Strain Fitness in Pseudomonas sp. DMC3 around GFF5102

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5100 and GFF5101 are separated by 135 nucleotidesGFF5101 and GFF5102 are separated by 402 nucleotidesGFF5102 and GFF5103 overlap by 4 nucleotides GFF5100 - Assimilatory nitrate reductase catalytic subunit, at 85,642 to 87,747 GFF5100 GFF5101 - hypothetical protein, at 87,883 to 88,173 GFF5101 GFF5102 - Ornithine carbamoyltransferase 1, anabolic, at 88,576 to 89,499 GFF5102 GFF5103 - Vitamin B12 import ATP-binding protein BtuD, at 89,496 to 90,605 GFF5103 Position (kb) 88 89 90Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 87.577 kb on - strandat 87.606 kb on + strandat 87.607 kb on - strandat 87.607 kb on - strandat 87.801 kb on + strandat 87.801 kb on + strandat 87.801 kb on + strandat 87.801 kb on + strandat 87.802 kb on - strandat 87.871 kb on - strandat 88.150 kb on + strandat 88.150 kb on + strandat 88.151 kb on - strandat 88.202 kb on + strandat 88.202 kb on + strandat 88.203 kb on - strandat 88.203 kb on - strandat 88.203 kb on - strandat 88.203 kb on - strandat 88.206 kb on + strandat 88.206 kb on + strandat 88.206 kb on + strandat 88.207 kb on - strandat 88.207 kb on - strandat 88.207 kb on - strandat 88.207 kb on - strandat 88.343 kb on + strandat 88.343 kb on + strandat 88.343 kb on + strandat 88.343 kb on + strandat 88.344 kb on - strandat 88.344 kb on - strandat 88.364 kb on - strandat 88.431 kb on - strandat 88.455 kb on + strandat 88.502 kb on - strandat 88.559 kb on + strandat 88.560 kb on - strandat 88.671 kb on + strand, within GFF5102at 88.683 kb on - strand, within GFF5102at 88.902 kb on + strand, within GFF5102at 88.903 kb on - strand, within GFF5102at 88.903 kb on - strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.077 kb on + strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.078 kb on - strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.079 kb on + strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.080 kb on - strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.081 kb on + strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.082 kb on - strand, within GFF5102at 89.135 kb on - strand, within GFF5102at 89.486 kb on - strandat 89.486 kb on - strandat 89.486 kb on - strandat 89.509 kb on + strandat 89.509 kb on + strandat 89.510 kb on - strandat 89.510 kb on - strandat 89.542 kb on - strandat 89.766 kb on + strand, within GFF5103at 89.766 kb on + strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 90.122 kb on - strand, within GFF5103at 90.159 kb on + strand, within GFF5103at 90.159 kb on + strand, within GFF5103at 90.159 kb on + strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.168 kb on + strand, within GFF5103at 90.169 kb on - strand, within GFF5103at 90.189 kb on + strand, within GFF5103at 90.189 kb on + strand, within GFF5103at 90.189 kb on + strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.291 kb on + strand, within GFF5103at 90.291 kb on + strand, within GFF5103at 90.292 kb on - strand, within GFF5103at 90.292 kb on - strand, within GFF5103at 90.349 kb on - strand, within GFF5103at 90.359 kb on + strand, within GFF5103at 90.360 kb on - strand, within GFF5103at 90.414 kb on + strand, within GFF5103at 90.414 kb on + strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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87,577 - -0.3
87,606 + -1.4
87,607 - -0.8
87,607 - +0.9
87,801 + +0.8
87,801 + -0.6
87,801 + +0.6
87,801 + +0.0
87,802 - +0.5
87,871 - +0.3
88,150 + +0.3
88,150 + +0.0
88,151 - +0.4
88,202 + +0.6
88,202 + +1.0
88,203 - -0.9
88,203 - +0.1
88,203 - -1.1
88,203 - +0.2
88,206 + -1.7
88,206 + +0.5
88,206 + -0.5
88,207 - -2.0
88,207 - +1.0
88,207 - +1.3
88,207 - -1.3
88,343 + +2.1
88,343 + -0.1
88,343 + -0.6
88,343 + -0.2
88,344 - +1.0
88,344 - +0.5
88,364 - -0.5
88,431 - -0.5
88,455 + -0.8
88,502 - -1.2
88,559 + +0.1
88,560 - -1.7
88,671 + GFF5102 0.10 -1.2
88,683 - GFF5102 0.12 -1.2
88,902 + GFF5102 0.35 -2.5
88,903 - GFF5102 0.35 -0.7
88,903 - GFF5102 0.35 -2.8
89,077 + GFF5102 0.54 -0.4
89,077 + GFF5102 0.54 -2.6
89,077 + GFF5102 0.54 -1.2
89,077 + GFF5102 0.54 -3.5
89,077 + GFF5102 0.54 -2.7
89,077 + GFF5102 0.54 -1.8
89,077 + GFF5102 0.54 -3.2
89,077 + GFF5102 0.54 -0.7
89,077 + GFF5102 0.54 -0.8
89,078 - GFF5102 0.54 -1.8
89,078 - GFF5102 0.54 -3.5
89,078 - GFF5102 0.54 +0.3
89,078 - GFF5102 0.54 -3.0
89,078 - GFF5102 0.54 -2.8
89,078 - GFF5102 0.54 -2.3
89,078 - GFF5102 0.54 -3.1
89,078 - GFF5102 0.54 -2.2
89,078 - GFF5102 0.54 -2.2
89,078 - GFF5102 0.54 -3.1
89,079 + GFF5102 0.54 -2.8
89,079 + GFF5102 0.54 -4.0
89,079 + GFF5102 0.54 -2.6
89,079 + GFF5102 0.54 -2.4
89,079 + GFF5102 0.54 -1.8
89,079 + GFF5102 0.54 -3.6
89,079 + GFF5102 0.54 -2.9
89,080 - GFF5102 0.55 -3.5
89,080 - GFF5102 0.55 -1.5
89,080 - GFF5102 0.55 -3.1
89,080 - GFF5102 0.55 -1.8
89,080 - GFF5102 0.55 -1.5
89,080 - GFF5102 0.55 -2.8
89,080 - GFF5102 0.55 -2.2
89,081 + GFF5102 0.55 -3.7
89,081 + GFF5102 0.55 -3.7
89,081 + GFF5102 0.55 -2.2
89,081 + GFF5102 0.55 -4.8
89,081 + GFF5102 0.55 -3.0
89,081 + GFF5102 0.55 -3.6
89,081 + GFF5102 0.55 -2.5
89,081 + GFF5102 0.55 -3.1
89,081 + GFF5102 0.55 -1.5
89,081 + GFF5102 0.55 -2.7
89,081 + GFF5102 0.55 -1.8
89,081 + GFF5102 0.55 -1.9
89,081 + GFF5102 0.55 -3.7
89,081 + GFF5102 0.55 -3.9
89,081 + GFF5102 0.55 -3.2
89,081 + GFF5102 0.55 -3.1
89,081 + GFF5102 0.55 -1.8
89,081 + GFF5102 0.55 -1.8
89,082 - GFF5102 0.55 -3.7
89,082 - GFF5102 0.55 -2.3
89,082 - GFF5102 0.55 -1.7
89,082 - GFF5102 0.55 -3.1
89,082 - GFF5102 0.55 -1.4
89,082 - GFF5102 0.55 -2.8
89,082 - GFF5102 0.55 -2.1
89,082 - GFF5102 0.55 -1.0
89,082 - GFF5102 0.55 -2.1
89,082 - GFF5102 0.55 -2.6
89,082 - GFF5102 0.55 -1.6
89,082 - GFF5102 0.55 -1.8
89,082 - GFF5102 0.55 -3.5
89,082 - GFF5102 0.55 -4.2
89,082 - GFF5102 0.55 -2.7
89,082 - GFF5102 0.55 -2.5
89,082 - GFF5102 0.55 -1.4
89,135 - GFF5102 0.60 -3.2
89,486 - -0.7
89,486 - -0.1
89,486 - -1.3
89,509 + -0.6
89,509 + +0.2
89,510 - +0.1
89,510 - -1.7
89,542 - -0.2
89,766 + GFF5103 0.24 -0.1
89,766 + GFF5103 0.24 +0.6
89,767 - GFF5103 0.24 +0.6
89,767 - GFF5103 0.24 -0.1
89,767 - GFF5103 0.24 +0.5
89,767 - GFF5103 0.24 +2.0
90,122 - GFF5103 0.56 -0.1
90,159 + GFF5103 0.60 +0.7
90,159 + GFF5103 0.60 -2.0
90,159 + GFF5103 0.60 -0.5
90,160 - GFF5103 0.60 +1.6
90,160 - GFF5103 0.60 -2.0
90,160 - GFF5103 0.60 -1.4
90,160 - GFF5103 0.60 +0.4
90,160 - GFF5103 0.60 +0.5
90,168 + GFF5103 0.61 -1.2
90,169 - GFF5103 0.61 -0.1
90,189 + GFF5103 0.62 -0.4
90,189 + GFF5103 0.62 -0.8
90,189 + GFF5103 0.62 +0.0
90,190 - GFF5103 0.63 -2.8
90,190 - GFF5103 0.63 +0.7
90,190 - GFF5103 0.63 -0.8
90,190 - GFF5103 0.63 +0.1
90,190 - GFF5103 0.63 +0.5
90,190 - GFF5103 0.63 -0.0
90,190 - GFF5103 0.63 -0.7
90,190 - GFF5103 0.63 +0.1
90,291 + GFF5103 0.72 +0.8
90,291 + GFF5103 0.72 +0.1
90,292 - GFF5103 0.72 +0.2
90,292 - GFF5103 0.72 -1.8
90,349 - GFF5103 0.77 -0.5
90,359 + GFF5103 0.78 +0.0
90,360 - GFF5103 0.78 -1.4
90,414 + GFF5103 0.83 -1.5
90,414 + GFF5103 0.83 -0.0
90,415 - GFF5103 0.83 -1.0
90,415 - GFF5103 0.83 -1.2
90,415 - GFF5103 0.83 +0.5
90,415 - GFF5103 0.83 +0.6
90,415 - GFF5103 0.83 -0.5
90,415 - GFF5103 0.83 -0.8
90,415 - GFF5103 0.83 +0.2

Or see this region's nucleotide sequence