Strain Fitness in Sphingobium sp. HT1-2 around GFF5203

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,198,667	+				+0.3
5,198,669	+				-1.6
5,198,669	+				-0.5
5,198,671	+				-2.7
5,198,677	-				-0.7
5,198,752	+		GFF5201	0.22	+0.2
5,198,760	-		GFF5201	0.23	-0.6
5,198,760	-		GFF5201	0.23	+0.9
5,198,771	-		GFF5201	0.25	-0.9
5,198,790	-		GFF5201	0.29	-0.6
5,198,790	-		GFF5201	0.29	-1.6
5,198,815	+		GFF5201	0.33	-0.4
5,198,820	+		GFF5201	0.34	-1.4
5,198,825	+		GFF5201	0.35	+0.0
5,198,841	+		GFF5201	0.38	-0.2
5,198,866	+		GFF5201	0.42	+0.3
5,198,872	-		GFF5201	0.43	-0.9
5,198,881	+		GFF5201	0.45	-1.2
5,198,881	+		GFF5201	0.45	-1.1
5,198,884	-		GFF5201	0.45	-1.0
5,198,889	-		GFF5201	0.46	-0.3
5,198,889	-		GFF5201	0.46	-0.5
5,198,924	+		GFF5201	0.52	+0.7
5,198,937	-		GFF5201	0.55	+0.4
5,198,989	-		GFF5201	0.64	-0.7
5,199,021	+		GFF5201	0.69	-1.4
5,199,059	+		GFF5201	0.76	-0.6
5,199,061	+		GFF5201	0.77	+0.4
5,199,069	-		GFF5201	0.78	-0.1
5,199,076	+		GFF5201	0.79	+0.8
5,199,082	+		GFF5201	0.80	+0.2
5,199,082	+		GFF5201	0.80	-0.0
5,199,083	+		GFF5201	0.80	+1.2
5,199,087	+		GFF5201	0.81	+0.9
5,199,087	+		GFF5201	0.81	-1.4
5,199,090	-		GFF5201	0.82	-0.3
5,199,090	-		GFF5201	0.82	-2.0
5,199,092	+		GFF5201	0.82	+0.3
5,199,095	-		GFF5201	0.83	-0.1
5,199,095	-		GFF5201	0.83	+0.2
5,199,095	-		GFF5201	0.83	-0.9
5,199,095	-		GFF5201	0.83	-1.9
5,199,100	-		GFF5201	0.83	-0.0
5,199,100	-		GFF5201	0.83	-0.1
5,199,110	-		GFF5201	0.85	+0.2
5,199,173	+				-1.7
5,199,173	+				+0.1
5,199,181	+				+0.8
5,199,232	+				-0.0
5,199,246	+		GFF5202	0.13	+0.2
5,199,246	+		GFF5202	0.13	-1.3
5,199,246	+		GFF5202	0.13	-0.1
5,199,246	+		GFF5202	0.13	-0.6
5,199,251	+		GFF5202	0.14	+0.3
5,199,251	+		GFF5202	0.14	-0.6
5,199,251	+		GFF5202	0.14	-1.0
5,199,251	+		GFF5202	0.14	-1.8
5,199,254	-		GFF5202	0.14	+1.7
5,199,254	-		GFF5202	0.14	-0.2
5,199,258	+		GFF5202	0.15	-0.2
5,199,259	-		GFF5202	0.16	-2.2
5,199,259	-		GFF5202	0.16	+1.5
5,199,259	-		GFF5202	0.16	+0.4
5,199,287	+		GFF5202	0.22	-2.4
5,199,295	+		GFF5202	0.24	-1.6
5,199,298	-		GFF5202	0.24	+1.4
5,199,308	+		GFF5202	0.27	-0.5
5,199,316	-		GFF5202	0.28	+0.2
5,199,318	+		GFF5202	0.29	-1.4
5,199,323	+		GFF5202	0.30	+0.4
5,199,328	+		GFF5202	0.31	-0.9
5,199,343	+		GFF5202	0.34	-0.8
5,199,343	+		GFF5202	0.34	+0.1
5,199,345	+		GFF5202	0.35	-0.0
5,199,351	-		GFF5202	0.36	-0.4
5,199,353	-		GFF5202	0.37	-0.1
5,199,353	-		GFF5202	0.37	+0.6
5,199,353	-		GFF5202	0.37	+0.3
5,199,358	+		GFF5202	0.38	-0.2
5,199,362	+		GFF5202	0.39	-0.8
5,199,363	+		GFF5202	0.39	-0.5
5,199,363	+		GFF5202	0.39	-1.0
5,199,363	+		GFF5202	0.39	+0.8
5,199,366	-		GFF5202	0.40	+0.2
5,199,366	-		GFF5202	0.40	-1.0
5,199,371	-		GFF5202	0.41	+0.3
5,199,371	-		GFF5202	0.41	+0.7
5,199,371	-		GFF5202	0.41	-0.9
5,199,371	-		GFF5202	0.41	-0.6
5,199,371	-		GFF5202	0.41	+0.7
5,199,371	-		GFF5202	0.41	-1.0
5,199,379	-		GFF5202	0.43	-1.7
5,199,387	+		GFF5202	0.44	-0.9
5,199,411	-		GFF5202	0.50	-0.8
5,199,416	-		GFF5202	0.51	+0.3
5,199,445	+		GFF5202	0.57	-0.3
5,199,445	-		GFF5202	0.57	+0.6
5,199,455	+		GFF5202	0.60	+0.1
5,199,462	+		GFF5202	0.61	+0.6
5,199,471	+		GFF5202	0.63	-0.2
5,199,476	+		GFF5202	0.64	-1.7
5,199,489	-		GFF5202	0.67	-0.5
5,199,508	+		GFF5202	0.72	+0.3
5,199,545	+		GFF5202	0.80	+0.0
5,199,545	+		GFF5202	0.80	+1.2
5,199,545	+		GFF5202	0.80	-1.4
5,199,545	+		GFF5202	0.80	-1.2
5,199,545	+		GFF5202	0.80	-2.5
5,199,545	+		GFF5202	0.80	-0.3
5,199,545	+		GFF5202	0.80	-0.8
5,199,545	+		GFF5202	0.80	-0.1
5,199,545	+		GFF5202	0.80	-2.1
5,199,545	+		GFF5202	0.80	-1.1
5,199,545	+		GFF5202	0.80	-0.6
5,199,545	+		GFF5202	0.80	+0.2
5,199,545	+		GFF5202	0.80	+0.1
5,199,545	+		GFF5202	0.80	+0.7
5,199,545	+		GFF5202	0.80	+0.1
5,199,545	+		GFF5202	0.80	-1.5
5,199,545	+		GFF5202	0.80	-0.9
5,199,545	+		GFF5202	0.80	+0.3
5,199,545	+		GFF5202	0.80	-1.0
5,199,545	+		GFF5202	0.80	+0.5
5,199,553	-		GFF5202	0.82	+0.2
5,199,553	-		GFF5202	0.82	-0.7
5,199,553	-		GFF5202	0.82	+0.7
5,199,553	-		GFF5202	0.82	-1.2
5,199,553	-		GFF5202	0.82	+0.3
5,199,553	-		GFF5202	0.82	-0.8
5,199,553	-		GFF5202	0.82	-1.8
5,199,553	-		GFF5202	0.82	+0.9
5,199,553	-		GFF5202	0.82	+1.2
5,199,553	-		GFF5202	0.82	-1.8
5,199,553	-		GFF5202	0.82	+0.2
5,199,553	-		GFF5202	0.82	-0.6
5,199,553	-		GFF5202	0.82	-1.1
5,199,553	-		GFF5202	0.82	+0.8
5,199,553	-		GFF5202	0.82	-0.3
5,199,553	-		GFF5202	0.82	-1.2
5,199,553	-		GFF5202	0.82	+0.4
5,199,553	-		GFF5202	0.82	-1.6
5,199,553	-		GFF5202	0.82	+0.4
5,199,553	-		GFF5202	0.82	-0.8
5,199,553	-		GFF5202	0.82	+0.1
5,199,560	+		GFF5202	0.83	+0.4
5,199,587	+		GFF5202	0.89	+0.1
5,199,589	+				-0.1
5,199,606	+				+0.6
5,199,606	+				+0.5
5,199,606	+				-0.3
5,199,612	+				-1.3
5,199,614	-				-0.7
5,199,614	-				-0.8
5,199,637	+				-0.8
5,199,648	+				-1.2
5,199,689	-		GFF5203	0.22	-1.3
5,199,708	+		GFF5203	0.29	+0.1
5,199,716	-		GFF5203	0.32	+0.8
5,199,753	+		GFF5203	0.46	+0.2
5,199,771	-		GFF5203	0.52	+0.5
5,199,776	-		GFF5203	0.54	+1.2
5,199,777	+		GFF5203	0.54	+0.1
5,199,786	-		GFF5203	0.58	-0.6
5,199,793	+		GFF5203	0.60	-0.8
5,199,793	+		GFF5203	0.60	-0.3
5,199,793	+		GFF5203	0.60	-1.5
5,199,793	+		GFF5203	0.60	-0.7
5,199,793	+		GFF5203	0.60	-0.7
5,199,793	+		GFF5203	0.60	-2.0
5,199,793	+		GFF5203	0.60	-1.1
5,199,793	+		GFF5203	0.60	+0.4
5,199,793	+		GFF5203	0.60	-0.9
5,199,793	+		GFF5203	0.60	+0.9
5,199,793	+		GFF5203	0.60	-0.6
5,199,793	+		GFF5203	0.60	-0.7
5,199,801	-		GFF5203	0.63	-0.1
5,199,801	-		GFF5203	0.63	-0.2
5,199,801	-		GFF5203	0.63	-0.7
5,199,801	-		GFF5203	0.63	-1.9
5,199,801	-		GFF5203	0.63	-0.3
5,199,801	-		GFF5203	0.63	+0.2
5,199,801	-		GFF5203	0.63	+0.3
5,199,801	-		GFF5203	0.63	-0.9
5,199,801	-		GFF5203	0.63	-1.8
5,199,801	-		GFF5203	0.63	+1.4
5,199,818	+		GFF5203	0.70	+1.0
5,199,836	-		GFF5203	0.76	+0.6
5,199,836	-		GFF5203	0.76	-1.0
5,199,836	-		GFF5203	0.76	-0.6
5,199,842	+		GFF5203	0.79	-1.5
5,199,842	+		GFF5203	0.79	-0.8
5,199,852	+		GFF5203	0.82	-0.7
5,199,852	+		GFF5203	0.82	-1.4
5,199,879	-				-0.1
5,199,883	+				+1.1
5,199,889	+				-1.8
5,199,901	-				-0.8
5,199,903	-				+0.4
5,199,918	+				-1.6
5,199,920	+				-0.1
5,199,920	+				-2.0
5,199,921	-				-1.1
5,199,939	+				-0.8
5,199,939	+				-0.6
5,199,939	+				+0.1
5,199,946	+				-0.3
5,199,947	-				-3.7
5,199,947	-				-0.0
5,199,947	-				-1.2
5,199,947	-				-0.6
5,199,993	-				+0.5
5,200,026	+				-0.2
5,200,047	-				-0.1
5,200,072	+		GFF5204	0.11	+0.8
5,200,074	-		GFF5204	0.11	+0.2
5,200,080	-		GFF5204	0.13	+0.6
5,200,080	-		GFF5204	0.13	+1.3
5,200,086	+		GFF5204	0.14	+0.3
5,200,086	+		GFF5204	0.14	-1.0
5,200,091	+		GFF5204	0.16	-0.4
5,200,097	+		GFF5204	0.17	-0.7
5,200,097	+		GFF5204	0.17	+0.4
5,200,103	+		GFF5204	0.19	-0.7
5,200,152	-		GFF5204	0.32	-0.8
5,200,172	-		GFF5204	0.37	-1.4
5,200,179	-		GFF5204	0.39	+1.3
5,200,310	+		GFF5204	0.74	+0.5
5,200,310	+		GFF5204	0.74	+1.7
5,200,333	+		GFF5204	0.80	+0.4
5,200,333	+		GFF5204	0.80	-0.6
5,200,333	+		GFF5204	0.80	-0.7
5,200,333	+		GFF5204	0.80	-0.8
5,200,341	-		GFF5204	0.82	-0.7
5,200,344	+		GFF5204	0.83	-1.2
5,200,344	+		GFF5204	0.83	+0.7
5,200,356	+		GFF5204	0.86	-0.1
5,200,363	-		GFF5204	0.88	-1.9
5,200,377	+				-0.4
5,200,382	+				+0.4
5,200,390	-				-1.0
5,200,390	-				-0.6
5,200,393	+				+0.2
5,200,419	-				-0.2
5,200,421	+				-0.3
5,200,421	+				-0.9
5,200,429	-				+0.2
5,200,429	-				-0.8
5,200,429	-				-0.6
5,200,460	-				-0.3
5,200,462	-				+1.2
5,200,467	-				-0.3
5,200,482	+				-1.4
5,200,488	+				-0.1
5,200,505	-				-0.8
5,200,516	-		GFF5205	0.11	+0.7
5,200,522	+		GFF5205	0.11	-0.8
5,200,522	+		GFF5205	0.11	-0.0
5,200,522	+		GFF5205	0.11	-0.8
5,200,525	-		GFF5205	0.12	-0.6
5,200,525	-		GFF5205	0.12	-1.3
5,200,525	-		GFF5205	0.12	-0.6
5,200,530	-		GFF5205	0.12	-1.9
5,200,530	-		GFF5205	0.12	+0.1
5,200,530	-		GFF5205	0.12	-0.0
5,200,530	-		GFF5205	0.12	-1.4
5,200,534	+		GFF5205	0.13	-0.9
5,200,542	-		GFF5205	0.14	-0.5
5,200,544	-		GFF5205	0.14	+0.3
5,200,566	-		GFF5205	0.16	+0.1
5,200,566	-		GFF5205	0.16	-0.3
5,200,568	+		GFF5205	0.16	-1.1
5,200,568	+		GFF5205	0.16	+0.6
5,200,574	+		GFF5205	0.17	+0.1
5,200,576	-		GFF5205	0.17	+0.4
5,200,576	-		GFF5205	0.17	+0.9
5,200,576	-		GFF5205	0.17	-1.0
5,200,584	-		GFF5205	0.18	-0.3
5,200,584	-		GFF5205	0.18	-1.6
5,200,584	-		GFF5205	0.18	-0.1
5,200,584	-		GFF5205	0.18	+0.4
5,200,586	-		GFF5205	0.18	+0.8
5,200,586	-		GFF5205	0.18	-1.4
5,200,588	+		GFF5205	0.18	+0.6
5,200,588	+		GFF5205	0.18	-1.1
5,200,588	+		GFF5205	0.18	+0.1
5,200,588	+		GFF5205	0.18	+0.4
5,200,588	+		GFF5205	0.18	-1.6
5,200,588	+		GFF5205	0.18	-0.5
5,200,596	-		GFF5205	0.19	-0.4
5,200,596	-		GFF5205	0.19	-1.1
5,200,596	-		GFF5205	0.19	+0.1
5,200,596	-		GFF5205	0.19	+0.8
5,200,610	+		GFF5205	0.21	+0.1
5,200,614	+		GFF5205	0.21	-0.7
5,200,615	+		GFF5205	0.21	-0.5
5,200,622	-		GFF5205	0.22	+0.9
5,200,623	-		GFF5205	0.22	+0.2
5,200,623	-		GFF5205	0.22	-1.7
5,200,627	-		GFF5205	0.23	-1.1
5,200,631	+		GFF5205	0.23	-1.9
5,200,635	+		GFF5205	0.23	+0.1
5,200,635	+		GFF5205	0.23	-1.7
5,200,635	+		GFF5205	0.23	-0.3
5,200,640	+		GFF5205	0.24	+0.6
5,200,643	-		GFF5205	0.24	+0.1
5,200,643	-		GFF5205	0.24	-1.5
5,200,648	-		GFF5205	0.25	+0.4
5,200,648	-		GFF5205	0.25	-0.9
5,200,649	-		GFF5205	0.25	-0.4
5,200,658	+		GFF5205	0.26	-0.7
5,200,658	+		GFF5205	0.26	+1.4
5,200,663	+		GFF5205	0.26	-0.5
5,200,666	-		GFF5205	0.27	-0.8
5,200,668	+		GFF5205	0.27	+0.2
5,200,668	+		GFF5205	0.27	-1.1
5,200,668	+		GFF5205	0.27	+0.4
5,200,668	+		GFF5205	0.27	-1.4
5,200,668	+		GFF5205	0.27	-0.6
5,200,676	-		GFF5205	0.28	-0.8
5,200,676	-		GFF5205	0.28	-0.1
5,200,676	-		GFF5205	0.28	-0.6
5,200,676	-		GFF5205	0.28	-0.8
5,200,683	+		GFF5205	0.28	+0.3
5,200,693	+		GFF5205	0.30	-2.4
5,200,701	-		GFF5205	0.30	-1.3
5,200,708	-		GFF5205	0.31	-1.9
5,200,719	+		GFF5205	0.32	-1.8
5,200,721	+		GFF5205	0.32	+0.3
5,200,726	+		GFF5205	0.33	+0.1
5,200,729	-		GFF5205	0.33	+0.0
5,200,732	-		GFF5205	0.34	-0.2
5,200,734	-		GFF5205	0.34	-1.4
5,200,734	-		GFF5205	0.34	-1.2
5,200,742	-		GFF5205	0.35	-1.0
5,200,746	-		GFF5205	0.35	-0.2
5,200,758	+		GFF5205	0.36	-1.4
5,200,766	-		GFF5205	0.37	-0.9
5,200,766	-		GFF5205	0.37	-1.7
5,200,768	+		GFF5205	0.37	-1.2
5,200,768	+		GFF5205	0.37	-1.1
5,200,768	+		GFF5205	0.37	-1.0
5,200,768	+		GFF5205	0.37	-0.8
5,200,776	-		GFF5205	0.38	+0.7
5,200,776	-		GFF5205	0.38	-0.6
5,200,776	-		GFF5205	0.38	+0.6
5,200,776	-		GFF5205	0.38	-0.7
5,200,776	-		GFF5205	0.38	+0.9
5,200,778	+		GFF5205	0.39	+0.5
5,200,778	+		GFF5205	0.39	+1.3
5,200,778	+		GFF5205	0.39	+0.4
5,200,778	+		GFF5205	0.39	-0.0
5,200,786	-		GFF5205	0.39	-0.2
5,200,788	+		GFF5205	0.40	-0.7
5,200,791	-		GFF5205	0.40	-0.6
5,200,792	+		GFF5205	0.40	-0.2
5,200,810	+		GFF5205	0.42	-0.7
5,200,810	+		GFF5205	0.42	-1.5
5,200,810	+		GFF5205	0.42	+0.4
5,200,815	+		GFF5205	0.42	-0.5
5,200,815	+		GFF5205	0.42	-1.3
5,200,815	+		GFF5205	0.42	-1.1
5,200,815	+		GFF5205	0.42	-2.2
5,200,818	-		GFF5205	0.43	+0.9
5,200,819	-		GFF5205	0.43	-1.1
5,200,823	-		GFF5205	0.43	-1.4
5,200,826	+		GFF5205	0.44	-0.8
5,200,826	+		GFF5205	0.44	+0.6
5,200,840	+		GFF5205	0.45	-0.7
5,200,859	+		GFF5205	0.47	-0.7
5,200,859	+		GFF5205	0.47	+1.0
5,200,866	+		GFF5205	0.48	-1.8
5,200,867	-		GFF5205	0.48	+0.2
5,200,867	-		GFF5205	0.48	-0.6
5,200,884	-		GFF5205	0.50	+0.8