Strain Fitness in Sphingobium sp. HT1-2 around GFF1921

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,945,225	+		GFF1920	0.38	-2.8
1,945,225	+		GFF1920	0.38	-1.2
1,945,227	+		GFF1920	0.38	-1.3
1,945,235	-		GFF1920	0.38	-0.7
1,945,235	-		GFF1920	0.38	-1.3
1,945,242	+		GFF1920	0.39	-1.5
1,945,252	-		GFF1920	0.40	-0.1
1,945,312	+		GFF1920	0.43	-0.3
1,945,312	+		GFF1920	0.43	+0.3
1,945,312	+		GFF1920	0.43	-1.9
1,945,312	+		GFF1920	0.43	-2.2
1,945,312	+		GFF1920	0.43	-0.9
1,945,312	+		GFF1920	0.43	-0.3
1,945,312	+		GFF1920	0.43	+0.7
1,945,312	+		GFF1920	0.43	-0.6
1,945,319	-		GFF1920	0.44	-2.8
1,945,320	-		GFF1920	0.44	+0.3
1,945,320	-		GFF1920	0.44	-0.6
1,945,320	-		GFF1920	0.44	-0.2
1,945,320	-		GFF1920	0.44	-0.5
1,945,320	-		GFF1920	0.44	-0.2
1,945,320	-		GFF1920	0.44	-2.1
1,945,320	-		GFF1920	0.44	-0.1
1,945,320	-		GFF1920	0.44	+0.4
1,945,320	-		GFF1920	0.44	-0.1
1,945,320	-		GFF1920	0.44	-1.1
1,945,321	+		GFF1920	0.44	-1.4
1,945,322	+		GFF1920	0.44	-1.7
1,945,330	-		GFF1920	0.45	-0.7
1,945,334	-		GFF1920	0.45	-1.2
1,945,365	-		GFF1920	0.47	-1.8
1,945,378	+		GFF1920	0.48	-2.4
1,945,386	-		GFF1920	0.48	+1.9
1,945,386	-		GFF1920	0.48	-1.8
1,945,412	-		GFF1920	0.50	-0.5
1,945,418	-		GFF1920	0.50	+0.9
1,945,419	+		GFF1920	0.50	-2.3
1,945,427	-		GFF1920	0.51	-1.5
1,945,430	+		GFF1920	0.51	-1.0
1,945,433	-		GFF1920	0.51	-1.5
1,945,450	-		GFF1920	0.52	-0.8
1,945,453	+		GFF1920	0.52	-0.4
1,945,453	+		GFF1920	0.52	-0.7
1,945,463	+		GFF1920	0.53	-0.5
1,945,463	+		GFF1920	0.53	-1.5
1,945,463	+		GFF1920	0.53	+0.9
1,945,471	+		GFF1920	0.53	-1.3
1,945,471	+		GFF1920	0.53	-1.3
1,945,471	+		GFF1920	0.53	-1.7
1,945,471	+		GFF1920	0.53	-0.8
1,945,471	+		GFF1920	0.53	-0.4
1,945,471	+		GFF1920	0.53	-1.6
1,945,471	-		GFF1920	0.53	-0.5
1,945,471	-		GFF1920	0.53	-0.6
1,945,471	-		GFF1920	0.53	-1.0
1,945,478	+		GFF1920	0.54	-0.1
1,945,479	-		GFF1920	0.54	-1.7
1,945,479	-		GFF1920	0.54	-1.3
1,945,485	+		GFF1920	0.54	-1.1
1,945,491	-		GFF1920	0.55	-1.5
1,945,521	+		GFF1920	0.57	-1.2
1,945,566	+		GFF1920	0.60	-1.3
1,945,573	+		GFF1920	0.60	-1.2
1,945,585	-		GFF1920	0.61	-0.6
1,945,594	+		GFF1920	0.61	-0.8
1,945,612	-		GFF1920	0.62	-0.9
1,945,634	+		GFF1920	0.64	-1.9
1,945,642	-		GFF1920	0.64	+0.9
1,945,642	-		GFF1920	0.64	-0.8
1,945,703	-		GFF1920	0.68	-0.2
1,945,705	-		GFF1920	0.68	-0.7
1,945,722	-		GFF1920	0.69	-0.1
1,945,759	-		GFF1920	0.72	-1.8
1,945,772	+		GFF1920	0.73	-1.5
1,945,780	-		GFF1920	0.73	-0.6
1,945,784	+		GFF1920	0.73	-0.5
1,945,794	+		GFF1920	0.74	-2.7
1,945,794	+		GFF1920	0.74	-0.4
1,945,794	+		GFF1920	0.74	-1.1
1,945,794	+		GFF1920	0.74	-0.9
1,945,794	+		GFF1920	0.74	-0.4
1,945,802	-		GFF1920	0.75	-0.1
1,945,807	-		GFF1920	0.75	+0.7
1,945,807	-		GFF1920	0.75	-0.7
1,945,812	+		GFF1920	0.75	-1.1
1,945,840	-		GFF1920	0.77	-1.9
1,945,868	+		GFF1920	0.79	-1.9
1,945,868	+		GFF1920	0.79	-2.0
1,945,868	+		GFF1920	0.79	-1.1
1,945,880	+		GFF1920	0.80	-1.7
1,945,888	-		GFF1920	0.80	-0.3
1,945,900	+		GFF1920	0.81	-0.9
1,945,910	+		GFF1920	0.81	-0.7
1,945,910	+		GFF1920	0.81	-0.6
1,945,910	+		GFF1920	0.81	-1.8
1,945,918	-		GFF1920	0.82	+0.4
1,945,918	-		GFF1920	0.82	-0.6
1,945,929	+		GFF1920	0.83	-1.7
1,945,932	-		GFF1920	0.83	-1.2
1,945,932	-		GFF1920	0.83	-1.8
1,945,932	-		GFF1920	0.83	-1.7
1,945,937	-		GFF1920	0.83	+0.5
1,945,943	+		GFF1920	0.84	-1.0
1,945,948	+		GFF1920	0.84	-0.3
1,945,963	+		GFF1920	0.85	-0.3
1,945,969	-		GFF1920	0.85	-0.5
1,945,978	-		GFF1920	0.86	-2.4
1,945,986	-		GFF1920	0.86	+0.8
1,945,996	-		GFF1920	0.87	-1.2
1,945,996	-		GFF1920	0.87	-0.5
1,946,010	-		GFF1920	0.88	-0.2
1,946,033	-		GFF1920	0.89	-1.7
1,946,068	-				-1.6
1,946,148	-				-1.9
1,946,170	+				-0.1
1,946,170	-				-0.4
1,946,180	-				-0.2
1,946,185	+				-0.4
1,946,196	+				-0.2
1,946,196	+				-1.5
1,946,201	+				-0.5
1,946,204	-				-0.7
1,946,225	+				-0.7
1,946,242	+				-1.1
1,946,242	+				-0.5
1,946,248	+				-2.0
1,946,250	-				-0.4
1,946,250	-				-0.1
1,946,250	-				-0.6
1,946,268	+				-1.4
1,946,268	+				-0.9
1,946,276	-				-2.6
1,946,280	-				-0.5
1,946,301	+				-1.9
1,946,301	+				-1.1
1,946,301	+				-0.1
1,946,354	+		GFF1921	0.11	+1.3
1,946,365	-		GFF1921	0.12	-1.5
1,946,376	+		GFF1921	0.13	-2.5
1,946,381	+		GFF1921	0.13	-1.0
1,946,381	+		GFF1921	0.13	+0.4
1,946,382	+		GFF1921	0.14	+0.8
1,946,382	+		GFF1921	0.14	-0.2
1,946,382	+		GFF1921	0.14	-1.4
1,946,382	+		GFF1921	0.14	+0.6
1,946,382	+		GFF1921	0.14	-1.5
1,946,382	+		GFF1921	0.14	-0.3
1,946,384	-		GFF1921	0.14	-2.4
1,946,384	-		GFF1921	0.14	-0.9
1,946,384	-		GFF1921	0.14	-2.2
1,946,384	-		GFF1921	0.14	-0.7
1,946,389	-		GFF1921	0.14	-0.8
1,946,389	-		GFF1921	0.14	-1.2
1,946,389	-		GFF1921	0.14	-1.2
1,946,390	-		GFF1921	0.14	-1.0
1,946,390	-		GFF1921	0.14	-1.8
1,946,390	-		GFF1921	0.14	-1.7
1,946,390	-		GFF1921	0.14	-2.6
1,946,390	-		GFF1921	0.14	-0.7
1,946,390	-		GFF1921	0.14	-1.8
1,946,390	-		GFF1921	0.14	-1.3
1,946,391	+		GFF1921	0.14	-0.9
1,946,394	-		GFF1921	0.14	-0.2
1,946,423	-		GFF1921	0.17	-1.0
1,946,437	+		GFF1921	0.18	-2.3
1,946,439	+		GFF1921	0.18	-1.5
1,946,447	-		GFF1921	0.18	-1.9
1,946,469	+		GFF1921	0.20	-0.5
1,946,479	+		GFF1921	0.21	-1.2
1,946,480	+		GFF1921	0.21	-0.8
1,946,488	-		GFF1921	0.21	-1.3
1,946,488	-		GFF1921	0.21	-2.6
1,946,507	-		GFF1921	0.23	-0.0
1,946,508	+		GFF1921	0.23	-1.1
1,946,511	-		GFF1921	0.23	+1.6
1,946,543	-		GFF1921	0.25	-1.1
1,946,554	+		GFF1921	0.26	-1.2
1,946,560	+		GFF1921	0.27	-1.4
1,946,573	-		GFF1921	0.28	-0.2
1,946,594	+		GFF1921	0.29	-2.7
1,946,605	+		GFF1921	0.30	-1.8
1,946,612	+		GFF1921	0.30	-1.0
1,946,631	+		GFF1921	0.32	-1.3
1,946,634	-		GFF1921	0.32	-0.1
1,946,639	+		GFF1921	0.32	-1.5
1,946,639	-		GFF1921	0.32	-1.2
1,946,657	+		GFF1921	0.34	-1.1
1,946,683	-		GFF1921	0.36	-0.7
1,946,714	-		GFF1921	0.38	+0.7
1,946,714	-		GFF1921	0.38	-2.0
1,946,716	+		GFF1921	0.38	-1.1
1,946,716	+		GFF1921	0.38	-0.4
1,946,716	+		GFF1921	0.38	-0.5
1,946,716	+		GFF1921	0.38	-2.2
1,946,716	+		GFF1921	0.38	-0.7
1,946,716	+		GFF1921	0.38	-1.1
1,946,716	+		GFF1921	0.38	-2.0
1,946,716	+		GFF1921	0.38	-1.3
1,946,716	+		GFF1921	0.38	-0.4
1,946,716	+		GFF1921	0.38	-1.9
1,946,722	+		GFF1921	0.39	-0.7
1,946,724	-		GFF1921	0.39	+0.9
1,946,724	-		GFF1921	0.39	-2.6
1,946,724	-		GFF1921	0.39	+0.1
1,946,724	-		GFF1921	0.39	-0.1
1,946,724	-		GFF1921	0.39	-0.2
1,946,724	-		GFF1921	0.39	-1.5
1,946,724	-		GFF1921	0.39	-1.7
1,946,730	-		GFF1921	0.39	-1.0
1,946,743	+		GFF1921	0.40	-0.8
1,946,743	+		GFF1921	0.40	-2.2
1,946,746	-		GFF1921	0.40	-1.5
1,946,751	+		GFF1921	0.41	-1.5
1,946,751	-		GFF1921	0.41	-1.8
1,946,762	+		GFF1921	0.42	-1.5
1,946,762	+		GFF1921	0.42	-2.4
1,946,769	-		GFF1921	0.42	-0.4
1,946,770	-		GFF1921	0.42	-1.7
1,946,797	-		GFF1921	0.44	-1.3
1,946,803	-		GFF1921	0.45	-1.8
1,946,808	+		GFF1921	0.45	+0.9
1,946,810	-		GFF1921	0.45	-0.6
1,946,838	+		GFF1921	0.47	-1.5
1,946,838	+		GFF1921	0.47	-1.9
1,946,851	-		GFF1921	0.48	-0.9
1,946,871	+		GFF1921	0.50	-1.0
1,946,888	+		GFF1921	0.51	-0.6
1,946,890	+		GFF1921	0.51	-1.1
1,946,890	+		GFF1921	0.51	-0.4
1,946,890	+		GFF1921	0.51	-2.2
1,946,896	-		GFF1921	0.51	+0.3
1,946,903	+		GFF1921	0.52	-1.7
1,946,911	+		GFF1921	0.52	-1.0
1,946,919	-		GFF1921	0.53	-0.6
1,946,936	+		GFF1921	0.54	-0.2
1,946,936	+		GFF1921	0.54	+0.6
1,946,936	+		GFF1921	0.54	-0.9
1,946,944	-		GFF1921	0.55	-0.9
1,946,944	-		GFF1921	0.55	-1.3
1,946,945	-		GFF1921	0.55	-0.7
1,946,995	-		GFF1921	0.59	-0.5
1,947,007	+		GFF1921	0.60	-0.2
1,947,039	+		GFF1921	0.62	-0.8
1,947,047	-		GFF1921	0.62	-1.3
1,947,055	+		GFF1921	0.63	-1.2
1,947,055	+		GFF1921	0.63	-1.2
1,947,075	+		GFF1921	0.65	-1.0
1,947,075	+		GFF1921	0.65	-0.1
1,947,075	+		GFF1921	0.65	-1.1
1,947,078	-		GFF1921	0.65	-1.1
1,947,078	-		GFF1921	0.65	-0.3
1,947,080	+		GFF1921	0.65	-1.2
1,947,083	-		GFF1921	0.65	-0.5
1,947,102	+		GFF1921	0.67	+0.1
1,947,127	+		GFF1921	0.68	-1.4
1,947,127	+		GFF1921	0.68	-1.5
1,947,127	+		GFF1921	0.68	-2.0
1,947,135	-		GFF1921	0.69	-1.9
1,947,135	-		GFF1921	0.69	-2.2
1,947,135	-		GFF1921	0.69	-0.3
1,947,163	-		GFF1921	0.71	-2.3
1,947,180	+		GFF1921	0.72	-2.2
1,947,180	-		GFF1921	0.72	-0.4
1,947,184	+		GFF1921	0.73	-1.4
1,947,201	-		GFF1921	0.74	-1.3
1,947,233	-		GFF1921	0.76	-1.0
1,947,266	-		GFF1921	0.79	-1.4
1,947,275	-		GFF1921	0.79	-0.5
1,947,305	+		GFF1921	0.81	-1.1
1,947,348	+		GFF1921	0.85	-1.4
1,947,376	+		GFF1921	0.87	-2.5
1,947,384	-		GFF1921	0.87	-1.6
1,947,395	-		GFF1921	0.88	-1.5
1,947,422	+				-2.0
1,947,449	-				-1.9
1,947,471	+				-0.5
1,947,479	-				-0.2
1,947,479	-				-2.0
1,947,490	-				-0.7
1,947,533	+				-0.7
1,947,539	+				-0.9
1,947,541	+				-0.7
1,947,541	+				-1.8
1,947,541	+				+0.6
1,947,549	-				+1.6
1,947,549	-				-0.8
1,947,549	-				-1.1
1,947,549	-				-1.5
1,947,549	-				-2.0
1,947,549	-				-1.3
1,947,572	-				-0.8
1,947,582	+				-1.0
1,947,584	-				-0.3
1,947,590	-				-0.9
1,947,597	+				-1.2
1,947,607	+				-0.6
1,947,607	+				+0.4
1,947,607	+				-0.7
1,947,607	+				-1.9
1,947,615	-				-0.4
1,947,615	-				-0.7
1,947,618	+				-0.5
1,947,623	+				-0.3
1,947,629	-				-0.0
1,947,629	-				-0.8
1,947,649	+				-0.1
1,947,649	+				+0.1
1,947,649	+				-1.4
1,947,649	+				-0.3
1,947,649	+				+0.2
1,947,649	+				-1.3
1,947,649	+				-0.4
1,947,649	+				+0.2
1,947,649	+				-0.5
1,947,649	+				+0.5
1,947,649	+				+0.1
1,947,649	+				+1.0
1,947,649	+				-0.3
1,947,649	+				-1.5
1,947,649	+				-1.1
1,947,650	+				-0.3
1,947,650	+				+0.1
1,947,657	-				-1.6
1,947,657	-				+0.3
1,947,657	-				-0.8
1,947,657	-				-0.0
1,947,657	-				-0.1
1,947,657	-				-0.3
1,947,657	-				+1.0
1,947,657	-				+1.9
1,947,657	-				-0.0
1,947,657	-				-0.1
1,947,657	-				-0.4
1,947,657	-				-1.5
1,947,657	-				+0.8
1,947,657	-				-0.9
1,947,657	-				-1.5
1,947,657	-				-0.1
1,947,657	-				-2.4
1,947,657	-				-0.7
1,947,657	-				-0.3
1,947,657	-				+0.4
1,947,657	-				-0.7
1,947,657	-				-0.5
1,947,658	-				-0.9
1,947,658	-				+0.2
1,947,706	-				-0.1
1,947,735	+		GFF1922	0.13	+0.8
1,947,748	+		GFF1922	0.16	-0.1
1,947,750	+		GFF1922	0.17	-1.4
1,947,797	+		GFF1922	0.29	-0.6
1,947,799	+		GFF1922	0.30	-0.3
1,947,799	+		GFF1922	0.30	-2.1
1,947,805	-		GFF1922	0.31	-0.5
1,947,815	-		GFF1922	0.34	-3.2
1,947,861	+		GFF1922	0.47	-3.0
1,947,869	-		GFF1922	0.49	+0.2
1,947,871	-		GFF1922	0.49	-0.9
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