Strain Fitness in Sphingobium sp. HT1-2 around GFF2575

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,588,618	+		GFF2573	0.14	+1.1
2,588,618	+		GFF2573	0.14	-0.5
2,588,619	+		GFF2573	0.14	+0.1
2,588,626	-		GFF2573	0.15	-1.1
2,588,628	+		GFF2573	0.16	-0.9
2,588,628	+		GFF2573	0.16	+0.2
2,588,628	+		GFF2573	0.16	-0.2
2,588,628	+		GFF2573	0.16	-0.8
2,588,628	+		GFF2573	0.16	-0.5
2,588,628	+		GFF2573	0.16	-0.2
2,588,628	+		GFF2573	0.16	-1.5
2,588,636	-		GFF2573	0.17	+0.5
2,588,636	-		GFF2573	0.17	-1.1
2,588,636	-		GFF2573	0.17	+0.5
2,588,636	-		GFF2573	0.17	+0.9
2,588,636	-		GFF2573	0.17	+1.2
2,588,636	-		GFF2573	0.17	-1.7
2,588,636	-		GFF2573	0.17	-0.4
2,588,640	+		GFF2573	0.17	-1.0
2,588,640	+		GFF2573	0.17	-1.1
2,588,640	+		GFF2573	0.17	+0.4
2,588,640	+		GFF2573	0.17	-1.3
2,588,640	+		GFF2573	0.17	-0.9
2,588,641	+		GFF2573	0.17	+0.5
2,588,641	+		GFF2573	0.17	-1.0
2,588,641	+		GFF2573	0.17	-0.3
2,588,641	+		GFF2573	0.17	-1.0
2,588,648	-		GFF2573	0.18	-1.2
2,588,648	-		GFF2573	0.18	-0.7
2,588,649	-		GFF2573	0.18	-1.0
2,588,649	-		GFF2573	0.18	-0.9
2,588,649	-		GFF2573	0.18	-0.7
2,588,649	-		GFF2573	0.18	-0.7
2,588,649	-		GFF2573	0.18	-0.1
2,588,649	-		GFF2573	0.18	-1.1
2,588,649	-		GFF2573	0.18	-0.2
2,588,649	-		GFF2573	0.18	-0.5
2,588,649	-		GFF2573	0.18	-0.8
2,588,665	+		GFF2573	0.20	-1.6
2,588,671	+		GFF2573	0.21	-1.1
2,588,673	-		GFF2573	0.22	-0.2
2,588,690	-		GFF2573	0.24	+1.2
2,588,695	-		GFF2573	0.24	-0.5
2,588,699	+		GFF2573	0.25	-0.9
2,588,716	+		GFF2573	0.27	+0.0
2,588,716	+		GFF2573	0.27	-1.8
2,588,716	+		GFF2573	0.27	-1.4
2,588,716	+		GFF2573	0.27	-1.3
2,588,717	-		GFF2573	0.27	-2.9
2,588,724	-		GFF2573	0.28	-1.6
2,588,724	-		GFF2573	0.28	-0.3
2,588,728	+		GFF2573	0.29	+1.1
2,588,741	+		GFF2573	0.30	+0.5
2,588,741	+		GFF2573	0.30	-0.9
2,588,759	-		GFF2573	0.33	-0.7
2,588,763	+		GFF2573	0.33	-0.9
2,588,766	-		GFF2573	0.34	-1.6
2,588,780	+		GFF2573	0.36	-0.7
2,588,786	+		GFF2573	0.36	-1.0
2,588,786	+		GFF2573	0.36	-0.4
2,588,786	+		GFF2573	0.36	-2.1
2,588,786	+		GFF2573	0.36	-0.4
2,588,786	+		GFF2573	0.36	-1.3
2,588,786	+		GFF2573	0.36	-1.5
2,588,794	-		GFF2573	0.37	-1.3
2,588,794	-		GFF2573	0.37	+0.2
2,588,794	-		GFF2573	0.37	-0.8
2,588,794	-		GFF2573	0.37	-0.3
2,588,794	-		GFF2573	0.37	+0.1
2,588,794	-		GFF2573	0.37	-1.6
2,588,794	-		GFF2573	0.37	-1.3
2,588,794	-		GFF2573	0.37	-0.2
2,588,794	-		GFF2573	0.37	-1.2
2,588,794	-		GFF2573	0.37	-0.2
2,588,794	-		GFF2573	0.37	-1.4
2,588,794	-		GFF2573	0.37	-0.1
2,588,794	-		GFF2573	0.37	-0.8
2,588,794	-		GFF2573	0.37	-1.4
2,588,794	-		GFF2573	0.37	-0.7
2,588,794	-		GFF2573	0.37	-1.4
2,588,796	+		GFF2573	0.38	-0.3
2,588,796	+		GFF2573	0.38	-0.2
2,588,796	+		GFF2573	0.38	-1.2
2,588,796	+		GFF2573	0.38	-0.1
2,588,796	+		GFF2573	0.38	+0.3
2,588,796	+		GFF2573	0.38	-0.8
2,588,796	+		GFF2573	0.38	+0.1
2,588,799	+		GFF2573	0.38	-0.4
2,588,804	-		GFF2573	0.39	-1.8
2,588,804	-		GFF2573	0.39	-0.5
2,588,833	+		GFF2573	0.43	-0.4
2,588,879	-		GFF2573	0.49	-0.4
2,588,908	+		GFF2573	0.52	-0.9
2,588,925	+		GFF2573	0.55	-0.2
2,588,925	+		GFF2573	0.55	-0.1
2,588,938	+		GFF2573	0.56	-1.9
2,588,953	-		GFF2573	0.58	-0.6
2,588,964	-		GFF2573	0.60	-2.4
2,588,964	-		GFF2573	0.60	-0.5
2,588,965	+		GFF2573	0.60	+0.6
2,588,981	+		GFF2573	0.62	+0.6
2,588,982	+		GFF2573	0.62	+0.8
2,588,991	+		GFF2573	0.63	-1.3
2,589,006	+		GFF2573	0.65	-0.7
2,589,011	-		GFF2573	0.66	-0.5
2,589,016	-		GFF2573	0.67	-2.0
2,589,018	+		GFF2573	0.67	+1.7
2,589,023	+		GFF2573	0.67	-2.1
2,589,028	+		GFF2573	0.68	-0.7
2,589,045	-		GFF2573	0.70	-0.6
2,589,045	-		GFF2573	0.70	-0.6
2,589,045	-		GFF2573	0.70	-1.6
2,589,045	-		GFF2573	0.70	-0.7
2,589,049	+		GFF2573	0.71	+0.2
2,589,100	+		GFF2573	0.78	-1.1
2,589,108	-		GFF2573	0.79	-0.8
2,589,110	+		GFF2573	0.79	-1.1
2,589,111	+		GFF2573	0.79	-1.3
2,589,111	+		GFF2573	0.79	+0.7
2,589,118	-		GFF2573	0.80	-1.7
2,589,119	-		GFF2573	0.80	-2.0
2,589,126	+		GFF2573	0.81	-1.7
2,589,139	-		GFF2573	0.83	+0.4
2,589,168	+		GFF2573	0.86	-1.7
2,589,176	+		GFF2573	0.88	-0.5
2,589,184	-		GFF2573	0.89	-0.1
2,589,194	+				-0.8
2,589,210	+				-1.9
2,589,218	-				-0.3
2,589,277	+				-2.3
2,589,277	+				-1.0
2,589,285	-				-0.5
2,589,287	+				-0.9
2,589,295	-		GFF2574	0.12	+1.6
2,589,295	-		GFF2574	0.12	-1.8
2,589,295	-		GFF2574	0.12	+0.4
2,589,295	-		GFF2574	0.12	-1.0
2,589,295	-		GFF2574	0.12	-0.6
2,589,298	+		GFF2574	0.14	+0.0
2,589,329	-		GFF2574	0.28	-1.3
2,589,344	+		GFF2574	0.34	-1.0
2,589,344	-		GFF2574	0.34	-0.6
2,589,344	-		GFF2574	0.34	+0.1
2,589,372	+		GFF2574	0.47	-1.4
2,589,375	-		GFF2574	0.48	-0.5
2,589,380	+		GFF2574	0.50	-0.5
2,589,380	+		GFF2574	0.50	-1.2
2,589,388	-		GFF2574	0.54	+0.4
2,589,388	-		GFF2574	0.54	+0.4
2,589,388	-		GFF2574	0.54	-0.5
2,589,411	-		GFF2574	0.64	-0.3
2,589,420	+		GFF2574	0.68	-1.4
2,589,457	-		GFF2574	0.84	+0.1
2,589,473	-				+0.5
2,589,488	-				-0.5
2,589,493	+				+0.8
2,589,493	+				+1.6
2,589,501	-				-2.0
2,589,501	-				-1.5
2,589,501	-				-0.2
2,589,501	-				-0.8
2,589,501	-				-1.4
2,589,501	-				-0.8
2,589,503	-				+0.7
2,589,521	+				-1.5
2,589,527	+				+0.5
2,589,527	+				-0.0
2,589,527	+				-0.2
2,589,527	+				-0.8
2,589,527	+				+0.0
2,589,527	+				-1.2
2,589,527	+				-0.7
2,589,527	+				-0.8
2,589,527	+				-1.8
2,589,529	-				+1.4
2,589,529	-				+0.3
2,589,529	-				-0.3
2,589,529	-				-1.0
2,589,532	+				-0.0
2,589,532	+				-1.6
2,589,532	+				-0.5
2,589,532	+				-0.3
2,589,535	-				-1.2
2,589,535	-				-1.3
2,589,535	-				+1.5
2,589,535	-				-1.6
2,589,535	-				-1.1
2,589,535	-				-0.5
2,589,535	-				-0.7
2,589,535	-				-1.2
2,589,535	-				+1.3
2,589,540	-				+0.6
2,589,540	-				+0.8
2,589,540	-				-1.0
2,589,540	-				-0.6
2,589,544	+				-0.5
2,589,544	+				+1.3
2,589,545	-				-0.9
2,589,552	-				-0.9
2,589,552	-				-1.3
2,589,552	-				-0.4
2,589,568	+				-0.9
2,589,568	+				+1.0
2,589,568	+				-1.5
2,589,568	+				-1.0
2,589,576	-				-0.0
2,589,581	+				+0.9
2,589,582	-				+0.0
2,589,589	-				-0.6
2,589,630	+				-0.9
2,589,643	+				+1.4
2,589,651	-				-0.6
2,589,651	-				-0.5
2,589,651	-				+0.4
2,589,651	-				+1.6
2,589,651	-				-0.1
2,590,970	-				-0.7
2,590,991	-				-0.6
2,591,028	-				-0.9
2,591,041	-				-1.3
2,591,041	-				-0.4
2,591,079	+				-1.7
2,591,079	+				-0.8
2,591,084	+				-0.7
2,591,084	+				-0.9
2,591,084	+				-0.8
2,591,084	+				-0.4
2,591,084	+				+0.7
2,591,084	+				-0.4
2,591,084	+				-0.9
2,591,084	+				-1.0
2,591,084	+				+0.4
2,591,092	-				+0.3
2,591,092	-				-0.8
2,591,092	-				-0.1
2,591,092	-				+0.0
2,591,092	-				-0.9
2,591,092	-				-0.3
2,591,098	+				+0.7
2,591,098	+				-1.3
2,591,104	+				-0.1
2,591,106	-				-1.4
2,591,106	-				+0.7
2,591,106	-				-0.5
2,591,117	-				+0.6
2,591,117	-				-0.1
2,591,143	-				+0.6
2,591,146	+				-1.8
2,591,146	+				+1.5
2,591,149	-				-0.3
2,591,154	-				-0.6
2,591,154	-				-0.3
2,591,154	-				-0.2
2,591,154	-				+0.2
2,591,154	-				-0.1
2,591,156	+				-0.5
2,591,160	+				-1.0
2,591,160	+				+0.6
2,591,164	-				-1.3
2,591,165	+				-1.5
2,591,165	+				-0.1
2,591,165	+				+1.3
2,591,165	+				-0.2
2,591,168	-				-0.8
2,591,173	+				+0.6
2,591,173	-				-0.6
2,591,173	-				-1.7
2,591,186	-				-0.9
2,591,187	-				-0.7
2,591,188	+				-0.9
2,591,194	+		GFF2576	0.10	-0.4
2,591,194	+		GFF2576	0.10	+0.5
2,591,194	+		GFF2576	0.10	-1.7
2,591,196	-		GFF2576	0.11	-1.4
2,591,202	-		GFF2576	0.11	-0.1
2,591,202	-		GFF2576	0.11	-0.1
2,591,217	+		GFF2576	0.12	-1.0
2,591,226	-		GFF2576	0.13	-2.2
2,591,241	+		GFF2576	0.14	-0.4
2,591,252	+		GFF2576	0.15	-0.1
2,591,252	+		GFF2576	0.15	-1.1
2,591,275	+		GFF2576	0.16	-0.2
2,591,280	+		GFF2576	0.17	+1.3
2,591,280	+		GFF2576	0.17	-1.4
2,591,280	+		GFF2576	0.17	+0.0
2,591,281	-		GFF2576	0.17	-1.1
2,591,281	-		GFF2576	0.17	-0.6
2,591,281	-		GFF2576	0.17	+1.2
2,591,283	+		GFF2576	0.17	+0.3
2,591,285	+		GFF2576	0.17	+1.0
2,591,285	+		GFF2576	0.17	-0.5
2,591,287	+		GFF2576	0.17	-0.4
2,591,287	+		GFF2576	0.17	-1.3
2,591,287	+		GFF2576	0.17	-1.3
2,591,288	-		GFF2576	0.17	-0.5
2,591,293	-		GFF2576	0.18	-0.2
2,591,295	-		GFF2576	0.18	+0.1
2,591,295	-		GFF2576	0.18	-0.5
2,591,295	-		GFF2576	0.18	+0.0
2,591,295	-		GFF2576	0.18	+0.5
2,591,297	+		GFF2576	0.18	-0.4
2,591,297	+		GFF2576	0.18	+0.9
2,591,297	+		GFF2576	0.18	-0.3
2,591,297	+		GFF2576	0.18	+0.0
2,591,297	+		GFF2576	0.18	-0.9
2,591,297	+		GFF2576	0.18	-0.1
2,591,297	+		GFF2576	0.18	-1.5
2,591,305	+		GFF2576	0.18	+0.5
2,591,305	+		GFF2576	0.18	-1.1
2,591,305	+		GFF2576	0.18	+0.8
2,591,305	+		GFF2576	0.18	-1.2
2,591,305	+		GFF2576	0.18	+0.9
2,591,305	-		GFF2576	0.18	-1.4
2,591,305	-		GFF2576	0.18	+0.7
2,591,305	-		GFF2576	0.18	-1.2
2,591,305	-		GFF2576	0.18	-0.2
2,591,305	-		GFF2576	0.18	-0.3
2,591,305	-		GFF2576	0.18	+0.3
2,591,313	-		GFF2576	0.19	+0.9
2,591,313	-		GFF2576	0.19	-1.7
2,591,313	-		GFF2576	0.19	+0.0
2,591,313	-		GFF2576	0.19	+0.8
2,591,315	+		GFF2576	0.19	+0.4
2,591,340	+		GFF2576	0.21	-0.3
2,591,345	+		GFF2576	0.21	+0.2
2,591,348	-		GFF2576	0.22	-1.0
2,591,353	-		GFF2576	0.22	+1.4
2,591,353	-		GFF2576	0.22	-0.3
2,591,353	-		GFF2576	0.22	-0.7
2,591,367	+		GFF2576	0.23	-0.6
2,591,378	+		GFF2576	0.24	-0.5
2,591,404	+		GFF2576	0.26	-0.7
2,591,406	-		GFF2576	0.26	+0.3
2,591,410	+		GFF2576	0.26	-0.3
2,591,410	+		GFF2576	0.26	-0.4
2,591,420	+		GFF2576	0.27	-0.8
2,591,466	+		GFF2576	0.30	+0.6
2,591,466	+		GFF2576	0.30	+0.3
2,591,466	+		GFF2576	0.30	-0.1
2,591,474	-		GFF2576	0.31	+0.6
2,591,474	-		GFF2576	0.31	-1.3
2,591,489	+		GFF2576	0.32	-1.8
2,591,489	+		GFF2576	0.32	+0.8
2,591,489	+		GFF2576	0.32	-1.7
2,591,497	-		GFF2576	0.33	-0.2
2,591,497	-		GFF2576	0.33	-2.5
2,591,497	-		GFF2576	0.33	-1.9
2,591,497	-		GFF2576	0.33	+0.9
2,591,497	-		GFF2576	0.33	-0.2
2,591,497	-		GFF2576	0.33	-0.3
2,591,497	-		GFF2576	0.33	+0.5
2,591,508	+		GFF2576	0.33	-0.1
2,591,516	-		GFF2576	0.34	-0.5
2,591,516	-		GFF2576	0.34	-0.4
2,591,530	+		GFF2576	0.35	-0.6
2,591,534	+		GFF2576	0.35	-0.6
2,591,535	+		GFF2576	0.35	+0.7
2,591,538	-		GFF2576	0.36	+0.5
2,591,538	-		GFF2576	0.36	-1.0
2,591,538	-		GFF2576	0.36	-0.5
2,591,543	-		GFF2576	0.36	+0.1
2,591,543	-		GFF2576	0.36	-1.1
2,591,543	-		GFF2576	0.36	-0.3
2,591,545	+		GFF2576	0.36	-1.4
2,591,545	+		GFF2576	0.36	+1.2
2,591,547	+		GFF2576	0.36	-0.9
2,591,547	+		GFF2576	0.36	-0.5
2,591,557	+		GFF2576	0.37	-1.3
2,591,565	-		GFF2576	0.38	-1.4
2,591,565	-		GFF2576	0.38	-0.2
2,591,565	-		GFF2576	0.38	+0.9
2,591,575	-		GFF2576	0.38	-0.7
2,591,575	-		GFF2576	0.38	-1.1
2,591,575	-		GFF2576	0.38	+0.1
2,591,575	-		GFF2576	0.38	+0.4
2,591,575	-		GFF2576	0.38	-0.8
2,591,575	-		GFF2576	0.38	-1.0
2,591,581	+		GFF2576	0.39	-0.4
2,591,585	+		GFF2576	0.39	+0.5
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2,591,816	+		GFF2576	0.56	-0.6
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2,591,954	+		GFF2576	0.66	-0.6