 +1.1 521,023 - MPMX19_03220 0.55 +0.2 521,023 - MPMX19_03220 0.55 -1.1 521,023 - MPMX19_03220 0.55 +0.1 521,023 - MPMX19_03220 0.55 -0.2 521,023 - MPMX19_03220 0.55 +0.9 521,023 - MPMX19_03220 0.55 -2.0 521,023 - MPMX19_03220 0.55 +0.8 521,023 - MPMX19_03220 0.55 -0.1 521,023 - MPMX19_03220 0.55 +1.2 521,023 - MPMX19_03220 0.55 -0.4 521,023 - MPMX19_03220 0.55 -0.1 521,369 + +0.4 521,470 - MPMX19_03221 0.11 +0.1 521,470 - MPMX19_03221 0.11 +0.4 521,470 - MPMX19_03221 0.11 -0.0 521,470 - MPMX19_03221 0.11 -1.5 521,704 - MPMX19_03221 0.28 -0.7 521,704 - MPMX19_03221 0.28 +0.1 521,704 - MPMX19_03221 0.28 -1.5 521,784 + MPMX19_03221 0.34 -0.8 521,784 + MPMX19_03221 0.34 -1.0 521,784 + MPMX19_03221 0.34 -0.4 521,784 + MPMX19_03221 0.34 -0.8 521,784 + MPMX19_03221 0.34 +0.7 521,784 + MPMX19_03221 0.34 -0.2 521,784 + MPMX19_03221 0.34 -1.0 521,785 - MPMX19_03221 0.34 -0.7 521,785 - MPMX19_03221 0.34 -1.0 521,785 - MPMX19_03221 0.34 -0.0 521,785 - MPMX19_03221 0.34 +1.4 521,785 - MPMX19_03221 0.34 +0.1 521,785 - MPMX19_03221 0.34 -0.2 521,949 + MPMX19_03221 0.46 -0.0 521,949 + MPMX19_03221 0.46 +0.4 521,949 + MPMX19_03221 0.46 -0.4 521,949 + MPMX19_03221 0.46 -0.0 521,950 - MPMX19_03221 0.46 -0.7 521,950 - MPMX19_03221 0.46 -0.7 522,375 + MPMX19_03221 0.78 -0.5 522,375 + MPMX19_03221 0.78 -1.2 522,376 - MPMX19_03221 0.78 +0.3 522,381 + MPMX19_03221 0.78 -0.4 522,381 + MPMX19_03221 0.78 -1.3 522,381 + MPMX19_03221 0.78 -0.8 522,382 - MPMX19_03221 0.78 -0.8 522,382 - MPMX19_03221 0.78 -0.0 522,382 - MPMX19_03221 0.78 -0.5 522,382 - MPMX19_03221 0.78 +0.2 522,382 - MPMX19_03221 0.78 -1.3 522,713 + -1.3 522,713 + +0.4 522,713 + -0.6 522,713 + -0.4 522,713 + +0.7 522,713 + -0.7 522,713 + +0.2 522,713 + +1.0 522,713 + +0.1 522,713 + -0.5 522,713 + -0.4 522,713 + +0.7 522,713 + +0.4 522,713 + +0.3 522,714 - +0.5 522,714 - +0.5 522,714 - -0.9 522,714 - +0.5 522,714 - -0.1 522,714 - +0.0 522,714 - +0.3 522,714 - +0.3 522,714 - -1.3 522,714 - +1.0 523,103 + MPMX19_03222 0.58 -0.2 523,104 - MPMX19_03222 0.59 -0.7 523,104 - MPMX19_03222 0.59 -0.6 523,341 + -0.4 523,344 - +0.8 523,442 + -2.4 523,442 + +1.3 523,442 + +0.5 523,442 + -0.3 523,442 + -0.1 523,442 + -1.0 523,442 + +1.1 523,442 + +0.2 523,442 + -0.0 523,442 + -0.8 523,442 + -0.5 523,442 + -0.8 523,442 + -1.5 523,443 - -0.1 523,443 - -1.4 523,443 - -1.3 523,443 - -0.2 523,443 - -0.8 523,443 - +0.1 523,443 - -1.5 523,443 - +0.8 523,443 - +0.2 523,443 - -0.0 523,489 + +0.2 523,489 + -2.4 523,489 + +0.2 523,490 - +0.3 523,490 - -0.0 523,508 + -2.0 523,508 + -1.4 523,508 + +0.2 523,509 - -0.4 523,509 - -0.6 523,509 - -0.4 523,509 - -0.0 523,537 + +0.2 523,538 - -0.5 523,630 + -0.5 523,630 + +0.2 523,630 + -0.6 523,630 + +0.4 523,630 + +0.3 523,631 - -1.0 523,631 - +0.4 523,631 - -1.8 523,631 - -0.6 523,631 - -1.0 523,631 - -0.0 523,631 - -1.6
Or see this region's nucleotide sequence