Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5267 and GFF5268 are separated by 243 nucleotides GFF5268 and GFF5269 are separated by 433 nucleotides GFF5269 and GFF5270 are separated by 59 nucleotides GFF5270 and GFF5271 are separated by 349 nucleotides
GFF5267 - Transposase, at 5,256,403 to 5,257,917
GFF5267
GFF5268 - hypothetical protein, at 5,258,161 to 5,258,385
GFF5268
GFF5269 - Transposase, at 5,258,819 to 5,259,031
GFF5269
GFF5270 - Mobile element protein, at 5,259,091 to 5,259,177
GFF5270
GFF5271 - Transcriptional regulator, LacI family, at 5,259,527 to 5,260,399
GFF5271
Position (kb) 5258
5259
5260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5257.821 kb on - strand at 5257.839 kb on + strand at 5257.839 kb on + strand at 5257.839 kb on + strand at 5257.839 kb on + strand at 5257.839 kb on + strand at 5257.839 kb on + strand at 5257.839 kb on + strand at 5257.847 kb on - strand at 5257.847 kb on - strand at 5257.862 kb on + strand at 5257.862 kb on + strand at 5257.862 kb on + strand at 5257.870 kb on - strand at 5257.870 kb on - strand at 5257.885 kb on - strand at 5257.897 kb on - strand at 5257.897 kb on - strand at 5258.006 kb on + strand at 5258.015 kb on + strand at 5258.023 kb on + strand at 5258.038 kb on + strand at 5258.038 kb on + strand at 5258.044 kb on + strand at 5258.044 kb on + strand at 5258.044 kb on + strand at 5258.044 kb on + strand at 5258.046 kb on - strand at 5258.052 kb on - strand at 5258.060 kb on - strand at 5258.065 kb on + strand at 5258.070 kb on + strand at 5258.070 kb on + strand at 5258.073 kb on - strand at 5258.075 kb on - strand at 5258.085 kb on - strand at 5258.092 kb on + strand at 5258.092 kb on + strand at 5258.100 kb on - strand at 5258.111 kb on + strand at 5258.111 kb on + strand at 5258.125 kb on + strand at 5258.133 kb on - strand at 5258.133 kb on - strand at 5258.134 kb on + strand at 5258.134 kb on - strand at 5258.142 kb on - strand at 5258.142 kb on - strand at 5258.143 kb on - strand at 5258.143 kb on - strand at 5258.143 kb on - strand at 5258.143 kb on - strand at 5258.145 kb on + strand at 5258.145 kb on + strand at 5258.160 kb on - strand at 5258.166 kb on - strand at 5258.188 kb on - strand, within GFF5268 at 5258.197 kb on + strand, within GFF5268 at 5258.205 kb on - strand, within GFF5268 at 5258.250 kb on - strand, within GFF5268 at 5258.262 kb on + strand, within GFF5268 at 5258.262 kb on + strand, within GFF5268 at 5258.266 kb on - strand, within GFF5268 at 5258.272 kb on + strand, within GFF5268 at 5258.280 kb on - strand, within GFF5268 at 5258.280 kb on - strand, within GFF5268 at 5258.280 kb on - strand, within GFF5268 at 5258.289 kb on + strand, within GFF5268 at 5258.289 kb on + strand, within GFF5268 at 5258.297 kb on - strand, within GFF5268 at 5258.305 kb on + strand, within GFF5268 at 5258.305 kb on + strand, within GFF5268 at 5258.312 kb on + strand, within GFF5268 at 5258.330 kb on - strand, within GFF5268 at 5258.330 kb on - strand, within GFF5268 at 5258.334 kb on + strand, within GFF5268 at 5258.335 kb on + strand, within GFF5268 at 5258.342 kb on - strand, within GFF5268 at 5258.342 kb on - strand, within GFF5268 at 5258.343 kb on - strand, within GFF5268 at 5258.356 kb on - strand, within GFF5268 at 5258.356 kb on - strand, within GFF5268 at 5258.356 kb on - strand, within GFF5268 at 5258.366 kb on - strand at 5258.372 kb on + strand at 5258.372 kb on + strand at 5258.372 kb on + strand at 5258.377 kb on + strand at 5258.380 kb on - strand at 5258.380 kb on - strand at 5258.382 kb on + strand at 5258.382 kb on + strand at 5258.385 kb on - strand at 5258.385 kb on - strand at 5258.386 kb on - strand at 5258.386 kb on - strand at 5258.390 kb on - strand at 5258.398 kb on - strand at 5258.398 kb on - strand at 5258.402 kb on + strand at 5258.402 kb on + strand at 5258.402 kb on + strand at 5258.402 kb on + strand at 5258.402 kb on + strand at 5258.408 kb on - strand at 5258.410 kb on - strand at 5258.410 kb on - strand at 5258.410 kb on - strand at 5258.410 kb on - strand at 5258.410 kb on - strand at 5258.441 kb on - strand at 5258.445 kb on + strand at 5258.446 kb on + strand at 5258.446 kb on - strand at 5258.466 kb on + strand at 5258.483 kb on + strand at 5258.498 kb on - strand at 5258.520 kb on + strand at 5258.520 kb on + strand at 5258.520 kb on + strand at 5258.523 kb on - strand at 5258.525 kb on + strand at 5258.525 kb on + strand at 5258.533 kb on - strand at 5258.571 kb on - strand at 5258.571 kb on - strand at 5258.572 kb on + strand at 5258.580 kb on - strand at 5258.596 kb on - strand at 5258.619 kb on + strand at 5258.627 kb on + strand at 5258.627 kb on + strand at 5258.627 kb on + strand at 5258.627 kb on - strand at 5258.635 kb on + strand at 5258.635 kb on + strand at 5258.635 kb on - strand at 5258.643 kb on - strand at 5258.643 kb on - strand at 5258.643 kb on - strand at 5258.645 kb on + strand at 5258.673 kb on + strand at 5258.673 kb on + strand at 5258.673 kb on + strand at 5258.681 kb on - strand at 5258.688 kb on - strand at 5258.704 kb on - strand at 5258.716 kb on - strand at 5258.718 kb on + strand at 5258.718 kb on + strand at 5258.759 kb on + strand at 5258.759 kb on - strand at 5258.761 kb on + strand at 5258.772 kb on - strand at 5258.779 kb on - strand at 5258.797 kb on - strand at 5258.798 kb on - strand at 5258.802 kb on - strand at 5259.016 kb on + strand at 5259.354 kb on + strand at 5259.354 kb on + strand at 5259.361 kb on + strand at 5259.366 kb on + strand at 5259.366 kb on + strand at 5259.386 kb on + strand at 5259.392 kb on - strand at 5259.394 kb on - strand at 5259.414 kb on + strand at 5259.427 kb on - strand at 5259.430 kb on + strand at 5259.433 kb on + strand at 5259.448 kb on + strand at 5259.448 kb on + strand at 5259.462 kb on + strand at 5259.462 kb on + strand at 5259.462 kb on + strand at 5259.462 kb on + strand at 5259.462 kb on + strand at 5259.470 kb on - strand at 5259.471 kb on + strand at 5259.471 kb on + strand at 5259.479 kb on - strand at 5259.479 kb on - strand at 5259.481 kb on + strand at 5259.481 kb on + strand at 5259.481 kb on + strand at 5259.481 kb on + strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.489 kb on - strand at 5259.499 kb on + strand at 5259.504 kb on + strand at 5259.504 kb on - strand at 5259.512 kb on - strand at 5259.512 kb on - strand at 5259.524 kb on + strand at 5259.525 kb on + strand at 5259.525 kb on - strand at 5259.526 kb on - strand at 5259.530 kb on + strand at 5259.532 kb on - strand at 5259.532 kb on - strand at 5259.538 kb on - strand at 5259.540 kb on + strand at 5259.545 kb on + strand at 5259.548 kb on - strand at 5259.548 kb on - strand at 5259.548 kb on - strand at 5259.550 kb on + strand at 5259.569 kb on - strand at 5259.578 kb on + strand at 5259.584 kb on + strand at 5259.584 kb on + strand at 5259.584 kb on + strand at 5259.584 kb on + strand at 5259.586 kb on + strand at 5259.586 kb on + strand at 5259.586 kb on - strand at 5259.587 kb on - strand at 5259.592 kb on - strand at 5259.592 kb on - strand at 5259.592 kb on - strand at 5259.592 kb on - strand at 5259.592 kb on - strand at 5259.594 kb on - strand at 5259.594 kb on - strand at 5259.594 kb on - strand at 5259.596 kb on + strand at 5259.596 kb on + strand at 5259.596 kb on + strand at 5259.596 kb on + strand at 5259.596 kb on + strand at 5259.596 kb on + strand at 5259.596 kb on + strand at 5259.602 kb on - strand at 5259.604 kb on - strand at 5259.604 kb on - strand at 5259.604 kb on - strand at 5259.633 kb on + strand, within GFF5271 at 5259.633 kb on + strand, within GFF5271 at 5259.633 kb on + strand, within GFF5271 at 5259.633 kb on + strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.641 kb on - strand, within GFF5271 at 5259.685 kb on + strand, within GFF5271 at 5259.689 kb on + strand, within GFF5271 at 5259.689 kb on + strand, within GFF5271 at 5259.692 kb on - strand, within GFF5271 at 5259.727 kb on + strand, within GFF5271 at 5259.751 kb on - strand, within GFF5271 at 5259.763 kb on + strand, within GFF5271 at 5259.764 kb on + strand, within GFF5271 at 5259.764 kb on + strand, within GFF5271 at 5259.764 kb on + strand, within GFF5271 at 5259.764 kb on + strand, within GFF5271 at 5259.771 kb on - strand, within GFF5271 at 5259.772 kb on - strand, within GFF5271 at 5259.772 kb on - strand, within GFF5271 at 5259.772 kb on - strand, within GFF5271 at 5259.779 kb on + strand, within GFF5271 at 5259.802 kb on + strand, within GFF5271 at 5259.810 kb on - strand, within GFF5271 at 5259.810 kb on - strand, within GFF5271 at 5259.810 kb on - strand, within GFF5271 at 5259.810 kb on - strand, within GFF5271 at 5259.810 kb on - strand, within GFF5271 at 5259.810 kb on - strand, within GFF5271 at 5259.815 kb on - strand, within GFF5271 at 5259.824 kb on + strand, within GFF5271 at 5259.826 kb on - strand, within GFF5271 at 5259.832 kb on - strand, within GFF5271 at 5259.832 kb on - strand, within GFF5271 at 5259.832 kb on - strand, within GFF5271 at 5259.852 kb on + strand, within GFF5271 at 5259.875 kb on - strand, within GFF5271 at 5259.880 kb on - strand, within GFF5271 at 5259.890 kb on - strand, within GFF5271 at 5259.909 kb on + strand, within GFF5271 at 5259.909 kb on - strand, within GFF5271 at 5259.939 kb on - strand, within GFF5271 at 5259.957 kb on + strand, within GFF5271 at 5259.963 kb on + strand, within GFF5271 at 5259.985 kb on + strand, within GFF5271 at 5259.985 kb on + strand, within GFF5271 at 5259.990 kb on + strand, within GFF5271 at 5259.993 kb on - strand, within GFF5271 at 5259.993 kb on - strand, within GFF5271 at 5260.019 kb on + strand, within GFF5271 at 5260.026 kb on - strand, within GFF5271 at 5260.027 kb on - strand, within GFF5271
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 5,257,821 - -1.4 5,257,839 + -1.5 5,257,839 + -0.8 5,257,839 + -0.3 5,257,839 + +0.9 5,257,839 + -0.9 5,257,839 + -1.1 5,257,839 + -1.7 5,257,847 - +0.5 5,257,847 - +0.1 5,257,862 + +0.4 5,257,862 + -1.6 5,257,862 + -1.5 5,257,870 - +0.2 5,257,870 - -1.3 5,257,885 - -0.8 5,257,897 - -0.9 5,257,897 - -0.8 5,258,006 + -0.8 5,258,015 + -1.9 5,258,023 + -0.9 5,258,038 + -0.0 5,258,038 + -0.3 5,258,044 + -1.6 5,258,044 + -0.4 5,258,044 + -1.5 5,258,044 + -0.2 5,258,046 - -1.0 5,258,052 - +0.2 5,258,060 - -0.9 5,258,065 + -2.1 5,258,070 + -0.2 5,258,070 + -0.4 5,258,073 - -0.8 5,258,075 - +0.0 5,258,085 - -2.2 5,258,092 + -0.1 5,258,092 + -1.0 5,258,100 - -1.6 5,258,111 + -1.8 5,258,111 + -0.3 5,258,125 + +1.6 5,258,133 - +0.1 5,258,133 - -1.5 5,258,134 + -0.8 5,258,134 - -1.2 5,258,142 - -2.3 5,258,142 - +0.9 5,258,143 - +1.3 5,258,143 - -0.4 5,258,143 - -1.4 5,258,143 - -1.3 5,258,145 + -0.4 5,258,145 + -0.7 5,258,160 - +0.7 5,258,166 - -1.0 5,258,188 - GFF5268 0.12 -2.6 5,258,197 + GFF5268 0.16 +0.9 5,258,205 - GFF5268 0.20 -0.6 5,258,250 - GFF5268 0.40 -0.2 5,258,262 + GFF5268 0.45 +0.3 5,258,262 + GFF5268 0.45 -0.9 5,258,266 - GFF5268 0.47 -1.3 5,258,272 + GFF5268 0.49 -1.5 5,258,280 - GFF5268 0.53 -1.8 5,258,280 - GFF5268 0.53 -2.3 5,258,280 - GFF5268 0.53 +0.9 5,258,289 + GFF5268 0.57 -0.9 5,258,289 + GFF5268 0.57 -2.1 5,258,297 - GFF5268 0.60 -1.9 5,258,305 + GFF5268 0.64 +0.2 5,258,305 + GFF5268 0.64 -2.7 5,258,312 + GFF5268 0.67 -1.1 5,258,330 - GFF5268 0.75 -0.8 5,258,330 - GFF5268 0.75 -0.4 5,258,334 + GFF5268 0.77 -1.0 5,258,335 + GFF5268 0.77 +0.6 5,258,342 - GFF5268 0.80 +0.7 5,258,342 - GFF5268 0.80 +0.2 5,258,343 - GFF5268 0.81 -1.9 5,258,356 - GFF5268 0.87 +0.3 5,258,356 - GFF5268 0.87 +0.7 5,258,356 - GFF5268 0.87 -1.5 5,258,366 - -0.9 5,258,372 + +1.2 5,258,372 + +0.4 5,258,372 + -1.7 5,258,377 + +0.0 5,258,380 - -0.6 5,258,380 - +0.5 5,258,382 + +1.0 5,258,382 + -1.9 5,258,385 - +0.7 5,258,385 - -2.5 5,258,386 - -0.0 5,258,386 - -0.4 5,258,390 - +0.3 5,258,398 - +0.6 5,258,398 - -0.1 5,258,402 + -0.8 5,258,402 + -1.7 5,258,402 + -1.2 5,258,402 + -1.3 5,258,402 + -0.5 5,258,408 - -0.8 5,258,410 - -0.9 5,258,410 - +0.0 5,258,410 - -2.6 5,258,410 - -1.1 5,258,410 - -0.7 5,258,441 - -1.1 5,258,445 + -2.0 5,258,446 + -1.4 5,258,446 - -0.4 5,258,466 + -0.9 5,258,483 + -1.3 5,258,498 - -1.6 5,258,520 + -0.2 5,258,520 + +0.3 5,258,520 + -0.8 5,258,523 - -1.9 5,258,525 + -0.8 5,258,525 + -1.7 5,258,533 - -1.0 5,258,571 - -2.1 5,258,571 - -0.8 5,258,572 + -1.9 5,258,580 - -0.2 5,258,596 - +0.4 5,258,619 + +0.2 5,258,627 + -1.5 5,258,627 + +1.1 5,258,627 + +0.7 5,258,627 - +0.3 5,258,635 + +1.3 5,258,635 + +0.0 5,258,635 - -0.2 5,258,643 - -0.7 5,258,643 - -1.3 5,258,643 - -1.9 5,258,645 + +0.3 5,258,673 + -1.2 5,258,673 + -0.1 5,258,673 + -1.9 5,258,681 - -0.1 5,258,688 - -2.2 5,258,704 - -1.1 5,258,716 - -0.8 5,258,718 + +1.2 5,258,718 + -0.8 5,258,759 + +0.6 5,258,759 - -0.8 5,258,761 + -2.1 5,258,772 - -0.9 5,258,779 - -1.2 5,258,797 - -0.5 5,258,798 - -0.8 5,258,802 - -0.9 5,259,016 + -1.0 5,259,354 + -1.6 5,259,354 + +0.7 5,259,361 + -0.5 5,259,366 + -0.3 5,259,366 + -0.9 5,259,386 + +0.5 5,259,392 - +0.2 5,259,394 - +0.3 5,259,414 + -1.5 5,259,427 - -1.1 5,259,430 + -0.1 5,259,433 + -0.8 5,259,448 + +0.1 5,259,448 + -1.4 5,259,462 + +1.3 5,259,462 + -0.7 5,259,462 + +0.2 5,259,462 + -0.8 5,259,462 + -0.1 5,259,470 - -0.3 5,259,471 + +0.3 5,259,471 + +0.3 5,259,479 - -1.1 5,259,479 - +2.6 5,259,481 + -0.4 5,259,481 + +1.2 5,259,481 + -1.0 5,259,481 + -1.0 5,259,489 - +0.3 5,259,489 - -0.0 5,259,489 - -0.5 5,259,489 - +0.9 5,259,489 - -0.9 5,259,489 - +0.9 5,259,489 - -0.8 5,259,489 - -1.3 5,259,499 + -1.5 5,259,504 + -0.4 5,259,504 - +1.1 5,259,512 - -0.0 5,259,512 - -0.1 5,259,524 + +0.2 5,259,525 + -0.2 5,259,525 - -0.0 5,259,526 - -1.6 5,259,530 + -0.3 5,259,532 - +0.3 5,259,532 - +0.7 5,259,538 - -0.7 5,259,540 + -0.5 5,259,545 + +1.0 5,259,548 - +0.8 5,259,548 - -0.8 5,259,548 - +1.7 5,259,550 + -1.0 5,259,569 - -0.0 5,259,578 + +0.0 5,259,584 + -1.6 5,259,584 + -0.4 5,259,584 + -2.2 5,259,584 + +1.3 5,259,586 + -2.0 5,259,586 + +0.3 5,259,586 - +0.8 5,259,587 - +0.2 5,259,592 - -0.3 5,259,592 - -1.5 5,259,592 - -0.5 5,259,592 - +1.2 5,259,592 - -0.2 5,259,594 - +0.2 5,259,594 - +0.3 5,259,594 - +0.7 5,259,596 + -1.1 5,259,596 + -0.3 5,259,596 + -0.8 5,259,596 + -0.0 5,259,596 + +0.8 5,259,596 + -0.4 5,259,596 + -2.1 5,259,602 - -1.4 5,259,604 - -0.0 5,259,604 - -0.7 5,259,604 - -0.9 5,259,633 + GFF5271 0.12 -0.1 5,259,633 + GFF5271 0.12 -2.2 5,259,633 + GFF5271 0.12 -0.9 5,259,633 + GFF5271 0.12 -0.9 5,259,641 - GFF5271 0.13 -1.3 5,259,641 - GFF5271 0.13 +0.7 5,259,641 - GFF5271 0.13 +0.9 5,259,641 - GFF5271 0.13 +0.4 5,259,641 - GFF5271 0.13 +0.0 5,259,641 - GFF5271 0.13 -1.1 5,259,641 - GFF5271 0.13 -2.3 5,259,641 - GFF5271 0.13 -0.5 5,259,685 + GFF5271 0.18 -0.8 5,259,689 + GFF5271 0.19 -1.5 5,259,689 + GFF5271 0.19 -0.6 5,259,692 - GFF5271 0.19 -1.7 5,259,727 + GFF5271 0.23 -2.1 5,259,751 - GFF5271 0.26 -1.0 5,259,763 + GFF5271 0.27 -0.7 5,259,764 + GFF5271 0.27 +0.7 5,259,764 + GFF5271 0.27 -0.1 5,259,764 + GFF5271 0.27 -1.3 5,259,764 + GFF5271 0.27 +1.3 5,259,771 - GFF5271 0.28 -0.8 5,259,772 - GFF5271 0.28 -0.8 5,259,772 - GFF5271 0.28 +0.0 5,259,772 - GFF5271 0.28 -0.5 5,259,779 + GFF5271 0.29 +0.9 5,259,802 + GFF5271 0.32 -0.7 5,259,810 - GFF5271 0.32 -0.6 5,259,810 - GFF5271 0.32 -0.7 5,259,810 - GFF5271 0.32 -1.1 5,259,810 - GFF5271 0.32 +0.2 5,259,810 - GFF5271 0.32 -1.0 5,259,810 - GFF5271 0.32 -0.7 5,259,815 - GFF5271 0.33 -0.7 5,259,824 + GFF5271 0.34 -0.8 5,259,826 - GFF5271 0.34 +0.7 5,259,832 - GFF5271 0.35 -0.7 5,259,832 - GFF5271 0.35 -1.5 5,259,832 - GFF5271 0.35 -0.7 5,259,852 + GFF5271 0.37 -1.0 5,259,875 - GFF5271 0.40 +0.2 5,259,880 - GFF5271 0.40 -0.0 5,259,890 - GFF5271 0.42 -1.6 5,259,909 + GFF5271 0.44 -0.4 5,259,909 - GFF5271 0.44 -0.8 5,259,939 - GFF5271 0.47 -1.0 5,259,957 + GFF5271 0.49 -0.5 5,259,963 + GFF5271 0.50 +0.8 5,259,985 + GFF5271 0.52 -0.7 5,259,985 + GFF5271 0.52 +0.5 5,259,990 + GFF5271 0.53 -0.2 5,259,993 - GFF5271 0.53 -0.7 5,259,993 - GFF5271 0.53 -0.6 5,260,019 + GFF5271 0.56 -1.5 5,260,026 - GFF5271 0.57 +0.5 5,260,027 - GFF5271 0.57 +0.3
Or see this region's nucleotide sequence