Strain Fitness in Sphingobium sp. HT1-2 around GFF859

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
844,494	-		GFF857	0.79	+0.8
844,498	-		GFF857	0.80	+0.7
844,504	-		GFF857	0.81	-1.4
844,522	+		GFF857	0.84	-0.4
844,526	+		GFF857	0.85	+0.5
844,528	+		GFF857	0.85	+0.6
844,536	-		GFF857	0.86	-0.9
844,541	+		GFF857	0.87	-0.2
844,544	-		GFF857	0.88	+0.0
844,548	+		GFF857	0.88	-0.5
844,549	-		GFF857	0.89	+1.3
844,549	-		GFF857	0.89	-1.3
844,556	-				-1.3
844,556	-				+0.2
844,556	-				-1.3
844,571	-				-2.6
844,589	-				-0.3
844,594	-				-1.1
844,604	-				+0.4
844,604	-				-0.2
844,614	+				-1.0
844,614	+				+0.7
844,614	+				-1.5
844,617	-				-1.2
844,617	-				-0.3
844,622	+				+0.5
844,622	-				+0.3
844,622	-				-0.5
844,622	-				+0.0
844,624	+				-0.3
844,624	+				-1.3
844,624	+				-0.7
844,632	-				-0.8
844,632	-				+0.6
844,632	-				-1.3
844,632	-				-0.3
844,632	-				-0.9
844,672	-				-0.5
844,681	+				-1.4
844,681	+				-1.3
844,690	+				+0.4
844,693	+				-0.5
844,698	-		GFF858	0.10	-1.1
844,701	-		GFF858	0.11	-0.6
844,708	-		GFF858	0.11	-1.1
844,711	+		GFF858	0.12	+0.0
844,723	+		GFF858	0.13	-1.4
844,731	-		GFF858	0.14	+0.0
844,741	-		GFF858	0.15	-1.1
844,741	-		GFF858	0.15	+0.8
844,745	-		GFF858	0.16	-0.6
844,756	-		GFF858	0.17	-1.3
844,768	+		GFF858	0.18	-0.1
844,768	+		GFF858	0.18	-0.1
844,768	+		GFF858	0.18	-1.0
844,768	+		GFF858	0.18	-0.8
844,768	+		GFF858	0.18	-0.3
844,768	+		GFF858	0.18	+0.3
844,776	-		GFF858	0.19	-0.7
844,789	-		GFF858	0.21	+0.1
844,794	-		GFF858	0.21	-2.3
844,802	+		GFF858	0.22	-0.9
844,802	+		GFF858	0.22	+0.1
844,802	+		GFF858	0.22	-0.6
844,804	+		GFF858	0.22	-0.9
844,804	+		GFF858	0.22	+0.2
844,804	+		GFF858	0.22	-1.7
844,804	+		GFF858	0.22	-1.3
844,810	-		GFF858	0.23	+0.8
844,810	-		GFF858	0.23	+0.3
844,810	-		GFF858	0.23	-2.5
844,810	-		GFF858	0.23	-0.7
844,810	-		GFF858	0.23	-1.1
844,812	-		GFF858	0.23	+0.9
844,819	+		GFF858	0.24	-1.1
844,819	+		GFF858	0.24	+0.1
844,827	-		GFF858	0.25	-0.3
844,827	-		GFF858	0.25	-0.7
844,827	-		GFF858	0.25	-1.6
844,829	+		GFF858	0.25	-0.9
844,841	-		GFF858	0.27	-0.1
844,843	+		GFF858	0.27	-0.8
844,866	-		GFF858	0.30	-1.0
844,879	+		GFF858	0.31	+0.2
844,913	+		GFF858	0.35	-0.4
844,913	-		GFF858	0.35	-2.1
844,915	+		GFF858	0.35	-1.1
844,929	+		GFF858	0.37	+0.0
844,936	+		GFF858	0.38	-1.1
844,936	+		GFF858	0.38	+0.2
844,944	-		GFF858	0.39	-0.3
844,970	+		GFF858	0.42	-0.2
844,970	+		GFF858	0.42	-0.8
845,003	+		GFF858	0.45	+0.3
845,003	+		GFF858	0.45	-0.5
845,003	+		GFF858	0.45	-0.4
845,008	+		GFF858	0.46	-0.7
845,011	-		GFF858	0.46	-0.9
845,013	+		GFF858	0.47	+1.3
845,013	+		GFF858	0.47	-1.8
845,013	+		GFF858	0.47	+0.7
845,013	+		GFF858	0.47	-1.1
845,021	-		GFF858	0.48	+0.2
845,021	-		GFF858	0.48	+0.0
845,021	-		GFF858	0.48	-2.3
845,021	-		GFF858	0.48	-0.8
845,157	+		GFF858	0.63	+0.7
845,192	-		GFF858	0.67	-0.6
845,225	+		GFF858	0.71	-1.5
845,233	+		GFF858	0.72	-0.8
845,235	+		GFF858	0.72	-0.5
845,258	+		GFF858	0.75	-0.6
845,258	+		GFF858	0.75	-0.6
845,266	-		GFF858	0.76	-0.4
845,266	-		GFF858	0.76	-1.2
845,266	-		GFF858	0.76	-1.6
845,268	+		GFF858	0.76	-0.7
845,268	+		GFF858	0.76	-1.6
845,268	+		GFF858	0.76	-0.1
845,268	+		GFF858	0.76	-0.8
845,268	+		GFF858	0.76	-0.3
845,268	+		GFF858	0.76	-0.6
845,273	+		GFF858	0.77	+1.1
845,276	-		GFF858	0.77	-1.1
845,276	-		GFF858	0.77	-0.1
845,276	-		GFF858	0.77	-1.6
845,278	+		GFF858	0.77	-1.5
845,281	-		GFF858	0.78	+0.1
845,302	+		GFF858	0.80	-0.3
845,305	-		GFF858	0.80	-1.7
845,310	-		GFF858	0.81	-1.3
845,321	+		GFF858	0.82	+1.0
845,337	+		GFF858	0.84	-0.6
845,339	-		GFF858	0.84	-0.5
845,341	-		GFF858	0.84	-0.9
845,352	+		GFF858	0.86	-1.3
845,352	+		GFF858	0.86	-1.1
845,360	-		GFF858	0.87	+0.6
845,360	-		GFF858	0.87	-0.2
845,373	-		GFF858	0.88	-1.6
845,384	+		GFF858	0.89	+0.7
845,389	+				-1.5
845,389	+				+0.6
845,392	-				-0.9
845,392	-				-0.6
845,392	-				+0.1
845,392	-				-1.2
845,398	-				+0.2
845,408	+				-0.3
845,408	+				-0.3
845,413	+				+1.0
845,423	+				+0.4
845,423	+				-0.7
845,423	+				-1.0
845,423	+				-1.4
845,423	+				-0.6
845,423	+				-1.0
845,423	+				+0.3
845,423	+				-0.8
845,423	+				+0.7
845,431	-				+0.4
845,431	-				-0.6
845,431	-				+0.1
845,431	-				-0.8
845,431	-				-0.4
845,431	-				+0.6
845,431	-				+0.2
845,431	-				-0.8
845,431	-				+0.1
845,431	-				-0.2
845,431	-				+0.7
845,431	-				-1.3
845,431	-				+0.4
845,431	-				+0.4
845,433	+				+0.1
845,433	+				-0.4
845,443	+				-0.7
845,446	-				-0.3
845,485	+				+1.1
845,493	-				+0.2
845,493	-				+0.7
845,526	-				-1.3
845,528	+				-0.2
845,533	+				-1.4
845,533	+				+0.2
845,533	+				-0.5
845,533	+				+0.7
845,541	-				-1.1
845,541	-				-0.3
845,541	-				-0.4
845,541	-				-1.6
845,541	-				+1.7
845,554	-				-1.5
845,568	+				-1.6
845,568	+				+0.5
845,568	+				-0.1
845,568	+				+1.7
845,568	+				-0.5
845,568	-				-1.2
845,571	-				-0.1
845,576	-				-0.3
845,576	-				-0.1
845,576	-				-0.6
845,576	-				-0.8
845,576	-				-0.3
845,576	-				-1.9
845,576	-				+0.1
845,601	+		GFF859	0.12	-2.1
845,609	-		GFF859	0.13	+0.4
845,626	-		GFF859	0.14	-1.1
845,652	-		GFF859	0.17	+0.0
845,679	+		GFF859	0.20	-0.1
845,679	+		GFF859	0.20	-0.8
845,679	+		GFF859	0.20	-0.5
845,679	+		GFF859	0.20	-2.0
845,679	+		GFF859	0.20	+0.5
845,679	+		GFF859	0.20	-0.1
845,679	+		GFF859	0.20	+0.5
845,679	+		GFF859	0.20	+0.2
845,679	+		GFF859	0.20	-0.7
845,679	+		GFF859	0.20	-1.1
845,682	-		GFF859	0.21	+1.0
845,687	-		GFF859	0.21	-0.3
845,687	-		GFF859	0.21	-1.1
845,687	-		GFF859	0.21	-0.5
845,687	-		GFF859	0.21	-2.0
845,692	-		GFF859	0.22	-1.3
845,694	+		GFF859	0.22	+1.3
845,694	+		GFF859	0.22	+1.3
845,704	+		GFF859	0.23	-1.9
845,704	+		GFF859	0.23	+0.4
845,713	-		GFF859	0.24	-0.3
845,717	+		GFF859	0.24	-1.2
845,717	+		GFF859	0.24	-1.3
845,726	-		GFF859	0.25	-0.6
845,732	+		GFF859	0.26	-1.2
845,732	+		GFF859	0.26	-1.1
845,740	-		GFF859	0.27	+0.0
845,742	+		GFF859	0.27	-0.5
845,742	+		GFF859	0.27	+0.0
845,744	-		GFF859	0.27	-0.4
845,747	+		GFF859	0.28	+0.9
845,747	+		GFF859	0.28	+0.2
845,747	+		GFF859	0.28	-0.9
845,747	+		GFF859	0.28	-0.5
845,747	+		GFF859	0.28	+0.2
845,747	+		GFF859	0.28	-0.6
845,747	+		GFF859	0.28	-0.4
845,747	+		GFF859	0.28	-1.2
845,750	-		GFF859	0.28	-2.6
845,755	-		GFF859	0.29	-0.6
845,755	-		GFF859	0.29	-1.3
845,755	-		GFF859	0.29	-2.0
845,780	-		GFF859	0.31	-1.1
845,796	+		GFF859	0.33	-1.2
845,796	+		GFF859	0.33	-0.1
845,801	+		GFF859	0.34	-0.6
845,801	+		GFF859	0.34	-0.9
845,801	+		GFF859	0.34	-0.5
845,801	+		GFF859	0.34	+0.1
845,801	+		GFF859	0.34	-1.2
845,804	-		GFF859	0.34	-0.2
845,804	-		GFF859	0.34	+0.2
845,804	-		GFF859	0.34	-0.5
845,806	+		GFF859	0.34	-0.3
845,806	+		GFF859	0.34	-0.8
845,806	+		GFF859	0.34	-1.2
845,806	+		GFF859	0.34	+0.4
845,807	-		GFF859	0.34	+0.6
845,809	-		GFF859	0.34	-0.3
845,809	-		GFF859	0.34	-1.8
845,809	-		GFF859	0.34	-1.1
845,809	-		GFF859	0.34	+0.6
845,811	+		GFF859	0.35	-1.0
845,814	-		GFF859	0.35	+0.4
845,814	-		GFF859	0.35	+0.2
845,828	-		GFF859	0.37	-2.3
845,828	-		GFF859	0.37	-0.3
845,831	-		GFF859	0.37	-2.5
845,874	+		GFF859	0.42	-0.3
845,874	+		GFF859	0.42	-0.6
845,874	+		GFF859	0.42	-0.6
845,874	+		GFF859	0.42	-0.1
845,882	-		GFF859	0.42	+0.7
845,882	-		GFF859	0.42	-1.9
845,882	-		GFF859	0.42	+0.4
845,882	-		GFF859	0.42	-1.1
845,884	-		GFF859	0.43	-0.1
845,926	+		GFF859	0.47	-0.5
845,926	+		GFF859	0.47	+0.9
845,935	+		GFF859	0.48	+1.1
845,936	+		GFF859	0.48	+0.5
845,943	-		GFF859	0.49	-1.9
845,944	-		GFF859	0.49	-0.1
845,944	-		GFF859	0.49	-1.1
845,964	+		GFF859	0.51	-0.0
845,964	+		GFF859	0.51	+0.5
845,964	+		GFF859	0.51	+0.8
845,964	+		GFF859	0.51	-1.2
845,991	+		GFF859	0.54	+0.2
846,004	-		GFF859	0.56	-1.9
846,026	-		GFF859	0.58	+1.2
846,026	-		GFF859	0.58	-0.3
846,071	-		GFF859	0.63	-0.3
846,073	+		GFF859	0.63	-0.3
846,079	-		GFF859	0.64	+0.5
846,081	-		GFF859	0.64	-2.1
846,081	-		GFF859	0.64	-0.3
846,081	-		GFF859	0.64	-1.5
846,090	+		GFF859	0.65	+1.9
846,091	-		GFF859	0.65	+0.9
846,106	-		GFF859	0.67	+0.9
846,130	+		GFF859	0.70	-1.2
846,131	-		GFF859	0.70	-1.3
846,152	+		GFF859	0.72	-0.7
846,160	-		GFF859	0.73	-0.3
846,160	-		GFF859	0.73	-0.7
846,164	+		GFF859	0.73	-0.6
846,164	+		GFF859	0.73	-0.8
846,164	+		GFF859	0.73	-1.3
846,165	-		GFF859	0.73	-1.1
846,165	-		GFF859	0.73	+0.0
846,165	-		GFF859	0.73	-1.0
846,165	-		GFF859	0.73	-0.3
846,172	-		GFF859	0.74	+0.4
846,193	-		GFF859	0.76	-1.8
846,197	+		GFF859	0.77	-1.0
846,197	+		GFF859	0.77	+0.2
846,212	-		GFF859	0.78	+0.5
846,225	+		GFF859	0.80	-0.5
846,228	-		GFF859	0.80	-0.6
846,228	-		GFF859	0.80	-2.2
846,246	+		GFF859	0.82	-1.7
846,296	-		GFF859	0.88	+0.0
846,302	-		GFF859	0.88	-1.7
846,303	-		GFF859	0.88	-1.0
846,307	-		GFF859	0.89	-0.5
846,314	+		GFF859	0.90	-1.7
846,314	+		GFF859	0.90	-2.1
846,314	+		GFF859	0.90	-1.5
846,355	+				+0.2
846,355	+				-0.7
846,363	-				-0.1
846,388	-				-0.9
846,390	-				+0.1
846,402	+				-1.3
846,405	-				-0.3
846,415	+				-0.1
846,448	+				+1.0
846,456	-				-0.2
846,456	-				+1.9
846,471	-				-0.1
846,472	+				-1.1
846,507	+				-2.2
846,507	+				-0.5
846,520	+				-0.7
846,528	-				-0.7
846,550	-		GFF860	0.11	-0.4
846,550	-		GFF860	0.11	+0.3
846,560	-		GFF860	0.12	-1.3
846,561	+		GFF860	0.12	+1.3
846,561	+		GFF860	0.12	-0.6
846,561	+		GFF860	0.12	-0.7
846,561	+		GFF860	0.12	+0.6
846,569	-		GFF860	0.13	-2.9
846,569	-		GFF860	0.13	-1.8
846,585	-		GFF860	0.14	-0.1
846,587	+		GFF860	0.14	-1.1
846,592	+		GFF860	0.14	-1.4
846,592	+		GFF860	0.14	+0.4
846,592	+		GFF860	0.14	-1.8
846,592	+		GFF860	0.14	-0.9
846,592	+		GFF860	0.14	-0.3
846,595	-		GFF860	0.15	-0.8
846,595	-		GFF860	0.15	+0.5
846,600	-		GFF860	0.15	-0.9
846,600	-		GFF860	0.15	-0.2
846,600	-		GFF860	0.15	-1.3
846,600	-		GFF860	0.15	-0.4
846,600	-		GFF860	0.15	+0.1
846,600	-		GFF860	0.15	-1.5
846,663	+		GFF860	0.20	-0.9
846,663	+		GFF860	0.20	-0.4
846,666	-		GFF860	0.20	-0.6
846,666	-		GFF860	0.20	+0.3
846,676	+		GFF860	0.21	+0.5
846,682	-		GFF860	0.21	-0.6
846,695	+		GFF860	0.22	-0.7
846,749	+		GFF860	0.27	-2.2
846,755	+		GFF860	0.27	+0.5
846,757	-		GFF860	0.27	+0.1
846,771	+		GFF860	0.28	-0.8
846,793	+		GFF860	0.30	-0.3
846,801	-		GFF860	0.31	+0.3
846,802	+		GFF860	0.31	-2.1
846,810	-		GFF860	0.31	-0.3
846,825	+		GFF860	0.32	-0.5
846,838	+		GFF860	0.33	-0.7
846,838	+		GFF860	0.33	-1.7
846,838	+		GFF860	0.33	+1.2
846,839	+		GFF860	0.34	+0.3
846,843	+		GFF860	0.34	-0.5
846,843	+		GFF860	0.34	-0.4
846,846	-		GFF860	0.34	-0.5
846,846	-		GFF860	0.34	-0.5
846,848	+		GFF860	0.34	-1.3
846,853	+		GFF860	0.35	-1.0
846,853	+		GFF860	0.35	+1.7
846,853	+		GFF860	0.35	-1.1
846,853	+		GFF860	0.35	+0.6
846,853	+		GFF860	0.35	-1.0
846,856	-		GFF860	0.35	+1.2
846,856	-		GFF860	0.35	-1.2
846,856	-		GFF860	0.35	-0.6
846,856	-		GFF860	0.35	+0.3
846,861	-		GFF860	0.35	-0.6
846,861	-		GFF860	0.35	+0.4
846,861	-		GFF860	0.35	-1.0
846,861	-		GFF860	0.35	-0.6
846,915	+		GFF860	0.39	-0.3
846,916	+		GFF860	0.40	+0.7
846,917	+		GFF860	0.40	-0.5
846,921	+		GFF860	0.40	-0.7
846,923	-		GFF860	0.40	-1.2
846,929	+		GFF860	0.41	-1.1
846,937	-		GFF860	0.41	+1.2
846,942	-		GFF860	0.42	-0.8
846,975	+		GFF860	0.44	-0.9
847,000	-		GFF860	0.46	+0.6
847,006	+		GFF860	0.46	-0.4
847,006	+		GFF860	0.46	+0.1
847,014	-		GFF860	0.47	-0.3
847,014	-		GFF860	0.47	+0.4
847,055	-		GFF860	0.50	-1.2
847,062	-		GFF860	0.51	-1.1
847,063	+		GFF860	0.51	-0.1
847,103	+		GFF860	0.54	-1.2
847,103	-		GFF860	0.54	+1.2
847,128	+		GFF860	0.56	-1.2
847,128	+		GFF860	0.56	-0.7
847,151	+		GFF860	0.58	+0.6
847,153	+		GFF860	0.58	-0.5
847,153	+		GFF860	0.58	+1.2
847,153	+		GFF860	0.58	+0.1
847,153	+		GFF860	0.58	+0.2
847,153	+		GFF860	0.58	-0.5
847,158	+		GFF860	0.58	-1.4
847,159	-		GFF860	0.58	-0.1
847,161	-		GFF860	0.58	-0.4
847,161	-		GFF860	0.58	+0.7
847,161	-		GFF860	0.58	-1.2
847,161	-		GFF860	0.58	-1.0
847,161	-		GFF860	0.58	-1.9
847,161	-		GFF860	0.58	-2.5
847,172	+		GFF860	0.59	-0.5
847,182	+		GFF860	0.60	+0.4
847,185	-		GFF860	0.60	-0.7
847,185	-		GFF860	0.60	+0.2
847,187	+		GFF860	0.60	-1.4
847,187	+		GFF860	0.60	-0.5
847,187	+		GFF860	0.60	-1.6
847,190	-		GFF860	0.61	+0.3
847,190	-		GFF860	0.61	-1.3
847,190	-		GFF860	0.61	-1.9
847,190	-		GFF860	0.61	-1.9
847,190	-		GFF860	0.61	-0.6
847,195	-		GFF860	0.61	-1.1
847,195	-		GFF860	0.61	-1.5
847,195	-		GFF860	0.61	-0.2
847,195	-		GFF860	0.61	-0.6
847,195	-		GFF860	0.61	-0.5
847,242	+		GFF860	0.65	-0.3
847,253	-		GFF860	0.66	+0.3
847,255	+		GFF860	0.66	-1.2
847,268	+		GFF860	0.67	+1.0
847,269	+		GFF860	0.67	-0.7
847,269	+		GFF860	0.67	-1.6
847,277	+		GFF860	0.67	-0.6
847,277	-		GFF860	0.67	-1.4
847,278	-		GFF860	0.68	-0.4
847,282	+		GFF860	0.68	-0.4
847,282	+		GFF860	0.68	-0.7
847,282	+		GFF860	0.68	-0.9
847,282	+		GFF860	0.68	-1.1
847,282	+		GFF860	0.68	-1.4
847,282	+		GFF860	0.68	+0.4
847,285	-		GFF860	0.68	-0.6
847,290	-		GFF860	0.68	+0.4
847,290	-		GFF860	0.68	+0.1
847,290	-		GFF860	0.68	+0.3
847,290	-		GFF860	0.68	-1.8
847,290	-		GFF860	0.68	-0.6
847,308	+		GFF860	0.70	-0.5
847,316	+		GFF860	0.70	-1.2
847,325	+		GFF860	0.71	-0.2
847,325	+		GFF860	0.71	-0.8
847,326	+		GFF860	0.71	+0.5
847,327	+		GFF860	0.71	-0.3
847,334	-		GFF860	0.72	-2.1
847,366	-		GFF860	0.74	-0.3
847,368	+		GFF860	0.74	-0.5
847,374	-		GFF860	0.75	-2.1
847,376	-		GFF860	0.75	-0.8
847,378	-		GFF860	0.75	-1.1
847,385	-		GFF860	0.76	-0.1
847,403	+		GFF860	0.77	+0.7