Strain Fitness in Sphingobium sp. HT1-2 around GFF1386

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,408,171	+		GFF1384	0.57	-0.7
1,408,174	-		GFF1384	0.57	-1.7
1,408,174	-		GFF1384	0.57	+0.9
1,408,174	-		GFF1384	0.57	-0.6
1,408,174	-		GFF1384	0.57	-0.2
1,408,174	-		GFF1384	0.57	-1.5
1,408,175	-		GFF1384	0.57	+0.1
1,408,176	-		GFF1384	0.57	+1.7
1,408,185	-		GFF1384	0.59	+0.9
1,408,215	+		GFF1384	0.62	-1.5
1,408,238	-		GFF1384	0.65	-0.2
1,408,251	-		GFF1384	0.67	-0.1
1,408,251	-		GFF1384	0.67	-2.0
1,408,261	-		GFF1384	0.68	-1.4
1,408,277	-		GFF1384	0.70	-0.2
1,408,277	-		GFF1384	0.70	-0.1
1,408,298	-		GFF1384	0.73	-1.2
1,408,300	-		GFF1384	0.73	-0.3
1,408,302	+		GFF1384	0.74	-1.1
1,408,322	-		GFF1384	0.76	-0.7
1,408,322	-		GFF1384	0.76	-0.6
1,408,332	+		GFF1384	0.78	+0.7
1,408,344	+		GFF1384	0.79	+0.0
1,408,345	+		GFF1384	0.79	-1.1
1,408,389	+		GFF1384	0.85	-1.1
1,408,419	-		GFF1384	0.89	-0.0
1,408,445	+				-2.0
1,408,452	+				-2.4
1,408,462	-				+0.1
1,408,464	+				-0.7
1,408,486	-				-0.5
1,408,493	+				-0.7
1,408,501	+				+0.6
1,408,503	+				-1.3
1,408,503	+				+0.6
1,408,503	+				-0.9
1,408,513	+				-0.7
1,408,514	-				+0.8
1,408,520	-				+0.7
1,408,557	-				-0.5
1,408,557	-				+1.3
1,408,580	-				+0.7
1,408,581	-				-1.0
1,408,583	+		GFF1385	0.10	+0.7
1,408,592	+		GFF1385	0.12	-0.3
1,408,606	+		GFF1385	0.14	+0.6
1,408,640	+		GFF1385	0.19	-1.3
1,408,673	-		GFF1385	0.24	+0.9
1,408,681	+		GFF1385	0.25	-1.0
1,408,688	+		GFF1385	0.26	+0.1
1,408,688	+		GFF1385	0.26	+0.4
1,408,688	+		GFF1385	0.26	-0.6
1,408,693	+		GFF1385	0.27	+0.5
1,408,696	-		GFF1385	0.27	+0.2
1,408,696	-		GFF1385	0.27	+1.7
1,408,696	-		GFF1385	0.27	-0.3
1,408,696	-		GFF1385	0.27	-0.6
1,408,696	-		GFF1385	0.27	+0.7
1,408,696	-		GFF1385	0.27	-1.4
1,408,698	+		GFF1385	0.27	+0.5
1,408,698	+		GFF1385	0.27	-0.3
1,408,698	+		GFF1385	0.27	-0.8
1,408,698	+		GFF1385	0.27	+0.1
1,408,698	+		GFF1385	0.27	-1.2
1,408,698	+		GFF1385	0.27	+1.0
1,408,698	+		GFF1385	0.27	-1.0
1,408,698	+		GFF1385	0.27	+1.3
1,408,701	-		GFF1385	0.28	-0.2
1,408,701	-		GFF1385	0.28	-2.1
1,408,701	-		GFF1385	0.28	-0.5
1,408,706	-		GFF1385	0.29	-0.2
1,408,706	-		GFF1385	0.29	-2.1
1,408,706	-		GFF1385	0.29	+0.2
1,408,706	-		GFF1385	0.29	-0.2
1,408,706	-		GFF1385	0.29	+0.3
1,408,706	-		GFF1385	0.29	-0.6
1,408,773	-		GFF1385	0.39	-1.3
1,408,774	+		GFF1385	0.39	-0.5
1,408,783	+		GFF1385	0.40	-0.8
1,408,791	-		GFF1385	0.41	-0.6
1,408,797	+		GFF1385	0.42	-0.1
1,408,797	+		GFF1385	0.42	+0.1
1,408,797	+		GFF1385	0.42	-1.0
1,408,797	+		GFF1385	0.42	-2.3
1,408,805	-		GFF1385	0.44	-0.9
1,408,805	-		GFF1385	0.44	-1.1
1,408,805	-		GFF1385	0.44	-1.5
1,408,805	-		GFF1385	0.44	-1.2
1,408,810	-		GFF1385	0.44	-0.8
1,408,815	-		GFF1385	0.45	+0.7
1,408,825	-		GFF1385	0.47	-2.0
1,408,835	+		GFF1385	0.48	-1.1
1,408,843	+		GFF1385	0.49	-0.7
1,408,843	+		GFF1385	0.49	+0.5
1,408,843	+		GFF1385	0.49	+0.8
1,408,855	+		GFF1385	0.51	-0.8
1,408,856	-		GFF1385	0.51	-0.9
1,408,909	+		GFF1385	0.59	+1.3
1,408,924	+		GFF1385	0.61	-1.0
1,408,930	-		GFF1385	0.62	-0.3
1,408,934	+		GFF1385	0.63	-0.2
1,408,934	+		GFF1385	0.63	-1.4
1,408,934	+		GFF1385	0.63	-1.8
1,408,939	+		GFF1385	0.64	-0.8
1,408,939	+		GFF1385	0.64	-0.6
1,408,939	+		GFF1385	0.64	-1.8
1,408,939	+		GFF1385	0.64	-0.9
1,408,939	+		GFF1385	0.64	+0.6
1,408,939	+		GFF1385	0.64	-1.1
1,408,939	+		GFF1385	0.64	-0.9
1,408,939	+		GFF1385	0.64	-1.3
1,408,939	+		GFF1385	0.64	+0.6
1,408,939	+		GFF1385	0.64	-0.4
1,408,939	+		GFF1385	0.64	-1.3
1,408,939	+		GFF1385	0.64	+0.6
1,408,939	+		GFF1385	0.64	+0.4
1,408,939	+		GFF1385	0.64	+0.5
1,408,939	+		GFF1385	0.64	-0.6
1,408,939	+		GFF1385	0.64	-0.6
1,408,939	+		GFF1385	0.64	-1.5
1,408,939	+		GFF1385	0.64	-1.4
1,408,939	+		GFF1385	0.64	-1.5
1,408,947	-		GFF1385	0.65	+0.9
1,408,947	-		GFF1385	0.65	+0.5
1,408,947	-		GFF1385	0.65	+0.3
1,408,947	-		GFF1385	0.65	-1.5
1,408,947	-		GFF1385	0.65	+0.5
1,408,947	-		GFF1385	0.65	+0.3
1,408,947	-		GFF1385	0.65	-1.6
1,408,947	-		GFF1385	0.65	-0.4
1,408,947	-		GFF1385	0.65	-0.4
1,408,947	-		GFF1385	0.65	-0.4
1,408,947	-		GFF1385	0.65	-0.5
1,408,947	-		GFF1385	0.65	-1.8
1,408,947	-		GFF1385	0.65	-0.8
1,408,947	-		GFF1385	0.65	+0.9
1,408,952	-		GFF1385	0.66	-1.0
1,408,963	+		GFF1385	0.67	+0.7
1,408,968	+		GFF1385	0.68	-1.0
1,408,973	+		GFF1385	0.69	-1.0
1,408,989	-		GFF1385	0.71	-0.5
1,409,011	+		GFF1385	0.74	-1.2
1,409,011	+		GFF1385	0.74	-1.2
1,409,019	-		GFF1385	0.76	-1.3
1,409,035	-		GFF1385	0.78	+0.5
1,409,101	+		GFF1385	0.88	-1.0
1,409,101	+		GFF1385	0.88	+0.2
1,409,106	+		GFF1385	0.89	-0.9
1,409,109	-		GFF1385	0.89	+0.2
1,409,109	-		GFF1385	0.89	+0.1
1,409,109	-		GFF1385	0.89	-0.1
1,409,118	+				+1.7
1,409,119	-				-1.5
1,409,181	+				-0.6
1,409,181	+				+0.5
1,409,181	+				-0.3
1,409,189	-				+0.5
1,409,189	-				+1.4
1,409,197	-				-0.3
1,409,207	+				+0.7
1,409,209	-				+0.2
1,409,218	-				-3.0
1,409,232	-				-0.4
1,409,239	-				-1.1
1,409,241	-				-0.6
1,409,241	-				+0.0
1,409,241	-				+1.4
1,409,241	-				-0.4
1,409,241	-				+1.1
1,409,259	-				+0.4
1,409,261	-				-1.8
1,409,274	-				-0.8
1,409,297	-				-0.2
1,409,304	+				-0.4
1,409,309	+				-2.0
1,409,309	+				+0.8
1,409,317	-				-1.3
1,409,317	-				-1.1
1,409,322	-				-1.6
1,409,344	+				-1.4
1,409,344	+				+0.3
1,409,347	-				+0.0
1,409,426	+		GFF1386	0.11	-1.1
1,409,431	+		GFF1386	0.11	-1.0
1,409,434	-		GFF1386	0.11	+1.0
1,409,434	-		GFF1386	0.11	-0.3
1,409,436	+		GFF1386	0.11	-1.1
1,409,444	-		GFF1386	0.11	-0.3
1,409,444	-		GFF1386	0.11	-0.6
1,409,451	+		GFF1386	0.12	-1.6
1,409,451	+		GFF1386	0.12	-1.1
1,409,451	+		GFF1386	0.12	+0.8
1,409,451	+		GFF1386	0.12	-0.3
1,409,456	+		GFF1386	0.12	-0.7
1,409,459	-		GFF1386	0.12	+0.1
1,409,461	+		GFF1386	0.12	-0.2
1,409,461	+		GFF1386	0.12	+0.4
1,409,462	+		GFF1386	0.12	-1.6
1,409,462	+		GFF1386	0.12	+0.7
1,409,462	+		GFF1386	0.12	-0.3
1,409,462	+		GFF1386	0.12	+0.2
1,409,463	+		GFF1386	0.12	-1.5
1,409,463	+		GFF1386	0.12	-1.5
1,409,469	-		GFF1386	0.12	+0.5
1,409,470	-		GFF1386	0.12	-1.4
1,409,470	-		GFF1386	0.12	-0.1
1,409,470	-		GFF1386	0.12	-1.3
1,409,470	-		GFF1386	0.12	-1.7
1,409,470	-		GFF1386	0.12	-1.6
1,409,471	-		GFF1386	0.12	-0.4
1,409,471	-		GFF1386	0.12	+0.4
1,409,472	+		GFF1386	0.12	+0.1
1,409,478	+		GFF1386	0.13	-1.0
1,409,483	+		GFF1386	0.13	-1.6
1,409,491	-		GFF1386	0.13	-0.5
1,409,491	-		GFF1386	0.13	-1.4
1,409,492	-		GFF1386	0.13	-0.8
1,409,497	+		GFF1386	0.14	-0.1
1,409,497	+		GFF1386	0.14	-2.5
1,409,497	+		GFF1386	0.14	+0.8
1,409,497	+		GFF1386	0.14	-0.3
1,409,497	+		GFF1386	0.14	-0.3
1,409,497	+		GFF1386	0.14	+1.0
1,409,497	+		GFF1386	0.14	-0.4
1,409,497	+		GFF1386	0.14	+0.3
1,409,497	+		GFF1386	0.14	-1.4
1,409,505	-		GFF1386	0.14	-1.2
1,409,505	-		GFF1386	0.14	+1.1
1,409,505	-		GFF1386	0.14	-0.7
1,409,505	-		GFF1386	0.14	-1.7
1,409,505	-		GFF1386	0.14	+0.8
1,409,505	-		GFF1386	0.14	+0.3
1,409,515	-		GFF1386	0.14	-0.1
1,409,540	+		GFF1386	0.15	-0.7
1,409,546	+		GFF1386	0.16	+0.2
1,409,568	+		GFF1386	0.16	-0.2
1,409,576	-		GFF1386	0.17	-0.6
1,409,577	-		GFF1386	0.17	-0.1
1,409,579	+		GFF1386	0.17	-2.0
1,409,610	+		GFF1386	0.18	-1.6
1,409,618	-		GFF1386	0.19	-0.2
1,409,634	-		GFF1386	0.19	+0.5
1,409,634	-		GFF1386	0.19	-1.0
1,409,691	+		GFF1386	0.22	-0.1
1,409,696	+		GFF1386	0.22	-1.7
1,409,696	-		GFF1386	0.22	-1.1
1,409,699	-		GFF1386	0.22	-1.2
1,409,699	-		GFF1386	0.22	-0.8
1,409,699	-		GFF1386	0.22	+0.3
1,409,699	-		GFF1386	0.22	-0.7
1,409,711	+		GFF1386	0.22	-1.1
1,409,718	-		GFF1386	0.23	-1.0
1,409,719	-		GFF1386	0.23	-1.1
1,409,721	+		GFF1386	0.23	-1.3
1,409,736	+		GFF1386	0.23	-1.2
1,409,744	-		GFF1386	0.24	+0.3
1,409,768	+		GFF1386	0.25	+0.1
1,409,768	+		GFF1386	0.25	-0.5
1,409,768	+		GFF1386	0.25	-0.6
1,409,768	+		GFF1386	0.25	-0.9
1,409,768	+		GFF1386	0.25	+0.8
1,409,776	-		GFF1386	0.25	+0.3
1,409,776	-		GFF1386	0.25	+1.3
1,409,776	-		GFF1386	0.25	-0.6
1,409,776	-		GFF1386	0.25	-0.5
1,409,776	-		GFF1386	0.25	+0.6
1,409,778	+		GFF1386	0.25	-1.5
1,409,778	+		GFF1386	0.25	-1.7
1,409,778	+		GFF1386	0.25	-0.2
1,409,778	+		GFF1386	0.25	-0.0
1,409,778	+		GFF1386	0.25	-0.0
1,409,778	+		GFF1386	0.25	-1.5
1,409,786	-		GFF1386	0.25	+1.0
1,409,786	-		GFF1386	0.25	-1.0
1,409,786	-		GFF1386	0.25	-0.9
1,409,786	-		GFF1386	0.25	+0.2
1,409,786	-		GFF1386	0.25	-0.5
1,409,786	-		GFF1386	0.25	-0.2
1,409,786	-		GFF1386	0.25	-1.3
1,409,786	-		GFF1386	0.25	+0.2
1,409,786	-		GFF1386	0.25	+0.7
1,409,786	-		GFF1386	0.25	-0.1
1,409,786	-		GFF1386	0.25	+0.7
1,409,786	-		GFF1386	0.25	-0.9
1,409,795	+		GFF1386	0.26	+1.0
1,409,795	+		GFF1386	0.26	-2.2
1,409,803	-		GFF1386	0.26	-0.3
1,409,805	+		GFF1386	0.26	-1.5
1,409,805	+		GFF1386	0.26	-0.9
1,409,805	+		GFF1386	0.26	-0.7
1,409,813	-		GFF1386	0.27	+1.4
1,409,813	-		GFF1386	0.27	+0.5
1,409,816	+		GFF1386	0.27	-0.5
1,409,818	-		GFF1386	0.27	-0.2
1,409,835	-		GFF1386	0.28	-0.3
1,409,855	+		GFF1386	0.28	+1.9
1,409,863	-		GFF1386	0.29	-0.5
1,409,863	-		GFF1386	0.29	-0.2
1,409,868	+		GFF1386	0.29	-1.3
1,409,869	+		GFF1386	0.29	-1.1
1,409,869	+		GFF1386	0.29	-0.6
1,409,869	+		GFF1386	0.29	-0.5
1,409,869	+		GFF1386	0.29	-0.9
1,409,877	-		GFF1386	0.29	-0.3
1,409,877	-		GFF1386	0.29	-0.0
1,409,882	-		GFF1386	0.29	-2.9
1,409,890	-		GFF1386	0.30	-0.5
1,409,912	+		GFF1386	0.31	-2.7
1,409,935	+		GFF1386	0.32	-0.7
1,409,943	-		GFF1386	0.32	-0.1
1,409,943	-		GFF1386	0.32	+0.0
1,409,973	-		GFF1386	0.33	-0.2
1,409,982	+		GFF1386	0.34	-0.5
1,410,006	+		GFF1386	0.35	-0.4
1,410,006	+		GFF1386	0.35	-0.7
1,410,007	+		GFF1386	0.35	+1.1
1,410,009	-		GFF1386	0.35	-1.0
1,410,009	-		GFF1386	0.35	+0.8
1,410,015	-		GFF1386	0.35	+0.4
1,410,016	+		GFF1386	0.35	-1.4
1,410,016	+		GFF1386	0.35	+0.5
1,410,026	+		GFF1386	0.35	-2.9
1,410,033	-		GFF1386	0.36	-1.2
1,410,034	-		GFF1386	0.36	+0.5
1,410,044	-		GFF1386	0.36	+0.5
1,410,044	-		GFF1386	0.36	-1.2
1,410,060	+		GFF1386	0.37	-1.4
1,410,060	+		GFF1386	0.37	-1.5
1,410,060	+		GFF1386	0.37	-1.5
1,410,060	+		GFF1386	0.37	+0.7
1,410,060	+		GFF1386	0.37	+1.1
1,410,060	+		GFF1386	0.37	+0.5
1,410,060	+		GFF1386	0.37	-0.6
1,410,068	-		GFF1386	0.37	+0.8
1,410,068	-		GFF1386	0.37	-2.5
1,410,068	-		GFF1386	0.37	-1.5
1,410,068	-		GFF1386	0.37	-0.6
1,410,068	-		GFF1386	0.37	-0.7
1,410,073	-		GFF1386	0.37	-0.6
1,410,073	-		GFF1386	0.37	-1.1
1,410,073	-		GFF1386	0.37	-0.2
1,410,075	+		GFF1386	0.37	-1.3
1,410,084	+		GFF1386	0.38	-0.8
1,410,084	+		GFF1386	0.38	+0.3
1,410,110	-		GFF1386	0.39	-0.6
1,410,115	+		GFF1386	0.39	+0.2
1,410,120	+		GFF1386	0.39	-1.0
1,410,123	-		GFF1386	0.39	+0.4
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1,410,329	-		GFF1386	0.48	-2.0
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1,410,355	-		GFF1386	0.49	-2.1
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1,410,532	-		GFF1386	0.56	-1.9
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1,410,604	+		GFF1386	0.59	-0.9
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1,410,612	-		GFF1386	0.60	+0.4
1,410,622	+		GFF1386	0.60	-2.0
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1,410,720	+		GFF1386	0.64	-1.1
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1,410,789	-		GFF1386	0.67	-0.3
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1,411,060	+		GFF1386	0.78	-0.9
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1,411,135	+		GFF1386	0.81	-1.3
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1,411,143	-		GFF1386	0.82	-1.4
1,411,143	-		GFF1386	0.82	-0.2
1,411,143	-		GFF1386	0.82	-0.4
1,411,143	-		GFF1386	0.82	-2.2
1,411,143	-		GFF1386	0.82	-0.5
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1,411,143	-		GFF1386	0.82	-2.0
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1,411,143	-		GFF1386	0.82	-1.5
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1,411,162	-		GFF1386	0.82	-0.5
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1,411,269	+		GFF1386	0.87	-0.3
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1,411,269	+		GFF1386	0.87	-1.9
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1,411,269	+		GFF1386	0.87	-0.3
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1,411,269	+		GFF1386	0.87	+1.8
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1,411,277	-		GFF1386	0.87	-2.1
1,411,277	-		GFF1386	0.87	-0.2
1,411,277	-		GFF1386	0.87	-0.1
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1,411,299	+		GFF1386	0.88	-0.9
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1,411,307	-		GFF1386	0.88	-2.1
1,411,307	-		GFF1386	0.88	-1.3
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1,411,358	+				-0.2
1,411,358	+				-0.1
1,411,366	-				+1.3
1,411,366	-				-0.2
1,411,366	-				-1.0
1,411,413	+				-2.1
1,411,454	+				-0.3
1,411,459	+				-2.0
1,411,459	+				-0.8
1,411,459	+				-0.0
1,411,459	+				-1.5
1,411,459	+				-0.7
1,411,459	+				-1.4
1,411,459	+				+1.1
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1,411,459	+				-0.3
1,411,459	+				-0.1
1,411,459	+				-0.1
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1,411,467	-				-0.4
1,411,467	-				-0.7
1,411,467	-				-2.0
1,411,467	-				+0.9
1,411,467	-				+0.3
1,411,467	-				+0.4
1,411,467	-				-0.7
1,411,467	-				+0.8
1,411,467	-				-0.7
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1,411,471	+				-0.4
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1,411,479	-				-1.7
1,411,479	-				-0.4
1,411,479	-				-0.6
1,411,479	-				-1.1
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1,411,493	+				+0.3
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1,411,536	+				-1.7
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1,412,255	-		GFF1387	0.85	-2.0
1,412,257	+		GFF1387	0.85	-0.7
1,412,266	+		GFF1387	0.87	-0.1
1,412,274	-		GFF1387	0.88	+1.1
1,412,294	+				-1.3
1,412,302	-				-0.6
1,412,310	-				+0.5
1,412,336	+				-0.7
1,412,344	-				-0.8
1,412,399	+				-1.1
1,412,421	-				-1.2
1,412,455	-				-0.2
1,412,456	+				-1.4
1,412,510	-				-2.0
1,412,510	-				-0.8
1,412,519	-				-1.9
1,412,533	+				+0.5
1,412,533	+				+1.2
1,412,561	+		GFF1388	0.10	-0.7
1,412,565	+		GFF1388	0.11	-0.5