Strain Fitness in Sphingobium sp. HT1-2 around GFF4284

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,294,618	-				+0.5
4,294,624	+				-0.7
4,294,624	+				-1.3
4,294,624	+				-2.1
4,294,624	+				-1.4
4,294,632	-				+0.3
4,294,632	-				+0.4
4,294,632	-				-1.7
4,294,632	-				-1.2
4,294,639	+				+0.1
4,294,639	+				+0.4
4,294,647	-				-1.3
4,294,647	-				-0.5
4,294,665	-				+0.4
4,294,676	+				-2.5
4,294,684	-		GFF4282	0.11	-1.4
4,294,694	+		GFF4282	0.13	-1.3
4,294,694	+		GFF4282	0.13	-0.7
4,294,694	+		GFF4282	0.13	-1.3
4,294,694	+		GFF4282	0.13	-1.0
4,294,702	-		GFF4282	0.15	+0.5
4,294,702	-		GFF4282	0.15	-0.1
4,294,702	-		GFF4282	0.15	-1.8
4,294,709	+		GFF4282	0.16	-1.4
4,294,712	-		GFF4282	0.17	-1.1
4,294,713	-		GFF4282	0.17	-0.8
4,294,729	+		GFF4282	0.20	-0.8
4,294,731	+		GFF4282	0.21	-0.7
4,294,737	-		GFF4282	0.22	+0.9
4,294,737	-		GFF4282	0.22	-1.5
4,294,756	+		GFF4282	0.25	-1.3
4,294,764	-		GFF4282	0.27	-0.3
4,294,782	-		GFF4282	0.31	-1.5
4,294,782	-		GFF4282	0.31	-1.5
4,294,787	-		GFF4282	0.32	-1.3
4,294,792	+		GFF4282	0.33	-2.0
4,294,792	-		GFF4282	0.33	+1.0
4,294,800	-		GFF4282	0.34	+0.2
4,294,800	-		GFF4282	0.34	-0.4
4,294,800	-		GFF4282	0.34	+1.0
4,294,800	-		GFF4282	0.34	-0.3
4,294,820	-		GFF4282	0.38	-0.6
4,294,849	+		GFF4282	0.44	+2.1
4,294,857	-		GFF4282	0.45	-2.1
4,294,857	-		GFF4282	0.45	-0.1
4,294,885	-		GFF4282	0.51	-1.3
4,294,890	-		GFF4282	0.52	-1.8
4,294,894	+		GFF4282	0.53	-1.3
4,294,902	-		GFF4282	0.54	+0.2
4,294,916	+		GFF4282	0.57	-0.4
4,294,926	+		GFF4282	0.59	-0.8
4,294,931	+		GFF4282	0.60	+0.1
4,294,941	-		GFF4282	0.62	-0.8
4,294,944	-		GFF4282	0.62	-1.5
4,294,989	+		GFF4282	0.71	+0.8
4,294,995	+		GFF4282	0.72	+0.4
4,294,998	-		GFF4282	0.73	+0.1
4,294,998	-		GFF4282	0.73	-0.4
4,295,011	+		GFF4282	0.75	+0.4
4,295,019	-		GFF4282	0.77	-0.2
4,295,019	-		GFF4282	0.77	+0.6
4,295,029	+		GFF4282	0.79	-1.7
4,295,029	+		GFF4282	0.79	+0.3
4,295,029	+		GFF4282	0.79	+0.5
4,295,037	-		GFF4282	0.81	+1.3
4,295,037	-		GFF4282	0.81	-0.5
4,295,037	-		GFF4282	0.81	+0.3
4,295,037	-		GFF4282	0.81	-0.6
4,295,056	-		GFF4282	0.84	-0.6
4,295,064	+		GFF4282	0.86	-1.7
4,295,064	+		GFF4282	0.86	+0.5
4,295,064	+		GFF4282	0.86	-0.7
4,295,064	+		GFF4282	0.86	-0.7
4,295,065	+		GFF4282	0.86	-1.3
4,295,065	+		GFF4282	0.86	-0.6
4,295,068	-		GFF4282	0.87	+0.1
4,295,068	-		GFF4282	0.87	-0.4
4,295,072	-		GFF4282	0.87	+1.5
4,295,072	-		GFF4282	0.87	-2.1
4,295,072	-		GFF4282	0.87	-0.7
4,295,073	-		GFF4282	0.88	-0.9
4,295,073	-		GFF4282	0.88	+1.3
4,295,086	+				-2.0
4,295,086	+				-3.1
4,295,092	+				-0.5
4,295,118	+				-0.7
4,295,136	+				-1.0
4,295,136	+				+0.8
4,295,138	+				-0.3
4,295,144	+				-1.3
4,295,144	+				+1.1
4,295,144	-				-0.2
4,295,144	-				-0.9
4,295,152	-				+0.3
4,295,211	-				-0.6
4,295,229	+				-0.7
4,295,229	+				-0.9
4,295,229	+				-1.3
4,295,229	+				+0.9
4,295,229	+				-0.7
4,295,229	+				-1.8
4,295,229	+				-0.3
4,295,229	+				-1.9
4,295,237	-				+0.1
4,295,237	-				-0.1
4,295,237	-				-0.7
4,295,237	-				-1.0
4,295,237	-				+1.1
4,295,237	-				-0.4
4,295,237	-				-2.5
4,295,237	-				-1.1
4,295,237	-				-0.4
4,295,274	-		GFF4283	0.27	-1.3
4,295,288	+		GFF4283	0.35	+1.3
4,295,292	-		GFF4283	0.38	-0.1
4,295,300	-		GFF4283	0.43	-1.7
4,295,309	+		GFF4283	0.48	-0.0
4,295,332	+		GFF4283	0.62	-1.7
4,295,332	+		GFF4283	0.62	-2.0
4,295,332	+		GFF4283	0.62	-0.5
4,295,340	-		GFF4283	0.67	-0.6
4,295,368	-		GFF4283	0.85	-0.7
4,295,372	+		GFF4283	0.87	-0.7
4,295,372	+		GFF4283	0.87	-0.4
4,295,372	+		GFF4283	0.87	-0.8
4,295,380	-				+0.6
4,295,402	-				-1.3
4,295,402	-				+0.1
4,295,424	-				-0.5
4,295,463	+				-2.4
4,295,468	+				+0.2
4,295,472	-				-0.2
4,295,478	-				-1.5
4,295,506	-				-0.4
4,295,511	-				-0.2
4,295,511	-				-1.5
4,295,525	+				+0.6
4,295,531	-				+0.2
4,295,531	-				-1.5
4,295,569	+				+0.8
4,295,572	-				+0.1
4,295,572	-				+0.1
4,295,578	+				-2.6
4,295,588	+				+0.9
4,295,593	+				-1.4
4,295,596	-				+0.5
4,295,599	+				-0.1
4,295,601	-				-1.1
4,295,611	+				+0.2
4,295,611	+				+0.8
4,295,639	+				+1.5
4,295,643	-				-0.7
4,295,643	-				-0.3
4,295,653	-				-1.9
4,295,656	+				-0.4
4,295,663	+				-0.1
4,295,664	-				+0.1
4,295,697	+				+0.1
4,295,707	+				-1.8
4,295,715	-				-0.3
4,295,720	-				-0.6
4,295,737	+				+0.8
4,295,737	+				-1.9
4,295,745	-		GFF4284	0.10	-1.4
4,295,745	-		GFF4284	0.10	-0.4
4,295,745	-		GFF4284	0.10	+1.8
4,295,751	+		GFF4284	0.11	-1.0
4,295,753	+		GFF4284	0.11	-0.9
4,295,753	+		GFF4284	0.11	-1.3
4,295,754	-		GFF4284	0.11	-0.0
4,295,761	-		GFF4284	0.11	-0.9
4,295,761	-		GFF4284	0.11	-0.9
4,295,763	+		GFF4284	0.12	+0.7
4,295,763	+		GFF4284	0.12	-0.8
4,295,763	+		GFF4284	0.12	-0.0
4,295,765	+		GFF4284	0.12	-0.3
4,295,771	-		GFF4284	0.12	-0.7
4,295,775	+		GFF4284	0.12	-0.4
4,295,785	+		GFF4284	0.13	-0.7
4,295,785	+		GFF4284	0.13	-1.9
4,295,785	+		GFF4284	0.13	-0.2
4,295,785	+		GFF4284	0.13	-1.3
4,295,792	-		GFF4284	0.14	+1.3
4,295,793	-		GFF4284	0.14	-1.0
4,295,793	-		GFF4284	0.14	-1.9
4,295,793	-		GFF4284	0.14	-0.4
4,295,793	-		GFF4284	0.14	+0.6
4,295,793	-		GFF4284	0.14	-0.2
4,295,793	-		GFF4284	0.14	+0.4
4,295,793	-		GFF4284	0.14	-1.1
4,295,793	-		GFF4284	0.14	-2.4
4,295,793	-		GFF4284	0.14	+0.2
4,295,795	+		GFF4284	0.14	-0.2
4,295,795	+		GFF4284	0.14	-1.5
4,295,795	+		GFF4284	0.14	+0.2
4,295,795	+		GFF4284	0.14	+0.3
4,295,795	+		GFF4284	0.14	+0.4
4,295,795	+		GFF4284	0.14	-0.8
4,295,803	-		GFF4284	0.14	-0.9
4,295,803	-		GFF4284	0.14	-0.7
4,295,803	-		GFF4284	0.14	-0.7
4,295,822	+		GFF4284	0.16	-0.1
4,295,823	+		GFF4284	0.16	-0.8
4,295,823	+		GFF4284	0.16	-1.7
4,295,823	-		GFF4284	0.16	-1.0
4,295,824	+		GFF4284	0.16	+0.2
4,295,824	+		GFF4284	0.16	-1.0
4,295,824	+		GFF4284	0.16	+0.3
4,295,831	-		GFF4284	0.17	+0.3
4,295,832	-		GFF4284	0.17	+0.0
4,295,832	-		GFF4284	0.17	-0.3
4,295,832	-		GFF4284	0.17	-1.2
4,295,832	-		GFF4284	0.17	+0.5
4,295,837	-		GFF4284	0.17	+0.3
4,295,843	+		GFF4284	0.17	-1.7
4,295,851	-		GFF4284	0.18	-0.5
4,295,862	-		GFF4284	0.19	-1.5
4,295,912	-		GFF4284	0.22	-1.0
4,295,914	+		GFF4284	0.23	+0.3
4,295,914	+		GFF4284	0.23	-0.7
4,295,922	+		GFF4284	0.23	+0.1
4,295,922	-		GFF4284	0.23	+0.2
4,295,922	-		GFF4284	0.23	+0.3
4,295,922	-		GFF4284	0.23	-1.2
4,295,922	-		GFF4284	0.23	+1.3
4,295,922	-		GFF4284	0.23	+0.2
4,295,927	+		GFF4284	0.24	-1.3
4,295,927	+		GFF4284	0.24	-1.4
4,295,927	+		GFF4284	0.24	-0.6
4,295,927	+		GFF4284	0.24	-0.1
4,295,930	+		GFF4284	0.24	-1.0
4,295,930	+		GFF4284	0.24	-2.6
4,295,935	-		GFF4284	0.24	-0.8
4,295,935	-		GFF4284	0.24	+1.0
4,295,935	-		GFF4284	0.24	-0.8
4,295,935	-		GFF4284	0.24	+0.0
4,295,935	-		GFF4284	0.24	+0.9
4,295,935	-		GFF4284	0.24	-0.2
4,295,945	+		GFF4284	0.25	-1.4
4,295,945	+		GFF4284	0.25	+0.8
4,295,953	-		GFF4284	0.26	-1.5
4,295,957	+		GFF4284	0.26	-0.0
4,295,960	-		GFF4284	0.26	-1.3
4,295,962	+		GFF4284	0.26	-0.3
4,295,963	-		GFF4284	0.26	-1.2
4,295,963	-		GFF4284	0.26	-0.2
4,295,965	-		GFF4284	0.26	-2.0
4,295,965	-		GFF4284	0.26	-1.0
4,295,967	+		GFF4284	0.27	+0.8
4,295,967	+		GFF4284	0.27	+0.4
4,295,975	-		GFF4284	0.27	+0.1
4,295,975	-		GFF4284	0.27	+1.0
4,296,015	-		GFF4284	0.30	-1.0
4,296,067	-		GFF4284	0.34	+0.3
4,296,072	-		GFF4284	0.34	-0.7
4,296,103	+		GFF4284	0.37	-0.6
4,296,103	+		GFF4284	0.37	+1.1
4,296,109	+		GFF4284	0.37	-0.2
4,296,109	+		GFF4284	0.37	+0.5
4,296,109	+		GFF4284	0.37	-0.5
4,296,109	+		GFF4284	0.37	-0.6
4,296,109	+		GFF4284	0.37	-0.3
4,296,111	-		GFF4284	0.37	-1.7
4,296,111	-		GFF4284	0.37	-1.5
4,296,117	-		GFF4284	0.38	+0.2
4,296,118	+		GFF4284	0.38	+0.3
4,296,126	-		GFF4284	0.38	-0.5
4,296,136	+		GFF4284	0.39	-1.0
4,296,140	+		GFF4284	0.39	-0.4
4,296,144	-		GFF4284	0.40	+1.5
4,296,148	-		GFF4284	0.40	+0.1
4,296,165	+		GFF4284	0.41	-0.3
4,296,196	+		GFF4284	0.43	+0.5
4,296,196	+		GFF4284	0.43	-1.7
4,296,204	-		GFF4284	0.44	+0.3
4,296,221	+		GFF4284	0.45	-0.1
4,296,221	+		GFF4284	0.45	-0.5
4,296,223	+		GFF4284	0.45	-1.5
4,296,225	+		GFF4284	0.46	-1.3
4,296,229	-		GFF4284	0.46	-0.7
4,296,233	-		GFF4284	0.46	+0.0
4,296,243	+		GFF4284	0.47	-0.2
4,296,243	+		GFF4284	0.47	-1.8
4,296,253	+		GFF4284	0.48	-0.6
4,296,272	-		GFF4284	0.49	-1.1
4,296,278	-		GFF4284	0.49	-1.4
4,296,295	+		GFF4284	0.51	+0.2
4,296,320	-		GFF4284	0.53	-0.9
4,296,328	-		GFF4284	0.53	-0.8
4,296,344	+		GFF4284	0.54	-1.5
4,296,352	+		GFF4284	0.55	-1.1
4,296,352	+		GFF4284	0.55	+0.3
4,296,352	+		GFF4284	0.55	-1.1
4,296,360	-		GFF4284	0.56	-1.5
4,296,372	-		GFF4284	0.56	-2.3
4,296,377	-		GFF4284	0.57	+0.0
4,296,406	+		GFF4284	0.59	+0.6
4,296,408	-		GFF4284	0.59	+0.9
4,296,410	-		GFF4284	0.59	-0.7
4,296,414	-		GFF4284	0.60	-1.8
4,296,418	-		GFF4284	0.60	-0.6
4,296,435	+		GFF4284	0.61	+0.5
4,296,435	+		GFF4284	0.61	-1.5
4,296,435	+		GFF4284	0.61	-0.7
4,296,435	+		GFF4284	0.61	-1.3
4,296,441	+		GFF4284	0.62	-1.2
4,296,443	-		GFF4284	0.62	-0.4
4,296,445	+		GFF4284	0.62	-0.7
4,296,455	-		GFF4284	0.63	-1.3
4,296,464	+		GFF4284	0.63	+0.6
4,296,464	+		GFF4284	0.63	-0.5
4,296,464	+		GFF4284	0.63	-1.9
4,296,464	+		GFF4284	0.63	+0.1
4,296,464	+		GFF4284	0.63	-1.0
4,296,464	+		GFF4284	0.63	-1.5
4,296,464	+		GFF4284	0.63	-1.6
4,296,464	+		GFF4284	0.63	-0.9
4,296,472	-		GFF4284	0.64	+0.4
4,296,472	-		GFF4284	0.64	-0.3
4,296,472	-		GFF4284	0.64	-0.4
4,296,472	-		GFF4284	0.64	+0.5
4,296,472	-		GFF4284	0.64	-0.1
4,296,472	-		GFF4284	0.64	-0.7
4,296,473	+		GFF4284	0.64	-0.1
4,296,473	+		GFF4284	0.64	+0.7
4,296,473	+		GFF4284	0.64	-1.8
4,296,478	+		GFF4284	0.64	-1.7
4,296,489	+		GFF4284	0.65	-1.5
4,296,489	+		GFF4284	0.65	-0.6
4,296,489	+		GFF4284	0.65	-1.3
4,296,489	+		GFF4284	0.65	-0.4
4,296,491	-		GFF4284	0.65	-0.6
4,296,491	-		GFF4284	0.65	-2.3
4,296,503	+		GFF4284	0.66	+0.4
4,296,521	+		GFF4284	0.67	+0.3
4,296,521	+		GFF4284	0.67	-1.2
4,296,555	+		GFF4284	0.70	+0.2
4,296,555	+		GFF4284	0.70	-0.2
4,296,555	+		GFF4284	0.70	-0.5
4,296,555	+		GFF4284	0.70	+0.1
4,296,560	+		GFF4284	0.70	-1.3
4,296,577	+		GFF4284	0.72	-0.3
4,296,577	+		GFF4284	0.72	-0.7
4,296,581	+		GFF4284	0.72	-1.1
4,296,589	-		GFF4284	0.72	-1.1
4,296,595	+		GFF4284	0.73	-0.6
4,296,595	+		GFF4284	0.73	-0.8
4,296,603	-		GFF4284	0.73	-0.8
4,296,603	-		GFF4284	0.73	+0.8
4,296,603	-		GFF4284	0.73	-1.2
4,296,603	-		GFF4284	0.73	-0.1
4,296,636	-		GFF4284	0.76	-1.4
4,296,646	-		GFF4284	0.77	-0.9
4,296,652	+		GFF4284	0.77	+0.8
4,296,658	+		GFF4284	0.78	-1.1
4,296,668	+		GFF4284	0.78	-1.3
4,296,675	+		GFF4284	0.79	+0.1
4,296,683	-		GFF4284	0.79	+0.7
4,296,694	+		GFF4284	0.80	-0.7
4,296,699	+		GFF4284	0.81	+0.8
4,296,699	+		GFF4284	0.81	+0.6
4,296,707	+		GFF4284	0.81	+1.3
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