Strain Fitness in Sphingobium sp. HT1-2 around GFF2914

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,982,613	-				-0.4
2,982,627	+				+0.7
2,982,627	+				+1.5
2,982,635	-				-0.3
2,982,636	+				+0.1
2,982,688	+				-1.4
2,982,688	+				-2.0
2,982,688	+				+0.8
2,982,714	+				-0.3
2,982,729	+				-1.2
2,982,755	+				+0.6
2,982,782	+				-0.4
2,982,782	+				-1.3
2,982,790	-				+1.9
2,982,800	+				+0.7
2,982,859	+				-1.3
2,982,872	-				-1.7
2,982,887	-				+0.1
2,982,888	+				-0.8
2,982,888	+				+0.8
2,982,888	+				-0.8
2,982,896	-				+0.7
2,982,909	-				-0.4
2,982,909	-				-1.2
2,982,938	+				-0.3
2,982,950	+				-0.1
2,982,950	+				-0.7
2,982,995	-				-0.9
2,983,006	+				-1.2
2,983,006	-				-1.3
2,983,024	+				-0.4
2,983,041	+				+0.6
2,983,051	-				-0.9
2,983,101	-				-1.2
2,983,135	-		GFF2913	0.27	+0.2
2,983,205	+		GFF2913	0.65	+0.6
2,983,205	+		GFF2913	0.65	+0.7
2,983,231	+		GFF2913	0.78	-1.4
2,983,231	+		GFF2913	0.78	-0.4
2,983,272	+				-0.4
2,983,276	+				-0.7
2,983,281	+				+0.2
2,983,289	-				-0.6
2,983,294	-				-0.5
2,983,294	-				-0.6
2,983,345	+				-1.9
2,983,349	-				-0.6
2,983,355	+				-1.3
2,983,360	+				-0.9
2,983,363	-				-0.4
2,983,366	+				+0.5
2,983,368	-				-0.3
2,983,374	-				+0.1
2,983,376	+				+0.1
2,983,376	+				-0.6
2,983,376	+				-0.9
2,983,376	+				+0.6
2,983,384	-				-2.7
2,983,384	-				+1.1
2,983,390	+				-0.9
2,983,410	-				-0.9
2,983,416	+				+1.2
2,983,416	+				-0.7
2,983,416	+				+0.4
2,983,416	+				-0.2
2,983,421	+				-1.6
2,983,424	-				-0.6
2,983,424	-				-1.1
2,983,424	-				+0.5
2,983,431	-				-1.5
2,983,449	+				-1.4
2,983,449	+				-0.5
2,983,457	-				-0.4
2,983,457	-				-1.8
2,983,466	+				-1.1
2,983,466	+				-0.6
2,983,474	-				-0.4
2,983,512	+		GFF2914	0.10	+0.4
2,983,520	-		GFF2914	0.11	-1.5
2,983,521	-		GFF2914	0.11	-0.4
2,983,547	+		GFF2914	0.12	+1.2
2,983,555	-		GFF2914	0.13	-0.4
2,983,563	-		GFF2914	0.13	-0.1
2,983,634	-		GFF2914	0.18	+0.1
2,983,635	-		GFF2914	0.18	-0.9
2,983,636	+		GFF2914	0.18	-1.1
2,983,651	+		GFF2914	0.19	+0.2
2,983,671	+		GFF2914	0.20	+0.5
2,983,676	+		GFF2914	0.20	-2.2
2,983,676	-		GFF2914	0.20	-0.6
2,983,679	-		GFF2914	0.20	-2.1
2,983,681	-		GFF2914	0.21	+1.2
2,983,682	+		GFF2914	0.21	-0.9
2,983,702	+		GFF2914	0.22	-1.5
2,983,710	-		GFF2914	0.22	-1.0
2,983,710	-		GFF2914	0.22	+0.9
2,983,712	-		GFF2914	0.22	+1.1
2,983,725	+		GFF2914	0.23	+0.5
2,983,725	+		GFF2914	0.23	-1.1
2,983,743	-		GFF2914	0.24	-0.3
2,983,768	-		GFF2914	0.26	+0.6
2,983,813	+		GFF2914	0.29	-0.8
2,983,813	+		GFF2914	0.29	-0.9
2,983,813	+		GFF2914	0.29	+0.6
2,983,813	+		GFF2914	0.29	-0.6
2,983,816	-		GFF2914	0.29	+1.1
2,983,821	-		GFF2914	0.29	+0.1
2,983,821	-		GFF2914	0.29	+0.9
2,983,821	-		GFF2914	0.29	-2.1
2,983,821	-		GFF2914	0.29	+0.6
2,983,821	-		GFF2914	0.29	-0.1
2,983,840	+		GFF2914	0.30	-0.4
2,983,848	-		GFF2914	0.31	-1.2
2,983,848	-		GFF2914	0.31	-1.0
2,983,864	+		GFF2914	0.32	+0.8
2,983,866	+		GFF2914	0.32	-1.4
2,983,866	+		GFF2914	0.32	-0.8
2,983,866	+		GFF2914	0.32	-1.4
2,983,874	-		GFF2914	0.32	-0.5
2,983,874	-		GFF2914	0.32	+0.1
2,983,874	-		GFF2914	0.32	-0.6
2,983,874	-		GFF2914	0.32	+0.4
2,983,875	-		GFF2914	0.32	-0.6
2,983,904	+		GFF2914	0.34	+0.5
2,983,917	+		GFF2914	0.35	-1.1
2,983,938	+		GFF2914	0.36	+0.1
2,983,970	+		GFF2914	0.38	-0.3
2,983,970	+		GFF2914	0.38	+0.6
2,983,970	+		GFF2914	0.38	-0.3
2,983,971	+		GFF2914	0.38	-1.4
2,983,975	+		GFF2914	0.38	+0.0
2,983,978	-		GFF2914	0.39	-1.5
2,983,978	-		GFF2914	0.39	+0.9
2,983,985	+		GFF2914	0.39	-0.3
2,984,015	-		GFF2914	0.41	+0.1
2,984,031	+		GFF2914	0.42	+0.0
2,984,031	+		GFF2914	0.42	+1.4
2,984,039	-		GFF2914	0.42	-0.2
2,984,039	-		GFF2914	0.42	-2.0
2,984,039	-		GFF2914	0.42	+0.0
2,984,074	+		GFF2914	0.44	+0.8
2,984,082	-		GFF2914	0.45	-0.7
2,984,119	+		GFF2914	0.47	+0.4
2,984,133	-		GFF2914	0.48	-1.4
2,984,135	+		GFF2914	0.48	-1.2
2,984,135	+		GFF2914	0.48	-0.4
2,984,135	+		GFF2914	0.48	-2.1
2,984,135	+		GFF2914	0.48	-2.5
2,984,141	+		GFF2914	0.49	-1.0
2,984,143	-		GFF2914	0.49	-1.0
2,984,152	+		GFF2914	0.49	-0.6
2,984,169	-		GFF2914	0.50	-0.1
2,984,183	+		GFF2914	0.51	-1.4
2,984,195	+		GFF2914	0.52	-1.4
2,984,251	+		GFF2914	0.55	-0.5
2,984,279	+		GFF2914	0.57	+0.2
2,984,287	+		GFF2914	0.57	-0.1
2,984,313	+		GFF2914	0.59	+0.0
2,984,326	+		GFF2914	0.60	-1.3
2,984,328	+		GFF2914	0.60	+0.4
2,984,371	+		GFF2914	0.63	-0.9
2,984,398	-		GFF2914	0.64	-2.4
2,984,401	+		GFF2914	0.64	-2.0
2,984,448	+		GFF2914	0.67	-0.8
2,984,450	-		GFF2914	0.67	-0.6
2,984,456	-		GFF2914	0.68	+0.6
2,984,456	-		GFF2914	0.68	+0.8
2,984,465	-		GFF2914	0.68	+0.6
2,984,465	-		GFF2914	0.68	-0.5
2,984,470	-		GFF2914	0.69	-0.4
2,984,475	+		GFF2914	0.69	-0.2
2,984,475	+		GFF2914	0.69	-0.1
2,984,475	-		GFF2914	0.69	+0.6
2,984,489	-		GFF2914	0.70	-0.9
2,984,512	-		GFF2914	0.71	+0.8
2,984,513	+		GFF2914	0.71	-0.9
2,984,540	+		GFF2914	0.73	-0.5
2,984,545	+		GFF2914	0.73	+1.1
2,984,548	-		GFF2914	0.73	-0.1
2,984,548	-		GFF2914	0.73	+0.2
2,984,548	-		GFF2914	0.73	+0.9
2,984,548	-		GFF2914	0.73	-0.6
2,984,553	-		GFF2914	0.74	+1.4
2,984,559	-		GFF2914	0.74	+0.6
2,984,582	-		GFF2914	0.75	-0.9
2,984,602	+		GFF2914	0.77	-0.3
2,984,602	+		GFF2914	0.77	-0.1
2,984,602	+		GFF2914	0.77	-1.0
2,984,602	+		GFF2914	0.77	-1.6
2,984,602	+		GFF2914	0.77	+0.6
2,984,602	+		GFF2914	0.77	-0.3
2,984,602	+		GFF2914	0.77	-1.0
2,984,602	+		GFF2914	0.77	+0.2
2,984,604	+		GFF2914	0.77	-0.4
2,984,607	+		GFF2914	0.77	+0.7
2,984,610	-		GFF2914	0.77	-1.1
2,984,610	-		GFF2914	0.77	+0.5
2,984,610	-		GFF2914	0.77	+0.8
2,984,610	-		GFF2914	0.77	-0.4
2,984,610	-		GFF2914	0.77	-0.3
2,984,610	-		GFF2914	0.77	-1.5
2,984,610	-		GFF2914	0.77	-0.4
2,984,615	-		GFF2914	0.77	+0.2
2,984,620	-		GFF2914	0.78	+0.7
2,984,622	+		GFF2914	0.78	-0.5
2,984,627	+		GFF2914	0.78	+1.2
2,984,627	+		GFF2914	0.78	+1.1
2,984,635	-		GFF2914	0.79	-0.4
2,984,651	-		GFF2914	0.80	-0.4
2,984,654	-		GFF2914	0.80	-0.5
2,984,661	-		GFF2914	0.80	-0.6
2,984,662	+		GFF2914	0.80	+0.5
2,984,683	-		GFF2914	0.82	+0.6
2,984,701	+		GFF2914	0.83	-0.3
2,984,701	+		GFF2914	0.83	-1.8
2,984,701	+		GFF2914	0.83	+0.7
2,984,703	+		GFF2914	0.83	+0.5
2,984,718	-		GFF2914	0.84	-1.1
2,984,730	+		GFF2914	0.84	-0.9
2,984,743	+		GFF2914	0.85	-0.6
2,984,745	+		GFF2914	0.85	-0.5
2,984,745	+		GFF2914	0.85	-0.7
2,984,754	-		GFF2914	0.86	-0.3
2,984,757	+		GFF2914	0.86	+0.9
2,984,757	+		GFF2914	0.86	-0.8
2,984,757	+		GFF2914	0.86	+1.0
2,984,757	+		GFF2914	0.86	-0.4
2,984,757	+		GFF2914	0.86	-0.1
2,984,762	+		GFF2914	0.86	+0.4
2,984,765	-		GFF2914	0.86	-0.9
2,984,800	+		GFF2914	0.89	+1.4
2,984,810	-		GFF2914	0.89	-1.6
2,984,810	-		GFF2914	0.89	-0.9
2,984,810	-		GFF2914	0.89	+0.4
2,984,856	+				+0.3
2,984,856	+				+0.6
2,984,885	-				+0.6
2,984,894	+				+0.8
2,984,905	-				+0.0
2,984,917	+				-1.1
2,984,925	-				+1.0
2,984,931	+				+1.6
2,984,948	+				-1.8
2,984,953	+				-0.8
2,984,961	-				-1.3
2,984,993	+				-0.0
2,985,008	-				-0.1
2,985,018	-				-0.7
2,985,024	+				-1.0
2,985,037	-		GFF2915	0.11	-1.5
2,985,053	-		GFF2915	0.14	-0.1
2,985,053	-		GFF2915	0.14	-1.1
2,985,053	-		GFF2915	0.14	-0.3
2,985,055	+		GFF2915	0.15	-0.3
2,985,055	+		GFF2915	0.15	+0.8
2,985,055	+		GFF2915	0.15	+0.6
2,985,063	-		GFF2915	0.16	-0.6
2,985,063	-		GFF2915	0.16	-0.4
2,985,068	-		GFF2915	0.17	-0.5
2,985,094	+		GFF2915	0.23	+0.5
2,985,103	-		GFF2915	0.25	-0.8
2,985,121	-		GFF2915	0.28	-1.0
2,985,133	+		GFF2915	0.31	+1.0
2,985,135	+		GFF2915	0.31	+1.2
2,985,139	-		GFF2915	0.32	-1.3
2,985,140	+		GFF2915	0.32	-0.3
2,985,140	+		GFF2915	0.32	+0.2
2,985,143	-		GFF2915	0.33	-1.5
2,985,145	+		GFF2915	0.34	-0.8
2,985,148	-		GFF2915	0.34	+0.5
2,985,150	-		GFF2915	0.35	+0.4
2,985,154	+		GFF2915	0.35	+1.6
2,985,154	+		GFF2915	0.35	-0.6
2,985,154	+		GFF2915	0.35	+0.5
2,985,162	-		GFF2915	0.37	-1.4
2,985,162	-		GFF2915	0.37	-0.7
2,985,162	-		GFF2915	0.37	-1.1
2,985,162	-		GFF2915	0.37	-1.4
2,985,162	-		GFF2915	0.37	-2.4
2,985,162	-		GFF2915	0.37	-1.1
2,985,211	+		GFF2915	0.47	-1.1
2,985,217	+		GFF2915	0.49	+0.4
2,985,364	-		GFF2915	0.80	-0.1
2,985,418	-				-1.6
2,985,488	-				+0.7
2,985,503	+				+1.1
2,985,626	+		GFF2916	0.24	+0.2
2,985,639	+		GFF2916	0.26	-0.9
2,985,639	+		GFF2916	0.26	-1.7
2,985,703	-		GFF2916	0.39	+0.5
2,985,703	-		GFF2916	0.39	-1.3
2,985,703	-		GFF2916	0.39	-0.6
2,985,851	+		GFF2916	0.67	-1.4
2,985,856	+		GFF2916	0.68	-0.9
2,985,856	+		GFF2916	0.68	-1.6
2,985,856	+		GFF2916	0.68	+0.6
2,985,856	+		GFF2916	0.68	-0.5
2,985,856	+		GFF2916	0.68	-1.9
2,985,881	+		GFF2916	0.73	-1.4
2,985,886	+		GFF2916	0.74	-0.5
2,985,889	-		GFF2916	0.75	-0.1
2,985,907	+		GFF2916	0.78	-0.0
2,985,915	-		GFF2916	0.80	-0.5
2,985,941	+		GFF2916	0.85	-1.1
2,985,974	+				-0.7
2,985,974	+				-0.6
2,985,982	-				+0.5
2,985,983	+				+0.7
2,985,986	-				-0.2