Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF960 and GFF961 are separated by 118 nucleotides GFF961 and GFF962 are separated by 33 nucleotides GFF962 and GFF963 are separated by 202 nucleotides
GFF960 - Acetyl-CoA synthetase (EC 6.2.1.1), at 961,016 to 962,959
GFF960
GFF961 - Cytochrome b561, at 963,078 to 963,590
GFF961
GFF962 - 2-polyprenyl-6-methoxyphenol hydroxylase; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 963,624 to 964,832
GFF962
GFF963 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 965,035 to 966,126
GFF963
Position (kb) 963
964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 962.674 kb on + strand, within GFF960 at 962.675 kb on - strand, within GFF960 at 962.676 kb on - strand, within GFF960 at 962.676 kb on - strand, within GFF960 at 962.684 kb on + strand, within GFF960 at 962.692 kb on - strand, within GFF960 at 962.694 kb on + strand, within GFF960 at 962.694 kb on + strand, within GFF960 at 962.724 kb on + strand, within GFF960 at 962.727 kb on - strand, within GFF960 at 962.741 kb on + strand, within GFF960 at 962.746 kb on + strand, within GFF960 at 962.746 kb on + strand, within GFF960 at 962.754 kb on - strand, within GFF960 at 962.754 kb on - strand, within GFF960 at 962.769 kb on - strand at 962.774 kb on - strand at 962.784 kb on + strand at 962.798 kb on - strand at 962.799 kb on + strand at 962.815 kb on + strand at 962.815 kb on + strand at 962.823 kb on - strand at 962.823 kb on - strand at 962.825 kb on + strand at 962.837 kb on + strand at 962.844 kb on + strand at 962.867 kb on - strand at 962.878 kb on - strand at 962.888 kb on + strand at 962.891 kb on + strand at 962.899 kb on + strand at 962.899 kb on + strand at 962.899 kb on + strand at 962.899 kb on + strand at 962.901 kb on + strand at 962.901 kb on + strand at 962.907 kb on - strand at 962.907 kb on - strand at 962.907 kb on - strand at 962.929 kb on + strand at 962.932 kb on - strand at 962.932 kb on - strand at 962.932 kb on - strand at 962.932 kb on - strand at 962.964 kb on - strand at 962.993 kb on + strand at 963.001 kb on - strand at 963.001 kb on - strand at 963.001 kb on - strand at 963.010 kb on + strand at 963.018 kb on - strand at 963.018 kb on - strand at 963.024 kb on + strand at 963.045 kb on + strand at 963.045 kb on + strand at 963.050 kb on + strand at 963.050 kb on + strand at 963.053 kb on - strand at 963.057 kb on - strand at 963.074 kb on + strand at 963.074 kb on + strand at 963.074 kb on + strand at 963.074 kb on + strand at 963.077 kb on - strand at 963.082 kb on - strand at 963.083 kb on + strand at 963.094 kb on - strand at 963.094 kb on - strand at 963.123 kb on - strand at 963.126 kb on + strand at 963.144 kb on - strand, within GFF961 at 963.159 kb on + strand, within GFF961 at 963.167 kb on - strand, within GFF961 at 963.167 kb on - strand, within GFF961 at 963.213 kb on + strand, within GFF961 at 963.221 kb on - strand, within GFF961 at 963.222 kb on - strand, within GFF961 at 963.281 kb on + strand, within GFF961 at 963.291 kb on + strand, within GFF961 at 963.291 kb on + strand, within GFF961 at 963.299 kb on - strand, within GFF961 at 963.301 kb on + strand, within GFF961 at 963.309 kb on - strand, within GFF961 at 963.323 kb on + strand, within GFF961 at 963.335 kb on + strand, within GFF961 at 963.343 kb on + strand, within GFF961 at 963.351 kb on - strand, within GFF961 at 963.356 kb on - strand, within GFF961 at 963.370 kb on + strand, within GFF961 at 963.407 kb on - strand, within GFF961 at 963.407 kb on - strand, within GFF961 at 963.409 kb on + strand, within GFF961 at 963.443 kb on + strand, within GFF961 at 963.443 kb on + strand, within GFF961 at 963.443 kb on + strand, within GFF961 at 963.444 kb on + strand, within GFF961 at 963.449 kb on + strand, within GFF961 at 963.451 kb on - strand, within GFF961 at 963.451 kb on - strand, within GFF961 at 963.451 kb on - strand, within GFF961 at 963.452 kb on - strand, within GFF961 at 963.461 kb on + strand, within GFF961 at 963.469 kb on - strand, within GFF961 at 963.487 kb on + strand, within GFF961 at 963.491 kb on + strand, within GFF961 at 963.494 kb on - strand, within GFF961 at 963.498 kb on + strand, within GFF961 at 963.508 kb on - strand, within GFF961 at 963.527 kb on + strand, within GFF961 at 963.593 kb on + strand at 963.593 kb on + strand at 963.604 kb on + strand at 963.610 kb on - strand at 963.621 kb on + strand at 963.621 kb on + strand at 963.621 kb on + strand at 963.621 kb on + strand at 963.621 kb on + strand at 963.621 kb on + strand at 963.629 kb on - strand at 963.629 kb on - strand at 964.877 kb on - strand at 964.889 kb on - strand at 964.911 kb on + strand at 964.956 kb on + strand at 964.964 kb on - strand at 964.964 kb on - strand at 964.971 kb on - strand at 964.987 kb on - strand at 965.013 kb on - strand at 965.015 kb on - strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.028 kb on + strand at 965.032 kb on + strand at 965.032 kb on + strand at 965.032 kb on + strand at 965.033 kb on + strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.036 kb on - strand at 965.074 kb on + strand at 965.106 kb on + strand at 965.106 kb on + strand at 965.114 kb on - strand at 965.114 kb on - strand at 965.114 kb on - strand at 965.161 kb on + strand, within GFF963 at 965.161 kb on + strand, within GFF963 at 965.161 kb on + strand, within GFF963 at 965.161 kb on + strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.169 kb on - strand, within GFF963 at 965.185 kb on + strand, within GFF963 at 965.190 kb on + strand, within GFF963 at 965.206 kb on + strand, within GFF963 at 965.206 kb on + strand, within GFF963 at 965.213 kb on + strand, within GFF963 at 965.248 kb on + strand, within GFF963 at 965.261 kb on - strand, within GFF963 at 965.263 kb on + strand, within GFF963 at 965.263 kb on + strand, within GFF963 at 965.271 kb on - strand, within GFF963 at 965.271 kb on - strand, within GFF963 at 965.271 kb on - strand, within GFF963 at 965.296 kb on - strand, within GFF963 at 965.305 kb on + strand, within GFF963 at 965.322 kb on + strand, within GFF963 at 965.337 kb on + strand, within GFF963 at 965.337 kb on + strand, within GFF963 at 965.337 kb on + strand, within GFF963 at 965.337 kb on + strand, within GFF963 at 965.337 kb on + strand, within GFF963 at 965.342 kb on + strand, within GFF963 at 965.345 kb on - strand, within GFF963 at 965.364 kb on + strand, within GFF963 at 965.394 kb on + strand, within GFF963 at 965.402 kb on - strand, within GFF963 at 965.417 kb on + strand, within GFF963 at 965.443 kb on - strand, within GFF963 at 965.454 kb on + strand, within GFF963 at 965.454 kb on + strand, within GFF963 at 965.462 kb on - strand, within GFF963 at 965.462 kb on - strand, within GFF963 at 965.473 kb on - strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.551 kb on + strand, within GFF963 at 965.558 kb on - strand, within GFF963 at 965.559 kb on - strand, within GFF963 at 965.559 kb on - strand, within GFF963 at 965.559 kb on - strand, within GFF963 at 965.559 kb on - strand, within GFF963 at 965.582 kb on - strand, within GFF963 at 965.583 kb on - strand, within GFF963 at 965.584 kb on - strand, within GFF963 at 965.584 kb on - strand, within GFF963 at 965.660 kb on + strand, within GFF963 at 965.666 kb on - strand, within GFF963 at 965.668 kb on + strand, within GFF963 at 965.697 kb on + strand, within GFF963 at 965.697 kb on + strand, within GFF963 at 965.697 kb on - strand, within GFF963 at 965.702 kb on + strand, within GFF963 at 965.702 kb on + strand, within GFF963 at 965.705 kb on - strand, within GFF963 at 965.705 kb on - strand, within GFF963 at 965.705 kb on - strand, within GFF963 at 965.705 kb on - strand, within GFF963 at 965.705 kb on - strand, within GFF963 at 965.705 kb on - strand, within GFF963 at 965.707 kb on + strand, within GFF963 at 965.710 kb on - strand, within GFF963 at 965.715 kb on - strand, within GFF963 at 965.715 kb on - strand, within GFF963 at 965.720 kb on - strand, within GFF963 at 965.720 kb on - strand, within GFF963 at 965.720 kb on - strand, within GFF963 at 965.730 kb on - strand, within GFF963 at 965.730 kb on - strand, within GFF963 at 965.746 kb on - strand, within GFF963 at 965.746 kb on - strand, within GFF963 at 965.749 kb on + strand, within GFF963 at 965.757 kb on - strand, within GFF963 at 965.767 kb on + strand, within GFF963 at 965.770 kb on + strand, within GFF963 at 965.810 kb on - strand, within GFF963
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 962,674 + GFF960 0.85 -0.7 962,675 - GFF960 0.85 -1.5 962,676 - GFF960 0.85 -1.1 962,676 - GFF960 0.85 -0.9 962,684 + GFF960 0.86 -1.0 962,692 - GFF960 0.86 -0.5 962,694 + GFF960 0.86 +0.1 962,694 + GFF960 0.86 -1.7 962,724 + GFF960 0.88 -1.5 962,727 - GFF960 0.88 -1.2 962,741 + GFF960 0.89 -1.1 962,746 + GFF960 0.89 -0.6 962,746 + GFF960 0.89 +1.3 962,754 - GFF960 0.89 -0.3 962,754 - GFF960 0.89 +0.7 962,769 - -1.4 962,774 - +0.1 962,784 + +0.9 962,798 - -1.9 962,799 + -0.3 962,815 + +0.7 962,815 + +1.1 962,823 - -0.4 962,823 - +1.7 962,825 + -0.2 962,837 + +0.4 962,844 + -1.9 962,867 - -1.8 962,878 - -1.1 962,888 + -0.4 962,891 + -0.9 962,899 + -1.0 962,899 + -0.9 962,899 + -0.4 962,899 + -1.6 962,901 + -1.1 962,901 + +0.2 962,907 - -0.9 962,907 - -0.1 962,907 - -1.8 962,929 + -1.6 962,932 - +0.4 962,932 - -1.6 962,932 - -0.1 962,932 - -0.6 962,964 - -1.2 962,993 + +0.8 963,001 - -0.7 963,001 - +0.1 963,001 - -0.8 963,010 + -0.7 963,018 - -0.9 963,018 - +0.7 963,024 + +1.4 963,045 + -0.5 963,045 + -1.4 963,050 + +1.7 963,050 + -0.1 963,053 - -0.1 963,057 - -0.6 963,074 + +0.7 963,074 + -0.9 963,074 + -0.7 963,074 + -0.8 963,077 - -0.9 963,082 - +1.6 963,083 + -0.4 963,094 - +0.3 963,094 - -0.2 963,123 - +1.6 963,126 + -0.4 963,144 - GFF961 0.13 +0.3 963,159 + GFF961 0.16 -0.9 963,167 - GFF961 0.17 -1.6 963,167 - GFF961 0.17 -0.5 963,213 + GFF961 0.26 -1.9 963,221 - GFF961 0.28 -0.4 963,222 - GFF961 0.28 +0.6 963,281 + GFF961 0.40 -1.7 963,291 + GFF961 0.42 -1.5 963,291 + GFF961 0.42 -0.8 963,299 - GFF961 0.43 -0.3 963,301 + GFF961 0.43 -0.9 963,309 - GFF961 0.45 -0.8 963,323 + GFF961 0.48 -0.5 963,335 + GFF961 0.50 -0.9 963,343 + GFF961 0.52 +0.2 963,351 - GFF961 0.53 +0.4 963,356 - GFF961 0.54 -1.4 963,370 + GFF961 0.57 -1.4 963,407 - GFF961 0.64 +0.2 963,407 - GFF961 0.64 -0.9 963,409 + GFF961 0.65 -1.6 963,443 + GFF961 0.71 -2.0 963,443 + GFF961 0.71 -1.5 963,443 + GFF961 0.71 -0.4 963,444 + GFF961 0.71 -0.4 963,449 + GFF961 0.72 +0.4 963,451 - GFF961 0.73 -1.2 963,451 - GFF961 0.73 +0.2 963,451 - GFF961 0.73 -0.5 963,452 - GFF961 0.73 -0.2 963,461 + GFF961 0.75 +0.1 963,469 - GFF961 0.76 -1.0 963,487 + GFF961 0.80 -2.4 963,491 + GFF961 0.81 -0.1 963,494 - GFF961 0.81 +0.2 963,498 + GFF961 0.82 -0.9 963,508 - GFF961 0.84 -1.8 963,527 + GFF961 0.88 -0.2 963,593 + -1.7 963,593 + -2.1 963,604 + -1.4 963,610 - -1.6 963,621 + -0.6 963,621 + -0.4 963,621 + +0.2 963,621 + -0.7 963,621 + -1.6 963,621 + +1.4 963,629 - +0.7 963,629 - -0.9 964,877 - +0.2 964,889 - +0.7 964,911 + +2.0 964,956 + +0.4 964,964 - -1.5 964,964 - -0.6 964,971 - -0.1 964,987 - -0.5 965,013 - -1.0 965,015 - +1.3 965,028 + -1.2 965,028 + -1.0 965,028 + -0.7 965,028 + -2.1 965,028 + -1.0 965,028 + -1.2 965,028 + -2.1 965,028 + -1.0 965,028 + -1.1 965,032 + +0.2 965,032 + -1.0 965,032 + +0.9 965,033 + -0.6 965,036 - +0.7 965,036 - +0.3 965,036 - -0.5 965,036 - -0.9 965,036 - -1.0 965,036 - -1.0 965,036 - +0.7 965,036 - -1.1 965,074 + -1.8 965,106 + -1.6 965,106 + -0.0 965,114 - -1.3 965,114 - -1.5 965,114 - -1.0 965,161 + GFF963 0.12 -0.6 965,161 + GFF963 0.12 -0.8 965,161 + GFF963 0.12 -1.7 965,161 + GFF963 0.12 -1.9 965,169 - GFF963 0.12 -1.3 965,169 - GFF963 0.12 -3.0 965,169 - GFF963 0.12 -1.0 965,169 - GFF963 0.12 -0.5 965,169 - GFF963 0.12 +0.4 965,169 - GFF963 0.12 -1.6 965,169 - GFF963 0.12 -2.1 965,169 - GFF963 0.12 -1.3 965,169 - GFF963 0.12 -1.6 965,185 + GFF963 0.14 -3.0 965,190 + GFF963 0.14 -0.5 965,206 + GFF963 0.16 -0.3 965,206 + GFF963 0.16 -0.5 965,213 + GFF963 0.16 -0.8 965,248 + GFF963 0.20 -0.3 965,261 - GFF963 0.21 -1.3 965,263 + GFF963 0.21 -1.1 965,263 + GFF963 0.21 -3.3 965,271 - GFF963 0.22 -1.0 965,271 - GFF963 0.22 -1.6 965,271 - GFF963 0.22 -0.3 965,296 - GFF963 0.24 -1.1 965,305 + GFF963 0.25 -1.7 965,322 + GFF963 0.26 -0.5 965,337 + GFF963 0.28 -1.8 965,337 + GFF963 0.28 -2.2 965,337 + GFF963 0.28 -0.8 965,337 + GFF963 0.28 -0.5 965,337 + GFF963 0.28 -0.3 965,342 + GFF963 0.28 -1.0 965,345 - GFF963 0.28 -1.5 965,364 + GFF963 0.30 -0.6 965,394 + GFF963 0.33 -0.6 965,402 - GFF963 0.34 -1.5 965,417 + GFF963 0.35 -1.8 965,443 - GFF963 0.37 -1.3 965,454 + GFF963 0.38 -1.0 965,454 + GFF963 0.38 -1.4 965,462 - GFF963 0.39 +0.1 965,462 - GFF963 0.39 -0.8 965,473 - GFF963 0.40 -1.6 965,551 + GFF963 0.47 -1.7 965,551 + GFF963 0.47 -0.8 965,551 + GFF963 0.47 -1.8 965,551 + GFF963 0.47 -0.5 965,551 + GFF963 0.47 -2.0 965,551 + GFF963 0.47 -1.1 965,551 + GFF963 0.47 -1.0 965,558 - GFF963 0.48 -2.4 965,559 - GFF963 0.48 -1.7 965,559 - GFF963 0.48 -0.3 965,559 - GFF963 0.48 -1.0 965,559 - GFF963 0.48 -0.7 965,582 - GFF963 0.50 -1.6 965,583 - GFF963 0.50 -1.4 965,584 - GFF963 0.50 -0.5 965,584 - GFF963 0.50 -0.2 965,660 + GFF963 0.57 -1.1 965,666 - GFF963 0.58 -0.3 965,668 + GFF963 0.58 -1.1 965,697 + GFF963 0.61 -1.1 965,697 + GFF963 0.61 -0.9 965,697 - GFF963 0.61 -0.7 965,702 + GFF963 0.61 -2.0 965,702 + GFF963 0.61 -1.3 965,705 - GFF963 0.61 -1.5 965,705 - GFF963 0.61 -1.5 965,705 - GFF963 0.61 -1.1 965,705 - GFF963 0.61 -2.0 965,705 - GFF963 0.61 -0.3 965,705 - GFF963 0.61 -0.3 965,707 + GFF963 0.62 -0.6 965,710 - GFF963 0.62 -1.1 965,715 - GFF963 0.62 -0.7 965,715 - GFF963 0.62 -1.0 965,720 - GFF963 0.63 -1.0 965,720 - GFF963 0.63 -0.6 965,720 - GFF963 0.63 -1.6 965,730 - GFF963 0.64 -1.0 965,730 - GFF963 0.64 -1.3 965,746 - GFF963 0.65 -0.8 965,746 - GFF963 0.65 -1.0 965,749 + GFF963 0.65 -0.5 965,757 - GFF963 0.66 -0.7 965,767 + GFF963 0.67 -0.7 965,770 + GFF963 0.67 -0.7 965,810 - GFF963 0.71 -1.9
Or see this region's nucleotide sequence