Strain Fitness in Sphingobium sp. HT1-2 around GFF513

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
509,316	-		GFF512	0.26	-1.3
509,326	+		GFF512	0.27	-1.1
509,333	+		GFF512	0.28	-1.8
509,337	+		GFF512	0.28	+0.4
509,348	+		GFF512	0.29	-0.3
509,356	+		GFF512	0.29	-2.1
509,378	-		GFF512	0.31	-1.1
509,378	-		GFF512	0.31	-1.4
509,388	+		GFF512	0.32	-0.8
509,396	-		GFF512	0.32	-1.8
509,396	-		GFF512	0.32	-0.8
509,396	-		GFF512	0.32	+0.2
509,396	-		GFF512	0.32	-0.3
509,396	-		GFF512	0.32	-0.1
509,414	+		GFF512	0.34	+0.3
509,414	+		GFF512	0.34	+1.0
509,414	+		GFF512	0.34	+0.9
509,414	+		GFF512	0.34	-0.7
509,414	+		GFF512	0.34	-0.6
509,422	-		GFF512	0.34	+0.2
509,422	-		GFF512	0.34	-1.7
509,422	-		GFF512	0.34	-0.3
509,422	-		GFF512	0.34	-0.8
509,422	-		GFF512	0.34	-0.4
509,424	+		GFF512	0.34	-1.6
509,427	-		GFF512	0.35	-0.3
509,427	-		GFF512	0.35	+1.7
509,429	+		GFF512	0.35	-1.3
509,432	-		GFF512	0.35	-1.2
509,437	-		GFF512	0.35	+1.8
509,448	+		GFF512	0.36	-2.8
509,448	+		GFF512	0.36	-0.0
509,455	-		GFF512	0.37	-0.9
509,456	-		GFF512	0.37	-0.2
509,463	+		GFF512	0.37	-2.1
509,474	+		GFF512	0.38	-0.2
509,496	+		GFF512	0.40	-0.2
509,504	-		GFF512	0.40	+0.2
509,507	-		GFF512	0.41	-0.9
509,529	-		GFF512	0.42	-1.6
509,549	-		GFF512	0.44	-1.4
509,551	-		GFF512	0.44	+0.6
509,563	+		GFF512	0.45	-1.5
509,563	+		GFF512	0.45	-0.0
509,571	-		GFF512	0.45	-1.0
509,589	-		GFF512	0.47	-1.5
509,595	-		GFF512	0.47	-2.1
509,622	+		GFF512	0.49	+1.5
509,630	-		GFF512	0.50	-0.7
509,632	-		GFF512	0.50	-2.6
509,632	-		GFF512	0.50	-1.7
509,674	+		GFF512	0.53	-1.5
509,697	+		GFF512	0.55	-1.3
509,710	+		GFF512	0.56	+0.3
509,718	+		GFF512	0.56	+0.2
509,718	+		GFF512	0.56	-0.4
509,718	+		GFF512	0.56	-1.9
509,718	+		GFF512	0.56	+0.7
509,718	+		GFF512	0.56	-0.5
509,718	+		GFF512	0.56	-0.8
509,718	+		GFF512	0.56	-1.5
509,718	+		GFF512	0.56	-0.5
509,718	+		GFF512	0.56	-0.3
509,718	+		GFF512	0.56	+0.3
509,718	+		GFF512	0.56	+1.3
509,718	+		GFF512	0.56	-0.7
509,718	+		GFF512	0.56	-0.7
509,726	-		GFF512	0.57	-0.1
509,726	-		GFF512	0.57	-0.3
509,726	-		GFF512	0.57	+0.3
509,726	-		GFF512	0.57	+0.7
509,726	-		GFF512	0.57	-0.8
509,726	-		GFF512	0.57	-0.8
509,726	-		GFF512	0.57	-0.7
509,726	-		GFF512	0.57	-1.8
509,726	-		GFF512	0.57	+0.6
509,726	-		GFF512	0.57	-1.1
509,744	+		GFF512	0.58	+1.3
509,744	+		GFF512	0.58	+0.4
509,752	+		GFF512	0.59	-0.2
509,791	+		GFF512	0.62	-0.2
509,791	+		GFF512	0.62	+0.5
509,795	-		GFF512	0.62	-1.0
509,799	-		GFF512	0.62	-1.8
509,799	-		GFF512	0.62	+0.0
509,800	-		GFF512	0.62	+0.3
509,800	-		GFF512	0.62	-0.8
509,834	-		GFF512	0.65	-0.4
509,836	+		GFF512	0.65	+0.2
509,844	-		GFF512	0.65	-1.1
509,856	+		GFF512	0.66	+0.6
509,864	-		GFF512	0.67	-0.1
509,887	-		GFF512	0.69	-0.2
509,890	+		GFF512	0.69	+0.4
509,913	+		GFF512	0.71	-1.0
509,922	+		GFF512	0.71	+0.6
509,923	+		GFF512	0.71	-0.2
509,926	-		GFF512	0.72	-1.0
509,932	+		GFF512	0.72	-0.2
509,940	-		GFF512	0.73	+0.5
509,941	-		GFF512	0.73	-1.2
509,952	+		GFF512	0.73	+1.1
509,952	+		GFF512	0.73	-0.2
509,960	-		GFF512	0.74	-0.9
509,960	-		GFF512	0.74	+0.1
509,960	-		GFF512	0.74	-1.5
509,960	-		GFF512	0.74	-0.8
509,969	+		GFF512	0.75	+0.9
509,969	+		GFF512	0.75	+0.5
509,969	+		GFF512	0.75	-1.1
509,971	+		GFF512	0.75	-0.5
509,977	-		GFF512	0.75	+1.2
509,979	-		GFF512	0.75	+0.5
510,047	+		GFF512	0.80	-0.3
510,051	+		GFF512	0.81	+0.2
510,059	-		GFF512	0.81	-0.8
510,060	-		GFF512	0.81	-1.8
510,073	-		GFF512	0.82	-0.6
510,099	+		GFF512	0.84	+0.7
510,139	+		GFF512	0.87	+0.6
510,146	+		GFF512	0.88	+0.7
510,147	-		GFF512	0.88	-0.4
510,147	-		GFF512	0.88	-0.4
510,148	+		GFF512	0.88	+2.0
510,154	-		GFF512	0.88	-0.5
510,156	-		GFF512	0.89	-2.0
510,161	-		GFF512	0.89	+0.7
510,164	+		GFF512	0.89	-1.2
510,189	+				-0.0
510,189	+				+0.3
510,194	+				+1.2
510,194	+				-0.9
510,194	+				+0.1
510,195	+				+0.8
510,195	+				+0.8
510,195	+				-0.3
510,196	+				+0.5
510,202	-				-0.0
510,202	-				-1.2
510,202	-				-1.2
510,202	-				-0.2
510,230	+				-0.3
510,238	-				-0.5
510,238	-				-1.7
510,239	-				-0.8
510,239	-				+1.0
510,241	-				+1.7
510,246	-				-0.3
510,284	+				+1.2
510,284	+				-1.8
510,284	+				-0.6
510,284	+				-1.9
510,284	+				+0.5
510,292	-				+0.0
510,292	-				+0.1
510,292	-				-2.7
510,319	-				-0.6
510,327	-				+1.6
510,331	+				-0.4
510,336	+				-1.5
510,347	-				+0.1
510,364	-				-2.0
510,411	-				-2.2
510,413	+				+0.5
510,423	-				+0.3
510,423	-				-1.7
510,428	-		GFF513	0.10	-0.3
510,437	-		GFF513	0.11	-1.0
510,443	+		GFF513	0.12	-0.8
510,443	+		GFF513	0.12	+1.5
510,451	+		GFF513	0.12	-0.8
510,451	-		GFF513	0.12	+0.7
510,464	+		GFF513	0.13	-0.4
510,472	-		GFF513	0.14	+0.2
510,477	-		GFF513	0.14	-0.7
510,506	+		GFF513	0.17	+0.6
510,589	-		GFF513	0.24	+1.1
510,602	+		GFF513	0.25	+0.4
510,613	+		GFF513	0.26	+0.0
510,613	+		GFF513	0.26	+0.2
510,615	-		GFF513	0.26	-1.3
510,621	-		GFF513	0.27	-1.7
510,621	-		GFF513	0.27	+0.2
510,621	-		GFF513	0.27	-1.4
510,642	+		GFF513	0.28	+2.0
510,642	+		GFF513	0.28	-0.2
510,655	-		GFF513	0.29	-0.1
510,655	-		GFF513	0.29	-1.4
510,660	+		GFF513	0.30	+0.5
510,669	-		GFF513	0.31	+0.9
510,721	-		GFF513	0.35	-2.2
510,723	-		GFF513	0.35	+0.5
510,763	+		GFF513	0.39	-0.1
510,764	-		GFF513	0.39	-0.9
510,768	+		GFF513	0.39	+0.4
510,768	+		GFF513	0.39	-1.4
510,768	+		GFF513	0.39	-1.2
510,776	-		GFF513	0.40	+0.5
510,776	-		GFF513	0.40	+1.6
510,776	-		GFF513	0.40	-0.4
510,790	+		GFF513	0.41	-0.8
510,792	-		GFF513	0.41	-0.2
510,792	-		GFF513	0.41	-0.0
510,792	-		GFF513	0.41	-1.2
510,802	-		GFF513	0.42	-1.1
510,807	+		GFF513	0.42	-1.3
510,845	+		GFF513	0.46	+0.5
510,860	+		GFF513	0.47	-0.8
510,866	+		GFF513	0.47	-1.2
510,874	-		GFF513	0.48	-1.4
510,874	-		GFF513	0.48	+0.2
510,879	-		GFF513	0.48	-1.8
510,911	+		GFF513	0.51	-0.7
510,911	+		GFF513	0.51	-0.8
510,911	+		GFF513	0.51	-0.8
510,913	-		GFF513	0.51	-0.9
510,919	-		GFF513	0.52	+0.5
510,948	+		GFF513	0.54	+0.1
510,948	+		GFF513	0.54	-2.5
510,948	+		GFF513	0.54	-0.5
510,948	+		GFF513	0.54	-1.0
510,951	-		GFF513	0.54	-0.0
510,956	-		GFF513	0.55	-1.0
510,962	-		GFF513	0.55	-1.1
510,986	-		GFF513	0.57	-0.2
510,994	+		GFF513	0.58	-0.2
510,994	+		GFF513	0.58	-1.8
510,995	+		GFF513	0.58	+0.2
510,995	+		GFF513	0.58	+0.7
510,995	+		GFF513	0.58	-0.9
511,002	-		GFF513	0.59	+0.2
511,002	-		GFF513	0.59	-0.6
511,003	-		GFF513	0.59	-1.2
511,016	-		GFF513	0.60	+0.5
511,038	+		GFF513	0.62	-1.7
511,038	+		GFF513	0.62	+0.9
511,038	+		GFF513	0.62	+2.0
511,038	+		GFF513	0.62	-0.8
511,046	-		GFF513	0.63	-0.8
511,046	-		GFF513	0.63	-1.0
511,046	-		GFF513	0.63	-2.1
511,088	+		GFF513	0.66	-1.3
511,103	+		GFF513	0.67	-1.7
511,114	+		GFF513	0.68	-1.0
511,114	+		GFF513	0.68	+0.6
511,117	-		GFF513	0.69	-1.3
511,117	-		GFF513	0.69	+0.7
511,119	+		GFF513	0.69	-0.9
511,119	+		GFF513	0.69	-0.9
511,122	-		GFF513	0.69	-1.4
511,122	-		GFF513	0.69	+0.6
511,122	-		GFF513	0.69	-0.1
511,126	+		GFF513	0.69	-0.9
511,132	-		GFF513	0.70	+0.3
511,148	+		GFF513	0.71	-1.4
511,148	+		GFF513	0.71	-1.2
511,148	+		GFF513	0.71	-0.9
511,156	-		GFF513	0.72	-0.5
511,156	-		GFF513	0.72	-0.2
511,182	+		GFF513	0.74	+0.7
511,182	+		GFF513	0.74	-0.8
511,182	+		GFF513	0.74	-0.8
511,192	-		GFF513	0.75	+0.5
511,205	+		GFF513	0.76	+0.7
511,205	+		GFF513	0.76	+1.1
511,213	-		GFF513	0.77	+0.6
511,213	-		GFF513	0.77	-1.1
511,230	-		GFF513	0.78	-1.0
511,232	-		GFF513	0.78	+2.0
511,232	-		GFF513	0.78	+0.1
511,236	+		GFF513	0.79	+0.2
511,259	+		GFF513	0.81	+0.2
511,260	-		GFF513	0.81	-0.1
511,262	-		GFF513	0.81	-0.8
511,268	-		GFF513	0.81	+0.3
511,300	+		GFF513	0.84	-0.9
511,300	+		GFF513	0.84	-2.5
511,300	+		GFF513	0.84	+1.4
511,300	+		GFF513	0.84	+0.9
511,307	-		GFF513	0.85	+0.5
511,308	-		GFF513	0.85	-0.8
511,308	-		GFF513	0.85	-0.8
511,314	+		GFF513	0.85	-0.2
511,318	-		GFF513	0.86	-0.8
511,365	+		GFF513	0.90	-1.4
511,372	+				-0.5
511,379	+				-1.7
511,380	+				-1.5
511,380	-				-1.6
511,389	+				-1.4
511,392	-				-0.2
511,398	-				-0.7
511,412	+				-1.2
511,412	+				+0.2
511,412	+				-0.5
511,412	+				+0.7
511,412	+				+0.3
511,412	+				-0.4
511,412	+				-1.0
511,415	-				-0.2
511,416	+				-0.9
511,439	+				+0.6
511,439	+				-0.0
511,439	+				-0.0
511,447	-				-0.5
511,447	-				+0.7
511,447	-				-0.9
511,447	-				-1.8
511,449	+				-1.8
511,449	+				-1.9
511,449	+				-1.3
511,449	+				+0.2
511,449	+				-0.4
511,449	+				+0.6
511,449	+				+0.5
511,450	+				-0.7
511,457	-				-0.7
511,457	-				-0.2
511,457	-				-2.6
511,457	-				-0.5
511,490	+				-1.8
511,490	-				-0.8
511,490	-				-1.9
511,492	+				+1.1
511,498	-				-1.4
511,498	-				-0.4
511,498	-				-0.7
511,498	-				+0.7
511,511	+				+0.8
511,511	+				-0.8
511,513	+				-0.3
511,519	-				-1.2
511,541	-				+0.7
511,549	-				-2.1
511,549	-				+0.2
511,549	-				-1.0
511,549	-				-0.8
511,549	-				-0.2
511,561	+				+0.5
511,561	+				-1.0
511,564	-				-1.0
511,569	-				+0.5
511,596	-				-0.4
511,614	+		GFF514	0.14	+0.8
511,621	+		GFF514	0.18	+1.4
511,630	+		GFF514	0.23	-0.5
511,630	+		GFF514	0.23	-0.4
511,630	+		GFF514	0.23	+0.7
511,630	+		GFF514	0.23	+1.2
511,638	-		GFF514	0.28	-0.3
511,638	-		GFF514	0.28	-0.1
511,638	-		GFF514	0.28	-0.9
511,638	-		GFF514	0.28	-1.5
511,638	-		GFF514	0.28	-0.5
511,638	-		GFF514	0.28	+0.5
511,638	-		GFF514	0.28	-0.7
511,638	-		GFF514	0.28	-0.5
511,656	-		GFF514	0.39	-0.3
511,678	+		GFF514	0.51	-0.7
511,678	+		GFF514	0.51	-1.4
511,678	+		GFF514	0.51	-1.2
511,678	+		GFF514	0.51	-1.4
511,678	+		GFF514	0.51	-1.2
511,678	+		GFF514	0.51	-0.4
511,678	+		GFF514	0.51	+0.2
511,678	+		GFF514	0.51	-1.0
511,678	+		GFF514	0.51	-0.8
511,678	+		GFF514	0.51	-1.1
511,678	+		GFF514	0.51	-1.4
511,678	+		GFF514	0.51	+1.0
511,678	+		GFF514	0.51	-1.1
511,678	+		GFF514	0.51	-1.2
511,680	-		GFF514	0.53	+0.1
511,686	-		GFF514	0.56	-1.1
511,686	-		GFF514	0.56	+0.7
511,686	-		GFF514	0.56	+0.3
511,686	-		GFF514	0.56	-0.0
511,686	-		GFF514	0.56	+1.0
511,686	-		GFF514	0.56	+0.2
511,686	-		GFF514	0.56	-0.1
511,686	-		GFF514	0.56	-1.7
511,686	-		GFF514	0.56	+0.4
511,686	-		GFF514	0.56	-0.8
511,686	-		GFF514	0.56	-0.8
511,686	-		GFF514	0.56	+1.3
511,686	-		GFF514	0.56	-0.3
511,686	-		GFF514	0.56	+0.2
511,686	-		GFF514	0.56	-0.9
511,686	-		GFF514	0.56	-1.9
511,686	-		GFF514	0.56	-0.9
511,686	-		GFF514	0.56	-1.8
511,686	-		GFF514	0.56	+0.3
511,697	-		GFF514	0.63	-1.9
511,698	-		GFF514	0.63	-0.5
511,775	-				+0.1
511,775	-				-0.8
511,809	-				-0.7
511,851	+				-0.4
511,874	+				-0.8
511,874	+				+0.7
511,883	-				-1.4