Strain Fitness in Pseudomonas sp. DMC3 around GFF2037

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2035 and GFF2036 overlap by 4 nucleotidesGFF2036 and GFF2037 are separated by 27 nucleotidesGFF2037 and GFF2038 are separated by 119 nucleotides GFF2035 - hypothetical protein, at 277,286 to 278,677 GFF2035 GFF2036 - hypothetical protein, at 278,674 to 279,363 GFF2036 GFF2037 - hypothetical protein, at 279,391 to 279,789 GFF2037 GFF2038 - Glycerol-3-phosphate acyltransferase, at 279,909 to 282,533 GFF2038 Position (kb) 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 278.415 kb on + strand, within GFF2035at 278.416 kb on - strand, within GFF2035at 278.485 kb on + strand, within GFF2035at 278.614 kb on + strandat 278.615 kb on - strandat 278.622 kb on + strandat 278.668 kb on - strandat 278.676 kb on - strandat 278.682 kb on + strandat 278.682 kb on + strandat 278.795 kb on + strand, within GFF2036at 278.795 kb on + strand, within GFF2036at 278.796 kb on - strand, within GFF2036at 278.796 kb on - strand, within GFF2036at 278.796 kb on - strand, within GFF2036at 278.796 kb on - strand, within GFF2036at 278.796 kb on - strand, within GFF2036at 278.864 kb on + strand, within GFF2036at 278.865 kb on - strand, within GFF2036at 278.865 kb on - strand, within GFF2036at 278.865 kb on - strand, within GFF2036at 279.351 kb on + strandat 279.548 kb on + strand, within GFF2037at 279.549 kb on - strand, within GFF2037at 279.692 kb on + strand, within GFF2037at 279.851 kb on + strandat 279.851 kb on + strandat 279.851 kb on + strandat 280.049 kb on - strandat 280.248 kb on + strand, within GFF2038at 280.248 kb on + strand, within GFF2038at 280.249 kb on - strand, within GFF2038at 280.249 kb on - strand, within GFF2038at 280.258 kb on + strand, within GFF2038at 280.259 kb on - strand, within GFF2038at 280.259 kb on - strand, within GFF2038at 280.259 kb on - strand, within GFF2038at 280.259 kb on - strand, within GFF2038at 280.342 kb on + strand, within GFF2038at 280.413 kb on + strand, within GFF2038at 280.413 kb on + strand, within GFF2038at 280.413 kb on + strand, within GFF2038at 280.414 kb on - strand, within GFF2038at 280.457 kb on - strand, within GFF2038at 280.512 kb on - strand, within GFF2038at 280.573 kb on + strand, within GFF2038at 280.574 kb on - strand, within GFF2038at 280.574 kb on - strand, within GFF2038at 280.574 kb on - strand, within GFF2038at 280.576 kb on + strand, within GFF2038at 280.576 kb on + strand, within GFF2038at 280.577 kb on - strand, within GFF2038at 280.577 kb on - strand, within GFF2038at 280.577 kb on - strand, within GFF2038at 280.577 kb on - strand, within GFF2038at 280.577 kb on - strand, within GFF2038at 280.609 kb on + strand, within GFF2038at 280.609 kb on + strand, within GFF2038at 280.744 kb on + strand, within GFF2038at 280.744 kb on + strand, within GFF2038at 280.745 kb on - strand, within GFF2038

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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278,415 + GFF2035 0.81 -0.8
278,416 - GFF2035 0.81 -1.1
278,485 + GFF2035 0.86 -0.3
278,614 + -1.8
278,615 - -0.2
278,622 + +0.8
278,668 - +0.1
278,676 - +0.6
278,682 + +0.6
278,682 + +0.5
278,795 + GFF2036 0.18 -0.4
278,795 + GFF2036 0.18 -1.6
278,796 - GFF2036 0.18 +0.6
278,796 - GFF2036 0.18 +0.1
278,796 - GFF2036 0.18 +1.6
278,796 - GFF2036 0.18 -0.1
278,796 - GFF2036 0.18 -0.1
278,864 + GFF2036 0.28 -0.3
278,865 - GFF2036 0.28 -0.2
278,865 - GFF2036 0.28 +1.3
278,865 - GFF2036 0.28 -0.5
279,351 + -1.0
279,548 + GFF2037 0.39 -1.1
279,549 - GFF2037 0.40 -0.5
279,692 + GFF2037 0.75 -1.2
279,851 + -0.4
279,851 + -1.8
279,851 + -0.3
280,049 - -0.9
280,248 + GFF2038 0.13 -0.2
280,248 + GFF2038 0.13 +1.8
280,249 - GFF2038 0.13 +0.1
280,249 - GFF2038 0.13 +1.0
280,258 + GFF2038 0.13 -0.6
280,259 - GFF2038 0.13 +1.3
280,259 - GFF2038 0.13 -0.5
280,259 - GFF2038 0.13 +1.9
280,259 - GFF2038 0.13 +0.3
280,342 + GFF2038 0.16 -0.1
280,413 + GFF2038 0.19 +0.1
280,413 + GFF2038 0.19 +0.1
280,413 + GFF2038 0.19 +1.8
280,414 - GFF2038 0.19 -0.2
280,457 - GFF2038 0.21 -0.4
280,512 - GFF2038 0.23 +0.4
280,573 + GFF2038 0.25 -1.0
280,574 - GFF2038 0.25 -0.7
280,574 - GFF2038 0.25 +0.5
280,574 - GFF2038 0.25 +1.1
280,576 + GFF2038 0.25 +1.1
280,576 + GFF2038 0.25 -0.2
280,577 - GFF2038 0.25 +0.8
280,577 - GFF2038 0.25 +0.3
280,577 - GFF2038 0.25 +2.1
280,577 - GFF2038 0.25 +1.4
280,577 - GFF2038 0.25 -0.0
280,609 + GFF2038 0.27 -0.4
280,609 + GFF2038 0.27 +0.3
280,744 + GFF2038 0.32 +1.2
280,744 + GFF2038 0.32 -1.2
280,745 - GFF2038 0.32 -0.5

Or see this region's nucleotide sequence